BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20670.1
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472300 jgi|Araly1|472300|fgenesh2_kg.1__2254__AT1G20670.1 2837 0.0
Ahg476793 jgi|Araly1|476793|fgenesh2_kg.2__1923__AT1G76380.2 603 2e-171
> Ahg472300 jgi|Araly1|472300|fgenesh2_kg.1__2254__AT1G20670.1
Length=2301
Score = 2837 bits (1536), Expect = 0.0
Identities = 1759/1863 (94%), Gaps = 29/1863 (2%)
Strand=Plus/Plus
Query 539 GGAGAAAAGGCTTCGAAAGCGACAGACATTCTTCAAGGGTCTCCCGTGGAGTCTGGTCCC 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 461 GGAGAAAAGGGATCGAAAGCGACAGACATTCTTCAAGGGTCTCCCGTGGAGTCTGGCCCC 520
Query 599 ACTACTCCTTTGCCAGACAAAAAGTTGTTACTCTTCATCCTCGATAGACTTCAAAAGAAG 658
||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 521 ACTACACCTTTGCCTGACAAAAAGTTGTTAGTCTTCATCCTCGATAGACTTCAAAAGAAG 580
Query 659 GATACTTATGGAGTTTACTCTGACCCGGTTGATCCTGAGGAGCTTCCTGATTATTTTGAG 718
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 581 GATACTTATGGCGTTTACTCTGACCCTGTTGATCCTGAGGAGCTTCCTGATTATCATGAG 640
Query 719 ATTATTAAGAATCCAATGGATTTTAGCACATTGCGGAACAAATTAGACTCTGGAGCATAT 778
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 ATTATTACGAATCCAATGGATTTTAGCACATTGCGGAAGAAATTAGACTCTGGAGCATAT 700
Query 779 TCCACTTTAGAACAATTTGAGAGAGATGTGTTTTTAATATGTACAAATGCAATGGAATAC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GCCACTTTAGAACAATTTGAGAGAGATGTGTTTTTAATATGTACAAATGCAATGGAATAC 760
Query 839 AATTCAGCAGACACTGTATATTATCGACAGGCACGGGCTATACAAGAGTTGGCAAAAAAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 AATTCAGCAGACACTGTATATTATCGACAGGCACGGGCTATACAAGAGTTGGCAAAAAAG 820
Query 899 GATTTTGAGAATTTAAGGCAAGACAGTGATGATGAAGAACCACAAAGCCAACAACAGCAA 958
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 821 GACTTTGAGAATTTAAGGCAAGACAGTGATGATGAAGAACCACAAAGCCAACAACAACAA 880
Query 959 CAGCAGCAACCAAAAGTTGCAAGAAGAGGCCGTCCGCCAAAGAAACATCCTGAACCATCT 1018
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 881 CAGCAGCAACCAAAAGTTGCCAGAAGAGGCCGTCCGCCAAAGAAACAGCCTGAACCATTT 940
Query 1019 TCTATTGACCGCACTGCTTCTGAAATTTCAGCTGATGCTCTCATTCCTGGAGATAGCTCT 1078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TCTATTGACCGAACTGCTTCTGAAATTTCAGCTGATGCTCTCATTCCTGGAGATAGCTCT 1000
Query 1079 AACAAGTTTTCTGGTGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGCCAA 1138
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1001 AATAAGTTTTCTGGTGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGTCAA 1060
Query 1139 GCAGAATCATCAGTTAGAATCAATCATAACAGTGAAACCCAGAGTGGTTGGTCGGTAGAC 1198
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1061 GCAGAATCATCAGTTAGAATCAATCATAACAGCGAAACCCAAAGTGGTTGGTCGGTAGAC 1120
