BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20650.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472299 jgi|Araly1|472299|fgenesh2_kg.1__2253__AT1G20650.1 2455 0.0
Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338 717 0.0
> Ahg472299 jgi|Araly1|472299|fgenesh2_kg.1__2253__AT1G20650.1
Length=1715
Score = 2455 bits (1329), Expect = 0.0
Identities = 1619/1748 (93%), Gaps = 64/1748 (4%)
Strand=Plus/Plus
Query 80 TACTGTTTAAACCTCAGtttttttGTTGTTGTTATAAGATCCTTGTCATTTTTTGTCGTG 139
|||||||||||||| ||||||| || || || | |||||||||||||||||||||||
Sbjct 18 TACTGTTTAAACCTTTTTTTTTTTTTTTTTTTTTTTTGATCCTTGTCATTTTTTGTCGTG 77
Query 140 ATTAGATGTAATTTGTATAATTTTAGTAACTCTTCAGtttttttttGTTTTAAAAATATA 199
|||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| |
Sbjct 78 ATTAGATGGAATTTGTATAATTTTAGTAACTCTTCA----TTTTTT-TTTTAACAATA-A 131
Query 200 TTTTCTCTCTCTCTGTCTTCCTGCAATCTATCGCCGGCCGATTCAATAATTTCGCTTTAC 259
|||| |||||||||||||||||||||||||||| | | |||||||||| ||||||||||
Sbjct 132 TTTT-TCTCTCTCTGTCTTCCTGCAATCTATCG-C-G--GATTCAATAA-TTCGCTTTAC 185
Query 260 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAAGAGAAGAAACAGAGGA 319
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 186 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAGGAGAAGAAACAGA-GA 244
Query 320 AATCAATCTCTTTTTTAGTTTCAGACCCTAAATCCTAGGTTTTGAAGTTTTGTTTCTTTA 379
||||||||||||| |||||||||||||| |||||| | || | || ||||
Sbjct 245 AATCAATCTCTTTCTTAGTTTCAGACCCAAAATCC-------T--AG----G-TT-TTTA 289
Query 380 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGATTTTTCGGAGCTTGG-TTTCT--TGA 436
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 290 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGA-TTTTCGGAGCTTGGTTTTCTCAAAA 348
Query 437 ACCAGCTCCATTTTCTAAAAATTCCTTCTTTAAATCCCCATTGTTGTAAGTCTTAAAGAA 496
|||||||||||||||| | ||| |||||||||||| || | ||| |
Sbjct 349 ACCAGCTCCATTTTCT----A----------AAA---CCATTGTTGTAA-TCCTGAAG-A 389
Query 497 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 449
Query 557 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCATCAGTTCATGGAAGTG 616
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 450 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCGTCAGTTCATGGAAGTG 509
Query 617 ATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCGA 676
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 510 ATACAACAGGAACAGAGTCGATTTCGGGTATTTTAGTAAACGGTAAAGTGAATAGTCCGA 569
Query 677 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAACT 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 570 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAATT 629
Query 737 TCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 796
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TCCGGGAAGTGAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 689
Query 797 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCGAG 856
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 690 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGTCTTCAAGGCAACCGAG 749
Query 857 AGTTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCCAATCTCGTTACATTGA 916
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 750 AATTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCGAATCTTGTTACATTGA 809
Query 917 TCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTGTCTATGAATACATGCCAATGGGAA 976
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 810 TTGGTTACTGTACTTCTGGTGATCAGAGACTTCTTGTCTATGAATACATGCCAATGGGAA 869
