BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20600.1
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1 785 0.0
Ahg949550 jgi|Araly1|949550|scaffold_801437.1 743 0.0
Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1 302 4e-81
Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871 97.1 2e-19
> Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1
Length=726
Score = 785 bits (425), Expect = 0.0
Identities = 508/548 (93%), Gaps = 6/548 (1%)
Strand=Plus/Plus
Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTC-CCTTCCATTAT 154
||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 90 TGAAGAGGATATAGATGATGAAGACGATACAGATGATGAGGTTGCGTCGAC-TCCATTAT 148
Query 155 TACTAGTAAGCC-AAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaaactgaaaaa 213
||| | |||||| ||| | ||||||||||||||||||||||||||||||| |||| |||
Sbjct 149 TACAAATAAGCCAAAG-TCGTCAAAAGCAGTCTAGGAAGAGGGAAGAAAAATCTGACAAA 207
Query 214 aaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTTCA 273
|||||||||||||||||||| || || ||||||||||||||||||||| |||||||||||
Sbjct 208 AATCAACCTAAGAGGGTTAAAAAACATAACATCATGAAAATAAATATCGATGACTTTTCA 267
Query 274 GAAGAAACTCTGAGGTTAATTGAGGAT-TGGTACAACGCTGAACTCGATCCACAGGATAT 332
|||||||||||||||| |||||||| | |||||||| | ||||||||||||||| |||||
Sbjct 268 GAAGAAACTCTGAGGTCAATTGAGG-TATGGTACAAAGATGAACTCGATCCACAAGATAT 326
Query 333 ATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATGTC 392
|||||||||| |||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 327 ATTCGGCGATAATGAGGTGACGAAGCAATTCAGCAAACCGATAAAGAAGCAGTTGATGTC 386
Query 393 GAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAGAA 452
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 387 GAGCGACGTCGATAAAGATCAATGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAGAA 446
Query 453 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTGTA 512
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 447 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGAGTTGATGTTTCGGTGTA 506
Query 513 TGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACACC 572
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 507 TGGACCAGACGGGGCAGTTCAAAAGATGAAGTTCAAGATTTGGAATGGGGATAAAACACC 566
Query 573 TGTCTTAACTTCAGGGTGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAAGACTTCTGA 632
||| ||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 567 TGTGTTAACTTCAGGATGGAAGCAGTTTGTGGCAGATTATGGTCTTGTGATGACTTCTGA 626
Query 633 TTTTGTCA 640
|||| |||
Sbjct 627 TTTTATCA 634
> Ahg949550 jgi|Araly1|949550|scaffold_801437.1
Length=805
Score = 743 bits (402), Expect = 0.0
Identities = 506/555 (91%), Gaps = 11/555 (2%)
Strand=Plus/Plus
Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTCC-CTTCCATTAT 154
|||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 158 TGAAGAGGATATAGATGATGAAGATGATACAGATGATGAGGTTGCGTCCAC-TCCATTAT 216
Query 155 TACTAGTAAGCCAAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaa--a-ctgaaa 211
||| ||||||||||||| |||||||| ||||||||||||||||||||||| | |||| |
Sbjct 217 TACAAGTAAGCCAAGCTCATCAAAAGAAGTCTAGGAAGAGGGAAGAAAAAGTATCTGACA 276
Query 212 aaaaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTT 271
||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||||
Sbjct 277 AAAATCAACCTAAGAGGGTTAAGAAACAGAGCATCATGAAAATAAATATCAAAGACTTTT 336
Query 272 CAGAAGAAACTCTGAGGTTAATTGAGGAT-TGGTACAACGCTGAACTCGATCCACAGGAT 330
||||||| |||| ||||| |||||||| | |||||||| |||||| | |||||||||||
Sbjct 337 CAGAAGAGACTCGGAGGTCAATTGAGG-TATGGTACAAAGCTGAAATTGATCCACAGGAA 395
Query 331 ATATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATG 390
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 396 ATATTCGGCGATAATGAGGTGACGAGGCAATTCAGCAAACCGATAAAGAAGCAGTTGATG 455
Query 391 TCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAG 450
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 456 TCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAG 515
Query 451 AAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTG 510
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 516 AAGATGCTTCCTTTTCTAGAAGAATCAGAGAATCCGGTAAAGGGGGTTGATGTTTCGGTG 575
Query 511 TATGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACA 570
|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 576 TATGGACCAGACGGAAAAGTTCAACAGATGAAGTTCAAGTTCTGGAATGGGGATAAAACA 635
Query 571 CCTGTCTTAACTTCAGGG-TGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAA-GACTT 628
||||| |||||| | ||| |||| | ||||||| ||| | | ||||||| | || |||||
Sbjct 636 CCTGTATTAACTAC-GGGATGGAAGGAGTTTGTTGCAAAATGTGGTCTTCT-AATGACTT 693
Query 629 CTGATTTTGTCACTG 643
| |||||||||||||
Sbjct 694 CCGATTTTGTCACTG 708
> Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1
Length=687
Score = 302 bits (163), Expect = 4e-81
Identities = 193/207 (93%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTCC-CTTCCATTAT 154
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 105 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAAGTTGCGTCCACT-CCATTAT 163
Query 155 TACTAGTAAGCCAA-GCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaaactgaaaaa 213
||| |||||||||| | | ||||||||||||||||||| |||||||||||| |||| |||
Sbjct 164 TACAAGTAAGCCAAAG-TCATCAAAAGCAGTCTAGGAAAAGGGAAGAAAAATCTGATAAA 222
Query 214 aaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTTCA 273
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 223 AATCAACCTAAGAGGGTTAAGAAACAGAACATCATGAAAATAAATATCAATGACTTTTCA 282
Query 274 GAAGAAACTCTGAGGTTAATTGAGGAT 300
||||||||||||||| ||||||||||
Sbjct 283 AAAGAAACTCTGAGGTCAATTGAGGAT 309
Score = 191 bits (103), Expect = 8e-48
Identities = 115/121 (95%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 384 GTTGATGTCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGT 443
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 426 GTTGATGTCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGT 485
Query 444 GAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGT 503
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 486 GAATGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAAGGGTTTGTTGT 545
Query 504 T 504
|
Sbjct 546 T 546
> Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871
Length=429
Score = 97.1 bits (52), Expect = 2e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 643 GATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGGT 697
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 160 GATGGTAAGGTATCACAGCTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGT 214
Score = 82.4 bits (44), Expect = 5e-15
Identities = 55/60 (92%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 711 TTAGAGAACACTGTAAAACCAAACAAAG-GAGAACAAGAGAGATATGTCCAGATGCACTA 769
|||| | || |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 370 TTAGGGTACGCTGTAAAACCAAAC-AAGAGAGAACAAGAGAGATATGTCCAGATGCACTA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5