BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20610.1 Length=1833 Score E Sequences producing significant alignments: (Bits) Value Ahg472290 jgi|Araly1|472290|fgenesh2_kg.1__2244__AT1G20610.1 2512 0.0 Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333 865 0.0 > Ahg472290 jgi|Araly1|472290|fgenesh2_kg.1__2244__AT1G20610.1 Length=1781 Score = 2512 bits (1360), Expect = 0.0 Identities = 1559/1652 (94%), Gaps = 26/1652 (2%) Strand=Plus/Plus Query 3 AAagagagatagagagagagTGGGAAGTATCTTCAAAACCGAAGCCATTAGAGAGAAAGA 62 ||||| ||| |||||||||| | || | |||||||| | |||||||||||||| |||||| Sbjct 1 AAAGATAGAGAGAGAGAGAGAGTGAGGGATCTTCAATATCGAAGCCATTAGAGGGAAAGA 60 Query 63 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 120 Query 123 AACTTGGATCCAACGGGATAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTCAT-A 181 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 121 AACTTGGATCCAACGGG-GAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTC-TGA 178 Query 182 AGAAT-T-T-AT-----GATCAAGGGTCGACTTAATCTCGCGTTGGTTCTTTGAATTGAC 233 ||||| | | || || ||||||| |||||||| | ||| ||||||||||||||||| Sbjct 179 AGAATCTGTGATCAAGGGA-CAAGGGTTGACTTAATTTTGCGGTGGTTCTTTGAATTGAC 237 Query 234 TGTGAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 293 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TGTAAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 297 Query 294 ATCGGATCAATGAGTCTCCAAGGGGGAGGAGTAGTAGGAAAGATCAAGACGACGGCAACA 353 ||||||||||||||||||||| || |||| | ||||||||||||||||||||||||| Sbjct 298 ATCGGATCAATGAGTCTCCAA---GGCGGAG--G-AGGAAAGATCAAGACGACGGCAACA 351 Query 354 ACAGGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACTGAAGCGCCGTCT 413 ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 352 ACAGGACCGACCAGAAGAGCACTAAGCACTATTAACAAGAACATCATTGAAGCGCCGTCT 411 Query 414 TACCCTTATGCTGTCAACAAGAGATCAGTTTCTGAAAGAGATGGCATTTGTAATAAACCA 473 |||||||||||||||||||| |||||| | |||||||| |||||||| |||||||||||| Sbjct 412 TACCCTTATGCTGTCAACAAAAGATCACTGTCTGAAAGGGATGGCATCTGTAATAAACCA 471 Query 474 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCATAAGCCACAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 472 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCAGAAGCCACAA 531 Query 534 ATCCGTGATGAGGAAACTAAGAAACCAGACTCAGTTTCAAGTGAAGAACCAGAGACGATT 593 |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||| Sbjct 532 ATCCGTGAGGAGGAAACTAAGAAACCAGACTCGGTTTCAAGCGAAGAACCAGAGAGGATT 591 Query 594 ATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAATGAGCCAATGTTTGTA 653 |||||||||| |||||| ||||| | ||||||||| |||| |||||||||||||||||| Sbjct 592 ATCATTGATGGGGATGATAGTGAGACAGAAGGAGGCGACTTTAATGAGCCAATGTTTGTT 651 Query 654 CAACATACTGAAGCAATGCTGGAGGAGATTGAACAGATGGAGAAGGAGATTGAAATGGAA 713 ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 652 CAACACACTGAAGCAATGCTGGAGGAGATTGACCAGAAGGAGAAGGAGATTGAAATGGAA 711 Query 714 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAGAATAATCCT 773 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 712 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAAAAGAATCCT 771 Query 774 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 831 Query 834 AGTTGCGTGCCTCCTAACTATATGGACAATCAACAAGATCTTAATGAGAGAATGAGAGGA 893 ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 832 AGTTGTGTGCCTCCTAACTACATGGACAATCAACAAGATCTTAATGAGAGGATGAGAGGA 891 Query 894 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAACTGATGGAGGAAACTCTT 953 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 892 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAGCTGATGGAAGAAACTCTT 951 Query 954 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCGTGAGGAAAAAG 1013 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 952 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCTTGAGGAAAAAG 1011 Query 1014 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAATATGAAGAAGTTTCAGTT 1073 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1012 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAGTATGAAGAAGTTTCAGTT 1071 Query 1074 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACTCTAGAAGAGAAGTGCTA 1133 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1072 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACACTAGAAGAGAAGTGCTA 1131 Query 1134 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1191 Query 1194 GTTTTCATGAAACGATTTCTCAAAGCTGCCCAATCTGACAAGAAGCTTGAGATTTTATCA 1253 |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1192 GTTTTCATGAAACGCTTTCTCAAAGCTGCCCAATCTGACAAAAAGCTTGAGGTTTTATCG 1251 Query 1254 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTAAG 1313 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1252 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTGAG 1311 Query 1314 CTGGCGGCCTCAGCAATCTACACTGCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGC 1373 || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1312 CTTGCGGCCTCGGCAATCTACACTGCTCAGTGTACAGTTAAGGGATTTGAAGAATGGAGC 1371 Query 1374 AAAACCTGTGAGTTTCACACAGGCTACAACGAAAAACAGCTACTGGCATGTGCGAGAAAG 1433 ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| Sbjct 1372 AAAACCTGTGAGTTTCACACAGGCTACAAGGAAGAACAGCTACTGGAATGTGCGAGAAAG 1431 Query 1434 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGAAAGTAC 1493 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1432 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGGAAGTAC 1491 Query 1494 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGATTTAAT-- 1551 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1492 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGCTTTAATGG 1551 Query 1552 ATTAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTAGAACAAAAAGAGTGTGAG 1611 | ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||| Sbjct 1552 AATAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTTGAA-AAA--GAGTGAGAG 1608 Query 1612 AGAAAGAGAGATAGTAGAGCAAGTTGCCCAAA 1643 ||| |||||||||| || ||||||||||||| Sbjct 1609 AGAGAGAGAGATAG-AG--CAAGTTGCCCAAA 1637 Score = 178 bits (96), Expect = 1e-43 Identities = 130/145 (90%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 1697 ATTCTTCTCTTTCTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGA---A 1753 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1637 ATTCTTCTCTTTTTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGATGCA 1696 Query 1754 -TCT-TCT---GATATCATGCTTTCCTATATTCAACTTGTGAATCGATTCTTGTATAGAC 1808 || ||| ||||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 1697 GTCAGTCTTTTGATATCATGTTTTCCTATATTCAAATTGTGAATCGATCCTTGTATAGAC 1756 Query 1809 TCAGGAAAATCTATGATCCAGTTTG 1833 |||||||||||||||| ||| |||| Sbjct 1757 TCAGGAAAATCTATGACCCATTTTG 1781 > Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333 Length=1299 Score = 865 bits (468), Expect = 0.0 Identities = 988/1229 (80%), Gaps = 75/1229 (6%) Strand=Plus/Plus Query 357 GGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACT-GAAGCGCC-GTCTT 414 |||| ||||||||||||||| ||| ||| ||||||||||||| | | ||| || || || Sbjct 94 GGACAGACAAGAAGAGCACTGGGTAATATAAACAAGAACATCA-TCGGAGCTCCGGT-TT 151 Query 415 ACCCTTATGCTGTCAACAAGAGATCAGTT-TCTGA-AAGAGATGGCATTTGT---AATAA 469 | |||| |||||||||||| ||| || || |||| || | |||| || ||| || || Sbjct 152 ATCCTTGTGCTGTCAACAAAAGACCA-TTCACTGAGAACA-ATGGGATATGTAACAAGAA 209 Query 470 -A--CCACC---T---GTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGA 520 | ||||| | ||||||||||||||||||||||||||||||| ||||||||| || Sbjct 210 GATTCCACCTGTTCCAGTGCATCGACCAGTTACTAGGAAGTTTGCTGTTCAGTTAGCTGA 269 Query 521 TCATAAGCCACATATCCGTGATGAGGAAACTAAGAAACCAGACTC-AGTTTC-AAGTGAA 578 | || || || |||| | |||||||| |||||| |||||| | |||| || ||| Sbjct 270 GAACAATCCCCAAATCCACAAGGAGGAAACCAAGAAATCAGACTTGA-TTTCGAAC-GAA 327 Query 579 GAACCAGAGACGATTATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAAT 638 | | ||| | || ||||| | | ||| | || | ||||||| ||| |||| Sbjct 328 GCATTAGATA-GA--ATCATA-ACA-G-ATGT--G-GA-A--GAAGGAG---ACTTTAAT 372 Query 639 GAGCCAATGTTTGTACAACATACTGAAGCAATGCTGGAGGAGATTGAACAGA-TGGAGAA 697 || ||||||||||| ||||| |||||||| ||||| || |||||||| | || ||||| Sbjct 373 GAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGACC-GAATGGAG-- 429 Query 698 GGAGATTGAAATGGAAGATGCA---G--AC--A-----AAGAAGAAGAGCCTGTGATCGA 745 || |||||||||||||||| || | | | ||| ||||||| |||| || || Sbjct 430 GG-GATTGAAATGGAAGATTCAAATGTTATTGATGTTGAAGTAGAAGAGTCTGTTATGGA 488 Query 746 TATTGAT-GCCTGTGATAAGAATAATCCTTTGGCTGCGGTTGAATATATCCATGATATGC 804 ||| || || ||||| ||||| |||||||| |||| |||||||| ||| |||| || Sbjct 489 TATAGACAGC-TGTGACAAGAACAATCCTTTAGCTGTAGTTGAATACATCGATGACATAT 547 Query 805 ATACCTTCTACAAGAATTTTGAGAAACTTAGTTGCGTGCCTCCTAACTATATGGACAATC 864 || |||||||||||| |||| | ||| ||||| || ||||| || ||||| |||| Sbjct 548 ATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGCGTACCGCCTAATTACATGGAGAATC 607 Query 865 AACAAGATC-TTAATGAGAGAATGAGAGGAATCCTCATTGACTGGTTAATTGAGGTGCAC 923 |||| || | |||| ||||| |||||||||||||| ||||| ||||| |||||||| || Sbjct 608 AACATGA-CATTAACGAGAGGATGAGAGGAATCCTTATTGATTGGTTGATTGAGGTACAT 666 Query 924 TACAAGTTTGAACTGATGGAGGAAACTCTTTATCTCACAATCAATGTCATCGACAGATTC 983 ||||||||||| ||||||||||| || ||||| || ||||||||| ||||||| ||||| Sbjct 667 TACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATCGATAGATTT 726 Query 984 CTTGCGGTTCATCA--A-ATCGTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTTG 1040 |||||||||||||| | |||| ||||||||||||||||||||| ||||| || ||| || Sbjct 727 CTTGCGGTTCATCATCACATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACAGCTATG 786 Query 1041 TTGCTTGCATGTAAATATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGATC 1100 |||||||| || ||||| |||||||||||||||||||| || |||||||| ||| ||||| Sbjct 787 TTGCTTGCTTGCAAATACGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTTATCCTGATC 846 Query 1101 TCTGACAAAGCTTACTCTAG-A-AGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACA 1158 |||||||| |||||| |||| | ||||| | || |||||||||||| ||||||| || | Sbjct 847 TCTGACAAGGCTTACACTAGGACAGAGAT-T-CTTGATATGGAGAAGTTAATGGCGAATA 904 Query 1159 CCTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGATTTCTCAAAG 1218 |||||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||||||| Sbjct 905 CCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTCAAAG 964 Query 1219 CTGCCCAATCTGACAAGAAGCTTGAGATTTTATCATTCTTTATGATCGAGCTTTGCCTTG 1278 || | ||||||||||| ||||||||| || |||||||||| || ||||||||||| || | Sbjct 965 CTTCACAATCTGACAAAAAGCTTGAGCTTCTATCATTCTTCATCATCGAGCTTTGTCTAG 1024 Query 1279 TGGAGTATGAGATGCTAGAGTAT-CTTCCATCTAAGCTGGCGGCCTCAGCAATCTACACT 1337 ||||||| |||||||| |||| || || ||| || |||| || || || ||||||||| Sbjct 1025 TGGAGTACGAGATGCTTCAGTACACT-CCTTCTCAGTTGGCTGCATCGGCGATCTACACT 1083 Query 1338 GCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGC 1397 |||||| | || ||||| ||||| || || |||||||||||| ||||||| ||| ||||| Sbjct 1084 GCTCAGAGCACGCTTAAAGGATTCGAGGATTGGAGCAAAACCAGTGAGTTCCACTCAGGC 1143 Query 1398 TACAACGAA-AAACAGCTACTGGCATGTGCGAGAAAGATGGTTGCTTTCCATCACAAGGC 1456 |||| |||| |||| ||| |||| |||| ||||||||||||||| ||| ||||||||||| Sbjct 1144 TACACCGAAGAAAC-GCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAGGC 1202 Query 1457 AGGAACAGGGAAGCTCACAGGAGTTCACAG-AAAGTACAACACATCTAAGTTCTG-TCAT 1514 ||| | ||||||| | ||||| |||||||| ||| ||||||||||| || || || | || Sbjct 1203 AGGGATAGGGAAGTTAACAGGTGTTCACAGGAAA-TACAACACATCCAAATT-TGGTTAT 1260 Query 1515 GCTGCAAGAACTGAACCAGCTGGGTTTCT 1543 |||||||||| |||||||||||||||||| Sbjct 1261 GCTGCAAGAATTGAACCAGCTGGGTTTCT 1289 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68829072715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5