BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20657.1

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg335313 jgi|Araly1|335313|fgenesh1_pg.C_scaffold_1001878           359    3e-98
  Ahg936029 jgi|Araly1|936029|scaffold_500220.1                       71.3    2e-11
  Ahg936026 jgi|Araly1|936026|scaffold_500217.1                       71.3    2e-11
  Ahg931794 jgi|Araly1|931794|scaffold_304251.1                       67.6    2e-10
  Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797          52.8    6e-06


> Ahg335313 jgi|Araly1|335313|fgenesh1_pg.C_scaffold_1001878
Length=465

 Score =  359 bits (194),  Expect = 3e-98
 Identities = 232/251 (92%), Gaps = 0/251 (0%)
 Strand=Plus/Plus

Query  927   GAAGATGCCGAGAAACATCAATGGTCGAGTTATATCTACGTTTTGCCTCCTCCTTGGAAG  986
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  175   GAAGATGCCGAGAAACATCAATGGTCGAGTTATATCTACGTTTTGCCTCCTCCTTTGAAG  234

Query  987   AATATAATTGAGGAGACCAAGTTACGATTTGTTGGAACGAGTGACACGGGGGATATTGTG  1046
             |||||||| || ||| | ||||||||||||||||||| |||||||||||| |||||||| 
Sbjct  235   AATATAATCGAAGAGGCAAAGTTACGATTTGTTGGAATGAGTGACACGGGTGATATTGTA  294

Query  1047  TTGTCGCCATGCAATATCTCCAACTCTTTCTACCTTCTCTACTACAACCCCGAGAGGAAC  1106
             |||||||||| |||||| ||  ||||||||||||||||||||||||| ||||||||||||
Sbjct  295   TTGTCGCCATACAATATATCTGACTCTTTCTACCTTCTCTACTACAATCCCGAGAGGAAC  354

Query  1107  GCTATCACGAGAGTTGAAATCCAAGGAGTGGAAGCCTTCAAGTCTCATAAATCTTACGCC  1166
              ||||||| |||||||||||||||||| |||||||||| ||| |||||||| ||||||||
Sbjct  355   ACTATCACTAGAGTTGAAATCCAAGGAATGGAAGCCTTTAAGCCTCATAAAGCTTACGCC  414

Query  1167  TTTCTAGACTA  1177
             |||||||||||
Sbjct  415   TTTCTAGACTA  425


> Ahg936029 jgi|Araly1|936029|scaffold_500220.1
Length=666

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  663  CCTCTATATGATGGGATATGCATCAATGGTGTTTTGTATTA  703
            ||| |||||||||||||||||||||||||||||||||||||
Sbjct  194  CCTTTATATGATGGGATATGCATCAATGGTGTTTTGTATTA  234


> Ahg936026 jgi|Araly1|936026|scaffold_500217.1
Length=666

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  663  CCTCTATATGATGGGATATGCATCAATGGTGTTTTGTATTA  703
            ||| |||||||||||||||||||||||||||||||||||||
Sbjct  194  CCTTTATATGATGGGATATGCATCAATGGTGTTTTGTATTA  234


> Ahg931794 jgi|Araly1|931794|scaffold_304251.1
Length=476

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 38/39 (97%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  671  TGATGGGATATGCATCAATGGTGTTTTGTATTACCTAGG  709
            ||| |||||||||||||||||||||||||||||||||||
Sbjct  273  TGAAGGGATATGCATCAATGGTGTTTTGTATTACCTAGG  311


> Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797
Length=888

 Score = 52.8 bits (28),  Expect = 6e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  677  GATATGCATCAATGGTGTTTTGTATTAC  704
            ||||||||||||||||||||||||||||
Sbjct  345  GATATGCATCAATGGTGTTTTGTATTAC  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44298829554


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5