Query 977 GCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAACCATTAAGCTGGAATACTC 1036
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 870 GCTTAGAAGATCACCTTTTTGATCTCGAGTCCAATCAAGAACCATTAAGTTGGAATACTC 929
Query 1037 GAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAGCTAACC 1096
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 930 GAATGAAAATCGCGGTTGGTGCAGCTCGCGGAATAGAGTATCTTCACTGCACAGCTAACC 989
Query 1097 CGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAGTTCAGTC 1156
|||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
Sbjct 990 CGCCAGTGATTTACCGCGACTTGAAATCTGCAAACATATTGTTAGACAAAGAGTTCAGCC 1049
Query 1157 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATCGAACTCATGTAT 1216
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1050 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTAGGTGATCGAACTCATGTAT 1109
Query 1217 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAATGAGCGGGAAAT 1276
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1110 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCCGAATACGCAATGAGCGGGAAGT 1169
Query 1277 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1229
Query 1337 GAAAAGCTATTGATTT-AGGTCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1395
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GAAAAGCTATTGATTTGAG-TCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1288
Query 1396 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTACGAGGAAAA 1455
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1289 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTTCGAGGAAAA 1348
Query 1456 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATTATTGCAATGTGTCTTAATGAAGAA 1515
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1349 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATAATCGCAATGTGTCTTAACGAAGAA 1408
Query 1516 GCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCACTAGAGTACTTAGCCGCACAG 1575
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1409 GCTCATTATCGACCATTCATAGGTGACATAGTTGTGGCACTTGAGTACTTAGCCGCACAG 1468
Query 1576 AGCAGATCTCATGAAGCTCGAAACGTCTCATCACCGTCACCAGAGATTTCAAGAACGCCG 1635
||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 1469 AGCCGATCTCATGAAGCTCGAAACGTCTCATCCCCGTCACCAGAGGTTACAAGAACGCCG 1528
Query 1636 CGACGAGACTTGTAAAA-ACTCAAAAA--C---AGCTTTT---AAGAATTTCAGTTTGGT 1686
||||||||||||||||| || |||| | | ||||||| ||||||||||||||| |
Sbjct 1529 CGACGAGACTTGTAAAACACACAAACAGTCTTGAGCTTTTGTTAAGAATTTCAGTTTGAT 1588
Query 1687 GTTGTGTAAAAATGGttttttttGTTTCTTTCTCAG-AAAACAATATATGTTTGGTAAAT 1745
||| |||||||||| |||||||| ||| |||| | | |||||||||||| ||||||||||
Sbjct 1589 GTTATGTAAAAATGTTTTTTTTTTTTTTTTTC-CTGGAAAACAATATATATTTGGTAAAT 1647
Query 1746 GTTTCGTTATTAGTCTCTTTTACTTGATGTATATGGCAATTATGGAAACAATTAAAGTTC 1805
|||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1648 GTTTTGTTTTTAGTTTCTTTTACTTGATGTATATGACAATTATGGAAACAATTAAAGTTC 1707
Query 1806 TTTTATAT 1813
||||||||
Sbjct 1708 TTTTATAT 1715
> Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338
Length=1146
Score = 717 bits (388), Expect = 0.0
Identities = 804/1002 (80%), Gaps = 40/1002 (4%)
Strand=Plus/Plus
Query 616 GATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCG 675
||| ||| ||| |||| ||| | || || || ||||| ||||| ||||||||||| ||
Sbjct 103 GATCCAAGAGGGACAGGGTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCT 162
Query 676 ATACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTA-CAAGAAA 734
