BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20610.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472290 jgi|Araly1|472290|fgenesh2_kg.1__2244__AT1G20610.1 2512 0.0
Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333 865 0.0
> Ahg472290 jgi|Araly1|472290|fgenesh2_kg.1__2244__AT1G20610.1
Length=1781
Score = 2512 bits (1360), Expect = 0.0
Identities = 1559/1652 (94%), Gaps = 26/1652 (2%)
Strand=Plus/Plus
Query 3 AAagagagatagagagagagTGGGAAGTATCTTCAAAACCGAAGCCATTAGAGAGAAAGA 62
||||| ||| |||||||||| | || | |||||||| | |||||||||||||| ||||||
Sbjct 1 AAAGATAGAGAGAGAGAGAGAGTGAGGGATCTTCAATATCGAAGCCATTAGAGGGAAAGA 60
Query 63 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 120
Query 123 AACTTGGATCCAACGGGATAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTCAT-A 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 121 AACTTGGATCCAACGGG-GAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTC-TGA 178
Query 182 AGAAT-T-T-AT-----GATCAAGGGTCGACTTAATCTCGCGTTGGTTCTTTGAATTGAC 233
||||| | | || || ||||||| |||||||| | ||| |||||||||||||||||
Sbjct 179 AGAATCTGTGATCAAGGGA-CAAGGGTTGACTTAATTTTGCGGTGGTTCTTTGAATTGAC 237
Query 234 TGTGAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGTAAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 297
Query 294 ATCGGATCAATGAGTCTCCAAGGGGGAGGAGTAGTAGGAAAGATCAAGACGACGGCAACA 353
||||||||||||||||||||| || |||| | |||||||||||||||||||||||||
Sbjct 298 ATCGGATCAATGAGTCTCCAA---GGCGGAG--G-AGGAAAGATCAAGACGACGGCAACA 351
Query 354 ACAGGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACTGAAGCGCCGTCT 413
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 352 ACAGGACCGACCAGAAGAGCACTAAGCACTATTAACAAGAACATCATTGAAGCGCCGTCT 411
Query 414 TACCCTTATGCTGTCAACAAGAGATCAGTTTCTGAAAGAGATGGCATTTGTAATAAACCA 473
|||||||||||||||||||| |||||| | |||||||| |||||||| ||||||||||||
Sbjct 412 TACCCTTATGCTGTCAACAAAAGATCACTGTCTGAAAGGGATGGCATCTGTAATAAACCA 471
Query 474 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCATAAGCCACAT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 472 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCAGAAGCCACAA 531
Query 534 ATCCGTGATGAGGAAACTAAGAAACCAGACTCAGTTTCAAGTGAAGAACCAGAGACGATT 593
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 532 ATCCGTGAGGAGGAAACTAAGAAACCAGACTCGGTTTCAAGCGAAGAACCAGAGAGGATT 591
Query 594 ATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAATGAGCCAATGTTTGTA 653
|||||||||| |||||| ||||| | ||||||||| |||| ||||||||||||||||||
Sbjct 592 ATCATTGATGGGGATGATAGTGAGACAGAAGGAGGCGACTTTAATGAGCCAATGTTTGTT 651
Query 654 CAACATACTGAAGCAATGCTGGAGGAGATTGAACAGATGGAGAAGGAGATTGAAATGGAA 713
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 652 CAACACACTGAAGCAATGCTGGAGGAGATTGACCAGAAGGAGAAGGAGATTGAAATGGAA 711
Query 714 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAGAATAATCCT 773
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 712 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAAAAGAATCCT 771
Query 774 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 831
Query 834 AGTTGCGTGCCTCCTAACTATATGGACAATCAACAAGATCTTAATGAGAGAATGAGAGGA 893
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 832 AGTTGTGTGCCTCCTAACTACATGGACAATCAACAAGATCTTAATGAGAGGATGAGAGGA 891
Query 894 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAACTGATGGAGGAAACTCTT 953
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 892 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAGCTGATGGAAGAAACTCTT 951
Query 954 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCGTGAGGAAAAAG 1013
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 952 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCTTGAGGAAAAAG 1011
Query 1014 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAATATGAAGAAGTTTCAGTT 1073