Query 1199 TGGGAGAGCGAATTTCCATCTTCGGTTGTGAAGGCGGTTAACAAGTATGGGATGAAACAT 1258
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1121 TGGGAGAATGAATTTCCATCTTCGGTTGTGAAAGCGGTGAACAAGTATGGGATGAAACAT 1180
Query 1259 TTCAATGTCGATGATAACAGACGCGATACCTACAACCACCTCTCGACTTCTACCCAAGAA 1318
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1181 TTCAATGTGGATGATAACAGACGCGATACCTACAACCACCTCTCGACTTCTACCCAGGAA 1240
Query 1319 CCATCGGTTTTGACAACGCTTGAAGACGAGTTAAAACAGTTGATTCCAGTTGGGCTGAAC 1378
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1241 CCGTCGGTTTTGACAACGCTTGAAGACGAGTTAAAACAGTTAATTCCAGTTGGGCTGAAC 1300
Query 1379 ATGGAGTACGGTTACGCGAAGAGTCTAGCACGATATGCTGCAAATCTTGGTCCTGTTGCC 1438
|||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1301 ATGGAGTACGGTTATGCAAAGAGTCTAGCACGATATGCTGCAAATATCGGTCCTGTTGCC 1360
Query 1439 TGGAAAATTGCATCGAGGAGAATCGAGACTGTATTGCCCTCTGGAATCAAATTTGGTCAA 1498
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1361 TGGAAAATTGCATCGAGGAGAATCGAGACTGTATTGCCCTCTGGAATAAAATTTGGTCAA 1420
Query 1499 GGTTGGGTTGGAGAGAACCCAGCAGGACCTGAAGAGGATGATTCTCAGAAACAAAACATA 1558
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1421 GGTTGGGTTGGAGAGAACCCAGCAGGTCCTGAAGAGGATGATTCTCAGAAACAAAACTTA 1480
Query 1559 TTAATGTCGTCGGGAAAACAAAAGTGTTCTAATGACTTAGCGTCTGATGATCATTCTAAC 1618
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1481 TTAATGTCGTCCGGAAAACAAAAGTGTTCTAATGACTTAGCCTCTGATGATCATTCGAAC 1540
Query 1619 AGAATCCTGTCTCCAACCGCTTCAGTTTCAAGTGCTTTCATAGGAAACAGACATGCTTCC 1678
|||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||
Sbjct 1541 AGAATCCTGTCTCCAACCGCTTCAGTCTCGAGCGCTTTCATAGGAAACAGACATTCTTCT 1600
Query 1679 TCTCAAGCCATCGAAGAGACCACACCACCACCTGCTCGTGTCTTGAATCCAGAAATCGAT 1738
|||||| ||||||||||||| ||||||||||||| | ||||||||||| |||
Sbjct 1601 TCTCAACCCATCGAAGAGACTGCACCACCACCTGC--G-------AATCCAGAAATTGAT 1651
Query 1739 CACCCATCCTCCTCCTCTCACCAAGCAGGACTGCTAATCAAAACAGAGAGCAGCAACGGC 1798
|||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1652 CACCCATCATCCTCCTCTCACCAGGCAGGACCACTAATCAAAACAGAGAGCAGCAACGGC 1711
Query 1799 CTCATCCGCGGATTCAACCATAATGCAAATCAGATGCTCGGAATTGCTAGACAGCAACAA 1858
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1712 CTCATCCGCGGATTCAGCCATAATGCAAATCAGATGCTCGGAATTGCGAGACAGCAACAA 1771
Query 1859 CCAAACGTAAGCAACGAGGCCACACCGGTCTCGCAACAACAAGGCTCATTGTTTCCTTAC 1918
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1772 CCAAACGTAAGCAATGAGGCCACACCGGGCTCGCAACAACAAGGGTCATTGTTTCCTTAC 1831
Query 1919 CCCAAACAAGAATTCCACCGGTTTCCGCCAGACCTTAACGCTAGGCTAGTCTCACCAAAC 1978
