BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20575.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921022 jgi|Araly1|921022|scaffold_102303.1 1347 0.0
> Ahg921022 jgi|Araly1|921022|scaffold_102303.1
Length=792
Score = 1347 bits (729), Expect = 0.0
Identities = 772/793 (97%), Gaps = 1/793 (0%)
Strand=Plus/Plus
Query 38 GAACCACCGTTACCAAAACTCGCCGGAAGAGATGGCGGACGAGATGGAGACCAAAGGAGA 97
||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 GAACCACCGTTGCGAAAACTCGCCGGAAGATATGGCGGACGAGATGGAGAACAAAGGAGA 60
Query 98 GAAGAAGTACAAGTATAGCATAATCATTCCTACCTACAACGAGCGCCTCAACATCGCTAT 157
||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 61 GAAAAAGTTCAAGTATAGCATAATCATTCCTACCTACAACGAACGCCTCAATATCGCTAT 120
Query 158 CATAGTCTACCTGATTTTCAAGCATCTCCGGGACGTTGATTTTGAGATAATTGTTGTGGA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATAGTCTACCTGATTTTCAAGCATCTCCGGGACGTTGATTTTGAGATAATTGTTGTGGA 180
Query 218 TGATGGGAGTCCTGATGGCACACAGGAAATTGTCAAGCAACTGCAGCAATTGTATGGTGA 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TGATGGGAGTCCTGATGGCACACAAGAAATTGTCAAGCAACTGCAGCAATTGTATGGTGA 240
Query 278 AGACCGTATCCTTTTAAGAGCTAGAGCCAAGAAGCTTGGTTTGGGAACTGCATATATTCA 337
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 241 AGACCGTATCCTTTTAAGAGCTAGAGCCAAGAAGCTTGGTCTGGGAACTGCATATATCCA 300
Query 338 TGGTTTGAAGCATGCTACGGGTGATTTCGTCGTGATCATGGATGCTGATCTTTCACATCA 397
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 TGGTTTGAAGCATGCTACGGGTGATTTCGTCGTAATCATGGATGCTGATCTTTCACATCA 360
Query 398 TCCAAAATACTTACCAAGTTTCATCAAGAAACAACTAGAGACAAATGCAAGTATAGTAAC 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCAAAATACTTACCAAGTTTCATCAAGAAACAACTAGAGACAAATGCAAGTATAGTAAC 420
Query 458 TGGTACACGATATGTAAAAGGTGGTGGTGTACACGGGTGGAATCTTATGCGGAAACTCAC 517
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 CGGTACACGATATGTAAAAGGTGGTGGTGTACATGGGTGGAATCTTATGCGGAAACTCAC 480
Query 518 TAGTAGAGGAGCAAATGTGCTAGCTCAAACACTTTTATGGCCTGGTGTATCTGATTTAAC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAGTAGAGGAGCAAATGTGCTAGCTCAAACACTTTTATGGCCTGGTGTATCTGATTTAAC 540
Query 578 AGGATCATTCCGGCTATACAAGAAATCGGCGCTTGAAGACGTGATTAGCTCATGTGTGAG 637
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 541 CGGATCATTCCGGCTATACAAGAAATCGGTGCTTGAAGACGTGATTAGCTCATGTGTAAG 600
Query 638 TAAAGGGTATGTCTTTCAGATGGAAATGATTGTTCGTGCAACCAGAAAAGGATACCATAT 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TAAAGGGTATGTCTTTCAGATGGAAATGATTGTTCGTGCAACCAGAAAAGGATACCATAT 660
Query 698 TGAAGAGGTACCGATCACTTTTGTTGACAGAGTCTTTGGAACTTCGAAACTCGGAGGATC 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAAGAGGTACCGATCACTTTTGTTGACAGAGTCTTTGGAACTTCGAAACTCGGAGGATC 720
Query 758 TGAAATAGTGGAATATCTAAAAGGCCTCGTCTATCTCCTGCTTACAACTTAAGACACACC 817
||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 721 TGAAATAGTTGAATATCTAAAAGGCCTCGTCTATCTCCTGCTTACGACTTA-GAGACACC 779
Query 818 AAGCAACTCAACA 830
|||||||||||||
Sbjct 780 AAGCAACTCAACA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5