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAGTATGAAGAAGTTTCAGTT 1071
Query 1074 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACTCTAGAAGAGAAGTGCTA 1133
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1072 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACACTAGAAGAGAAGTGCTA 1131
Query 1134 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1191
Query 1194 GTTTTCATGAAACGATTTCTCAAAGCTGCCCAATCTGACAAGAAGCTTGAGATTTTATCA 1253
|||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1192 GTTTTCATGAAACGCTTTCTCAAAGCTGCCCAATCTGACAAAAAGCTTGAGGTTTTATCG 1251
Query 1254 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTAAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTGAG 1311
Query 1314 CTGGCGGCCTCAGCAATCTACACTGCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGC 1373
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1312 CTTGCGGCCTCGGCAATCTACACTGCTCAGTGTACAGTTAAGGGATTTGAAGAATGGAGC 1371
Query 1374 AAAACCTGTGAGTTTCACACAGGCTACAACGAAAAACAGCTACTGGCATGTGCGAGAAAG 1433
||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1372 AAAACCTGTGAGTTTCACACAGGCTACAAGGAAGAACAGCTACTGGAATGTGCGAGAAAG 1431
Query 1434 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGAAAGTAC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1432 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGGAAGTAC 1491
Query 1494 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGATTTAAT-- 1551
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1492 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGCTTTAATGG 1551
Query 1552 ATTAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTAGAACAAAAAGAGTGTGAG 1611
| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||
Sbjct 1552 AATAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTTGAA-AAA--GAGTGAGAG 1608
Query 1612 AGAAAGAGAGATAGTAGAGCAAGTTGCCCAAA 1643
||| |||||||||| || |||||||||||||
Sbjct 1609 AGAGAGAGAGATAG-AG--CAAGTTGCCCAAA 1637
Score = 178 bits (96), Expect = 1e-43
Identities = 130/145 (90%), Gaps = 8/145 (6%)
Strand=Plus/Plus
Query 1697 ATTCTTCTCTTTCTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGA---A 1753
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1637 ATTCTTCTCTTTTTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGATGCA 1696
Query 1754 -TCT-TCT---GATATCATGCTTTCCTATATTCAACTTGTGAATCGATTCTTGTATAGAC 1808
|| ||| ||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 1697 GTCAGTCTTTTGATATCATGTTTTCCTATATTCAAATTGTGAATCGATCCTTGTATAGAC 1756
Query 1809 TCAGGAAAATCTATGATCCAGTTTG 1833
|||||||||||||||| ||| ||||
Sbjct 1757 TCAGGAAAATCTATGACCCATTTTG 1781
> Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333
Length=1299
Score = 865 bits (468), Expect = 0.0
Identities = 988/1229 (80%), Gaps = 75/1229 (6%)
Strand=Plus/Plus
Query 357 GGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACT-GAAGCGCC-GTCTT 414
|||| ||||||||||||||| ||| ||| ||||||||||||| | | ||| || || ||
Sbjct 94 GGACAGACAAGAAGAGCACTGGGTAATATAAACAAGAACATCA-TCGGAGCTCCGGT-TT 151
Query 415 ACCCTTATGCTGTCAACAAGAGATCAGTT-TCTGA-AAGAGATGGCATTTGT---AATAA 469
| |||| |||||||||||| ||| || || |||| || | |||| || ||| || ||
Sbjct 152 ATCCTTGTGCTGTCAACAAAAGACCA-TTCACTGAGAACA-ATGGGATATGTAACAAGAA 209
Query 470 -A--CCACC---T---GTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGA 520
| ||||| | ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 210 GATTCCACCTGTTCCAGTGCATCGACCAGTTACTAGGAAGTTTGCTGTTCAGTTAGCTGA 269
Query 521 TCATAAGCCACATATCCGTGATGAGGAAACTAAGAAACCAGACTC-AGTTTC-AAGTGAA 578
| || || || |||| | |||||||| |||||| |||||| | |||| || |||
Sbjct 270 GAACAATCCCCAAATCCACAAGGAGGAAACCAAGAAATCAGACTTGA-TTTCGAAC-GAA 327
Query 579 GAACCAGAGACGATTATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAAT 638
| | ||| | || ||||| | | ||| | || | ||||||| ||| ||||
Sbjct 328 GCATTAGATA-GA--ATCATA-ACA-G-ATGT--G-GA-A--GAAGGAG---ACTTTAAT 372
Query 639 GAGCCAATGTTTGTACAACATACTGAAGCAATGCTGGAGGAGATTGAACAGA-TGGAGAA 697
|| ||||||||||| ||||| |||||||| ||||| || |||||||| | || |||||
Sbjct 373 GAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGACC-GAATGGAG-- 429
Query 698 GGAGATTGAAATGGAAGATGCA---G--AC--A-----AAGAAGAAGAGCCTGTGATCGA 745
|| |||||||||||||||| || | | | ||| ||||||| |||| || ||
Sbjct 430 GG-GATTGAAATGGAAGATTCAAATGTTATTGATGTTGAAGTAGAAGAGTCTGTTATGGA 488
Query 746 TATTGAT-GCCTGTGATAAGAATAATCCTTTGGCTGCGGTTGAATATATCCATGATATGC 804
||| || || ||||| ||||| |||||||| |||| |||||||| ||| |||| ||
Sbjct 489 TATAGACAGC-TGTGACAAGAACAATCCTTTAGCTGTAGTTGAATACATCGATGACATAT 547
Query 805 ATACCTTCTACAAGAATTTTGAGAAACTTAGTTGCGTGCCTCCTAACTATATGGACAATC 864
|| |||||||||||| |||| | ||| ||||| || ||||| || ||||| ||||
Sbjct 548 ATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGCGTACCGCCTAATTACATGGAGAATC 607
Query 865 AACAAGATC-TTAATGAGAGAATGAGAGGAATCCTCATTGACTGGTTAATTGAGGTGCAC 923
|||| || | |||| ||||| |||||||||||||| ||||| ||||| |||||||| ||
Sbjct 608 AACATGA-CATTAACGAGAGGATGAGAGGAATCCTTATTGATTGGTTGATTGAGGTACAT 666
Query 924 TACAAGTTTGAACTGATGGAGGAAACTCTTTATCTCACAATCAATGTCATCGACAGATTC 983
||||||||||| ||||||||||| || ||||| || ||||||||| ||||||| |||||
Sbjct 667 TACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATCGATAGATTT 726
Query 984 CTTGCGGTTCATCA--A-ATCGTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTTG 1040
|||||||||||||| | |||| ||||||||||||||||||||| ||||| || ||| ||
Sbjct 727 CTTGCGGTTCATCATCACATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACAGCTATG 786
Query 1041 TTGCTTGCATGTAAATATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGATC 1100
|||||||| || ||||| |||||||||||||||||||| || |||||||| ||| |||||
Sbjct 787 TTGCTTGCTTGCAAATACGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTTATCCTGATC 846
Query 1101 TCTGACAAAGCTTACTCTAG-A-AGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACA 1158
|||||||| |||||| |||| | ||||| | || |||||||||||| ||||||| || |
Sbjct 847 TCTGACAAGGCTTACACTAGGACAGAGAT-T-CTTGATATGGAGAAGTTAATGGCGAATA 904
Query 1159 CCTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGATTTCTCAAAG 1218
|||||||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||
Sbjct 905 CCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTCAAAG 964
Query 1219 CTGCCCAATCTGACAAGAAGCTTGAGATTTTATCATTCTTTATGATCGAGCTTTGCCTTG 1278
|| | ||||||||||| ||||||||| || |||||||||| || ||||||||||| || |
Sbjct 965 CTTCACAATCTGACAAAAAGCTTGAGCTTCTATCATTCTTCATCATCGAGCTTTGTCTAG 1024
Query 1279 TGGAGTATGAGATGCTAGAGTAT-CTTCCATCTAAGCTGGCGGCCTCAGCAATCTACACT 1337
||||||| |||||||| |||| || || ||| || |||| || || || |||||||||
Sbjct 1025 TGGAGTACGAGATGCTTCAGTACACT-CCTTCTCAGTTGGCTGCATCGGCGATCTACACT 1083
Query 1338 GCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGC 1397
|||||| | || ||||| ||||| || || |||||||||||| ||||||| ||| |||||
Sbjct 1084 GCTCAGAGCACGCTTAAAGGATTCGAGGATTGGAGCAAAACCAGTGAGTTCCACTCAGGC 1143
Query 1398 TACAACGAA-AAACAGCTACTGGCATGTGCGAGAAAGATGGTTGCTTTCCATCACAAGGC 1456
|||| |||| |||| ||| |||| |||| ||||||||||||||| ||| |||||||||||
Sbjct 1144 TACACCGAAGAAAC-GCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAGGC 1202
Query 1457 AGGAACAGGGAAGCTCACAGGAGTTCACAG-AAAGTACAACACATCTAAGTTCTG-TCAT 1514
||| | ||||||| | ||||| |||||||| ||| ||||||||||| || || || | ||
Sbjct 1203 AGGGATAGGGAAGTTAACAGGTGTTCACAGGAAA-TACAACACATCCAAATT-TGGTTAT 1260
Query 1515 GCTGCAAGAACTGAACCAGCTGGGTTTCT 1543
|||||||||| ||||||||||||||||||
Sbjct 1261 GCTGCAAGAATTGAACCAGCTGGGTTTCT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5