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1832 ACCAAACAGGAATTCCACCGGTTTCCGCCGGACCTTAACGCTAGGCTAGTCTCACCGAAC 1891
Query 1979 TCCCCGGGCTCTAATCAGCAGACTGGTTCGTCCTCGTCGCAGCATCCGGATCTGGCATTA 2038
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1892 TCCCCGGGCTCTAATCAGCAGACTGGTTCTTCCTCGTCGCAGCATCCGGATCTGGCATTA 1951
Query 2039 CAGCTGTGAAGATGAGTATTGGATATTTGAAAGAGGAAGAAGAGGCATTTTCCATTGGCT 2098
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1952 CAGCTCTGAAGATGAGTAT-GGATATTTGAAAGAAGAAGAAGAGGCATTTTCCATTGGCT 2010
Query 2099 ATCTCAGCCA-AGGATTTTCTGGAATGAAATCTTGTGGAAAGTCAAGGCTTATTTGTTGT 2157
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2011 ATCTCAGCCATAG-ATTTTCTGGAATGAAATCTTGTGGAAAGTCATGGCTTATTTGTTGT 2069
Query 2158 GACATGAAAATATATGGGACAAGTCTCTCTCTAT-TTGTACAGATTGTTGCAACTTCCAT 2216
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2070 GACATGAAAATATATGGGACAAGTCTCTCTCTCTATTGTACAGATTGTTGCAACTTCCAT 2129
Query 2217 AAtttttttAGGGGTaaaaagagaaaacaagagggaaaagaaaaa-CCACAGGAGTCACG 2275
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 2130 AATTTTTTTAGGGGTAAAAAGAGAAAACAAGAAGAAAAAGAAAAAACCACAGGAGTCACG 2189
Query 2276 CAGGCTGTAGAATATATAGTTTATAtttttttCTCATTTTTCTAGAAATTTTCAGATATA 2335
|||||||||||||||||| ||| | || ||| | | | |||| ||||||||||||
Sbjct 2190 CAGGCTGTAGAATATATAATTT-T-TTCTTT-C-C------C-AGAATTTTTCAGATATA 2238
Query 2336 TTTTCGT-ATGT-C--CTAATCTTGGCCATAAAACAAAGTAATGTTAGGTTTGTGTCCTT 2391
||||||| |||| | |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2239 TTTTCGTTATGTTCTTCTAACCTTGGCCATAAAACAAAGTAATGTTAGATTTGTGTCCTT 2298
Query 2392 GGC 2394
|||
Sbjct 2299 GGC 2301
Score = 427 bits (231), Expect = 2e-118
Identities = 370/428 (86%), Gaps = 46/428 (11%)
Strand=Plus/Plus
Query 53 tagagagagaaagaagagaagaggagagagaaaaaaaTGGGTGAGGTAGCAGATACAATG 112
|||||||||||||| ||| |||| |||||| | |||||||||||||||||||||||||||
Sbjct 1 TAGAGAGAGAAAGAGGAG-AGAGAAGAGAG-AGAAAATGGGTGAGGTAGCAGATACAATG 58
Query 113 ACGAAGAAGAAGAAGAAAGGAAGGCCATCTCTATTAGACCTTCAAAAACGAGCTATcaaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACGAAGAAGAAGAAGAAAGGAAGGCCATCTCTATTAGACCTTCAAAAACGAGCTATCAAA 118
Query 173 caacaacaacaacaattacaacagcaacaacaacaacacaagaacaaccatcaagacgac 232
||||||||||||||| || |||||||||||| || | |||| | ||||||| |||
Sbjct 119 CAACAACAACAACAA---CA---GCAACAACAACA-CA-A-GAAC--C-ATCAAGAAGAC 166
Query 233 gatgaccaccaccacaacaacaacaaTAGATCCGGCTCGAAAAACCCTAATTCTCTC-A- 290
||||||||| | || || |||||||||||||||||| |||||||||||||||||| |
Sbjct 167 GATGACCAC-A--AC--CA-CAACAATAGATCCGGCTCCAAAAACCCTAATTCTCTCCAT 220
Query 291 -A---TC--A-C-C-G-------ATCCAAACGCCGGAACCCTAATTCAAACGACGG--C- 331