| ||| || ||||| |||||||| |||||||||||||||||||| || || | |||| ||
Sbjct 163 AAACCGGGAGGTGGCGCTCGGAGTTTCACGTTCAAGGAGTTAGCCGCCGCCACCAAG-AA 221
Query 735 CTTCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTT 794
|||||||| || ||| || | ||| ||||||| ||||| || || || |||||||||||
Sbjct 222 TTTCCGGGAGGTGAATATGATTGGAAAAGGAGGCTTTGGGAGTGTATACAAGGGACGTTT 281
Query 795 AGATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCG 854
||||||||||||||| ||||| || |||||||| ||||||||||||| |||||| || |
Sbjct 282 AGATTCAGGACAAGTGGTGGCGATCAAGCAATTAAATCCAGATGGGCATCAAGGAAATCA 341
Query 855 AGAGTTTATAGTAGAAGTTCTT-ATGCTTAGCTTATTGCATCATCCCAATCTCGTTACAT 913
||| || ||||| || || || ||||||||| | || |||||||| ||||| || || |
Sbjct 342 AGAATTCATAGTTGAGGT-CTGCATGCTTAGCGTCTTTCATCATCCAAATCTTGTAAC-T 399
Query 914 -TGATCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTG-TCTATGAATACATGCCAAT 971
| ||||||||||| |||||||||| ||| |||||| ||| | |||||||||||||||||
Sbjct 400 CTAATCGGTTACTGCACTTCTGGTGCTCAGAGACTT-TTGGTTTATGAATACATGCCAAT 458
Query 972 GGGAAGCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAA-CCATTAAGCTGGA 1030
||| |||||||||||||| |||| |||||||||| || |||| || || ||||||||
Sbjct 459 GGGTAGCTTAGAAGATCATCTTTATGATCTTGAGCCTGATCA-GATTCCGCTAAGCTGGT 517
Query 1031 ATACTCGAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAG 1090
|||| ||||||||||||||||||||||| ||||| || || ||||||||||| || | |
Sbjct 518 ATACCCGAATGAAAATCGCGGTTGGTGCTGCTCGTGGGATTGAGTATCTTCATTGTAAAA 577
Query 1091 CTAA-CCCGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAG 1149
||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 578 -TAAGCCCATCTGTGATTTACCGTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAA 636
Query 1150 TTCAG--TCCAAAACTCTCGGA-TTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATC-G 1205
|| || || ||| ||||| || ||| ||| | || || ||||||| || || || | |
Sbjct 637 TTTAGCGTC-AAA-CTCTCTGACTTT-GGACTCGCCAAGGTCGGTCCTGTGGG-GAACCG 692
Query 1206 AACTCATGTATCGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAAT 1265
|| ||||| || ||||| |||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 693 GACACATGTGTCCACTCGAGTCATGGGTACTTACGGATACTGTGCTCCAGAATATGCAAT 752
Query 1266 GAGCGGGAA-ATTAACTGTTAAATCGGATATCTACT-GCTTCGGTGTAGTGTTGCTTGAG 1323
|||||| || |||||| |||| ||||||||||| | ||||||||||||||||||||||
Sbjct 753 GAGCGG-AAGATTAACCATTAAGTCGGATATCTA-TAGCTTCGGTGTAGTGTTGCTTGAA 810
Query 1324 CTGATTACTGGGAGAAAAGCTATTGATTT-AGGTCAAAAGCAA--GGCGAGCAGAATCTT 1380
|||||| |||| || || || |||||||| || | ||| ||| || |||||| | |||
Sbjct 811 CTGATTTCTGGCAGGAAGGCCATTGATTTGAG-T-AAAC-CAAACGGAGAGCAGTACCTT 867
Query 1381 GTTACTTGGTCACGTCCATACCTCAAGGATCAGAAGAAGTTTGGACATT-TAGTGGATCC 1439
||| ||||| | || || || |||||||||| ||||| ||||||| || |||| || ||
Sbjct 868 GTTGCTTGGGCTCGACCGTATCTCAAGGATCCTAAGAAATTTGGAC-TTCTAGTTGACCC 926
Query 1440 GTCT-CTACGAGGAAAATACCC-AAGACGGTGT-TTAAACTATGCGATTGCGATTATTGC 1496
|| | ||||| ||||| | | | |||| ||||| |||| ||| |||||||| || | |
Sbjct 927 GT-TGCTACGGGGAAAGTTCTCGAAGA-GGTGTCTTAA-CTACGCGATTGCTATAACCG- 982
Query 1497 A-ATGTGTCTTAATGAAGAAGCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCAC 1555
| ||||| || ||||| ||||| || | || || ||||| || | || ||||||
Sbjct 983 AGATGTGCCTAAATGACGAAGCGAATCACCGGCCAAAAATAGGAGATGTGGTGGTGGCAT 1042
Query 1556 TAGAGTACTTAGCCGCACAGAGCAGATCTCATGAAGCTCGAA 1597
| |||||| ||||| | ||||||| |||| |||||| |||||
Sbjct 1043 TTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAGATCGAA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5