| || | | | | ||||||||||||||||||||||||||||| || |
Sbjct 221 CACAATCCCAACTCCGCCTCCCGATCCAAACGCCGGAACCCTAATTCAAACGGCGTATCT 280
Query 332 ---GATTCCCCTTGGATCAAAGACGAAGGTGAAGAC-AACGACGATGACGAGCGGCGAGA 387
||||||||||||||||||||||||| || ||| || ||||||||||||||||| ||
Sbjct 281 TCCGATTCCCCTTGGATCAAAGACGAAGCTGCAGAGGAA-GACGATGACGAGCGGCGGGA 339
Query 388 GAAGAAACATAAGCTTTTACATGGATTGAACTCTCACTCTCATCGACATTCTCCTAATTC 447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 340 GAAGAAACATAAGCTTTTACATGGATTGAACTCTCACTCTCATCGACATTCCCCTAATTC 399
Query 448 TCAATCCG 455
||||||||
Sbjct 400 TCAATCCG 407
> Ahg476793 jgi|Araly1|476793|fgenesh2_kg.2__1923__AT1G76380.2
Length=1906
Score = 603 bits (326), Expect = 2e-171
Identities = 932/1206 (77%), Gaps = 116/1206 (10%)
Strand=Plus/Plus
Query 534 ATACGGGAGAAAAGGCTTCGAAAGCGACAGACATTCTTC-AAG-GG-TCTCCCGTGGAGT 590
||||||||||||||||||||||||||||||||||||||| ||| || || | |||||||
Sbjct 385 ATACGGGAGAAAAGGCTTCGAAAGCGACAGACATTCTTCCAAGAGGGTCACTTGTGGAGT 444
Query 591 CTGGTCCCACTACTCCTTTGCCAGACAAAAAGTTGTTACTC-TTCATCCTCGATAGACTT 649
|| || || | ||||||||||||||||||| | || |||||||| |||||| ||
Sbjct 445 CT------AC-AC-C-TTTGCCAGACAAAAAGTTGCT-CTTGTTCATCCTTGATAGAGTT 494
Query 650 CAAAAGAAGGATACTTATGGAGTTTACTCTGACCCGGTTGATCCTGAGGAGCTTCCTGAT 709
|||||||||||||| |||||||| ||||||||||| | |||||| |||||||||||||||
Sbjct 495 CAAAAGAAGGATACATATGGAGTGTACTCTGACCCTGCTGATCCAGAGGAGCTTCCTGAT 554
Query 710 TATTTTGAGATTATTAAGAATCCAATGGATTTTAGCACATTGCGGAACAAATTAGACTCT 769
|||| ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 555 TATTATGATATTATCAAGAATCCCATGGATTTCAGCACATTGCGGAAGAAATTAGAATCC 614
Query 770 GGAGCATATTCCACTTTAGAACAATTTGAG--A-G-----A-GATGTGTTTTTAATATGT 820
|| ||||| | || ||||||||||||||| | | | || || |||||||||||
Sbjct 615 GGGGCATACACTACCTTAGAACAATTTGAGGCAAGTCTTCAAGACGTATTTTTAATATGC 674
Query 821 ACAAATGCAATGGAATACAATTCAGCAGACACTGTATATTATC-GACAGGCACGGGCTAT 879
|| ||||| |||||||||||||||||||| || ||||| | || |||||||||| || ||
Sbjct 675 ACGAATGCGATGGAATACAATTCAGCAGATACAGTATACT-TCAGACAGGCACGAGCCAT 733
Query 880 ACAAGAGTTGGCAAAAAAGGATTTTGAGAA-TTTAAGGCAAGACAGTGATG-ATGAAGAA 937
| |||||||| |||||||| |||| ||| ||| || ||||| ||||||| | ||||||
Sbjct 734 GCTTGAGTTGGCTAAAAAGGACTTTG-GAAATTTGAGACAAGAAAGTGATGGA-GAAGAA 791
Query 938 CCACAAAGCCAACAA-CAGCAACAGCAGCAACCAAA-AGTTGCAAGAAGAGGCCGTCC-- 993
||| | || | || ||||||| | | || ||| ||| ||||||||||||
Sbjct 792 CCAGT--GTCA-CTTTCA-CAACAGC--CTA--AAGTAGT--CAA-AAGAGGCCGTCCTC 840
Query 994 --G-C-CA------AAGAAACATCCTGAACCATCTTCT-ATTGACCGCACTG-CTTCTGA 1041
| | || |||||||| | ||| | ||||| | ||||| ||||| | |||||||
Sbjct 841 CAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTT-TGATTGATCGCAC-GACTTCTGA 898
Query 1042 AATTTCAGCTGATGCT-C-----TCA-TTC--CTGGAGATAGCTCTAACAAGTTTTCTGG 1092
|| ||||||||||| | ||| || ||||||||||||||| | || || ||
Sbjct 899 TATATCAGCTGATGCAGCAGCACTCACTTATGCTGGAGATAGCTCTAG-A--TTATCCGG 955
Query 1093 TGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGCCAAGCAGAATCATCAGT 1152
| |||||||| ||||||| ||||||||| || |||||| ||||||||| | || ||
Sbjct 956 TTCTTACAATCTAAGAAAAAATCCTCCTTCTTATGGATTCCGTCAAGCAGAAACTTCGGT 1015
Query 1153 TAGAATCAATCATAACAGTGA-AACCCAGAGTGG-TTGGTCGGTAGACTGGGAGA-GCGA 1209
||||||||| |||| || || |||| | ||||| ||| | | |||| ||||||| | ||
Sbjct 1016 TAGAATCAACCATAGTAGCGAGAACCAA-AGTGGCTTGAT-GATAGATTGGGAGAAG-GA 1072
Query 1210 ATTTCCATCTTCGGTTGTGAAGGCGGTTAACAAGTATGGGATGAAACATTTCAATGTCGA 1269
|||||| |||| ||||||||||| || || || || ||||||||| | | ||||||
Sbjct 1073 GTTTCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAA-A----A-TGTCGA 1126
Query 1270 TGATAACAGACGCGATACCTACAACCACCTCTCGACTTC-TACCCAAGAACC-ATCGGTT 1327
|| ||||| || |||||||||||||| ||| ||||| | | ||||| | | || ||
Sbjct 1127 CGAGAACAGGCGAGATACCTACAACCAGAACTCTACTTCCTTGC-AAGAATCTA-CGATT 1184
Query 1328 TTGACAACGCTTGAAGACGAGTTAAAACAGTTGATTCCAGTTGGGCTGAACA-TGGAGTA 1386
|| |||| ||||||||| || ||||||||||| | ||||||||| |||| | || | ||
Sbjct 1185 TTTACAATGCTTGAAGATGATTTAAAACAGTTAACTCCAGTTGGTTTGAAAACTGAA-TA 1243
Query 1387 CGGTTACGCGAAGAGTCTAGCACGATATGCTGCAAATCTTGGTCCTGTTGCCTGGAAAAT 1446
|| || || ||||||||||| |||||||| |||||||||||||||||||| |||| | |
Sbjct 1244 TGGGTATGCTAAGAGTCTAGCGCGATATGCAGCAAATCTTGGTCCTGTTGCTTGGAGATT 1303
Query 1447 TGC-A-T-CGAGGA--GAATCGAGACTGTATTGCCCTCTGGAATCAAATTTGGTCAAGGT 1501
||| | | | |||| ||| | | ||| | || |||||| | ||||||||| ||
Sbjct 1304 TGCCAATGCAAGGATTGAAA--A-ATTGT-TA-CCAACTGGAACCGAATTTGGTCCCGGG 1358
Query 1502 TGGGTTGGAGAGAACCCAGCAG-GACCTGAAGAGGATGATTCTCAGAAA-CAAAACATAT 1559
||||||||||||||||||| || | ||| ||| || | |||| | | |||||| ||
Sbjct 1359 TGGGTTGGAGAGAACCCAGAAGCG-CCTCCTGAGAATCCTCCTCA-ACAGCAAAACGTA- 1415
Query 1560 TAATGTCGTCGGGAAAACAAAAGTGTTCTAATGACTTAGCGTCTGATGATCATT-C---T 1615
| ||||| || ||| || |||||||| |||||||| ||||||||||||||| | |
Sbjct 1416 -A-TGTCG--GG-AAAGCAGAAGTGTTCGAATGACTTTGCGTCTGATGATCATCACCAGT 1470
Query 1616 -AA-CAGAATCCTGTCTCCAACCGCTTCAGTTTCAAG-TGCTTTCATAGGAAACAGACAT 1672
|| ||||||| ||||||| || | || || ||||| | | | ||||||||||||||||
Sbjct 1471 CAAGCAGAATCATGTCTCCGACAACCTCTGTCTCAAGCTCCAT-CATAGGAAACAGACAT 1529
Query 1673 GCTTCC 1678
|||||
Sbjct 1530 TCTTCC 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90197700160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5