BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20680.1
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911904 jgi|Araly1|911904|Al_scaffold_0001_2158 835 0.0
Ahg912936 jgi|Araly1|912936|Al_scaffold_0001_3190 422 3e-117
Ahg911913 jgi|Araly1|911913|Al_scaffold_0001_2167 392 2e-108
Ahg911875 jgi|Araly1|911875|Al_scaffold_0001_2129 159 3e-38
Ahg911870 jgi|Araly1|911870|Al_scaffold_0001_2124 102 5e-21
> Ahg911904 jgi|Araly1|911904|Al_scaffold_0001_2158
Length=753
Score = 835 bits (452), Expect = 0.0
Identities = 632/715 (88%), Gaps = 27/715 (4%)
Strand=Plus/Plus
Query 108 GGTCATAAGTGGGGCATCTTGGAGTCGAAACGGTCAGATTTTGAGTGGTCGGTGCAAAGC 167
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 45 GGTCATAAGTGGGGCATCTTGGAGTCGAAACGGCCAGATTTTGAGTGGTCGGTGCAAAGC 104
Query 168 TAACAACGGAACCTGGTTTGGTATTACTAAAGGTGGCCGAGTCGCTTTTCTCGTGAATAC 227
|||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 105 TAACAACGGAACGTGGTTTGGTATTACTAAACGAGGCCGAGTCGCTTCTCTCGTGAATAC 164
Query 228 ATCGTTGTTGTTGGACCGTGTTAAGTCATACAGCGGCTCGGAGTTGTAT--C---C---- 278
|||||||||||| ||||| ||||| || || ||||||||||||||||| | |
Sbjct 165 ATCGTTGTTGTTAGACCGCCTTAAGGCAAACGGCGGCTCGGAGTTGTATCCCGTTCATTT 224
Query 279 C------GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGTGAAAGTGCATGAAAAGGA 332
| ||||| ||||||||||| ||||||||||||||| ||| | ||||||||||| |
Sbjct 225 CTTGGAGGGCAATATGAGTCCAGACCAGTTTGCCAACGAACTGAGACTGCATGAAAAGCA 284
Query 333 GACTAATGAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGT 392
|| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 285 GAGTAATGAAAGGCATGTCTATAGTCTTATCGTTGCAGACATGACTTCGAGTTCAATGGT 344
Query 393 TCATATCCTGAAACCCTCGGATACTAAGTCTGATGTCGTGATAGAGACTGTTCCGTTTGG 452
||||||||||||||||| |||||||||||| |||||| | |||||||| |||||||||||
Sbjct 345 TCATATCCTGAAACCCTTGGATACTAAGTCGGATGTCATAATAGAGACCGTTCCGTTTGG 404
Query 453 TGTGCATACACTTTCTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACT 512
|||||||||||||||||||||| | || |||||||| ||||| ||| ||||||||| ||
Sbjct 405 TGTGCATACACTTTCTTCTTACCAGGGCCTCGATTCCACAGAATCTTCCAGGGATTCACG 464
Query 513 CCTGAGACGC-TTGTTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAA-CGACAG 570
||||||| || || |||| ||||||| ||| | ||||||||||| || || || | ||||
Sbjct 465 CCTGAGAGGCCTT-TTTAGCCAGATGATTGTTGATTTGGGAAACATTGAAAAATC-ACAG 522
Query 571 ATGGAGGAGATTGCTGGGAGGTTTATGTATGATGCT-CAAGCAGGAAGAGACGCGGTGTT 629
||||||| ||||||||| |||||||||||||||||| || | ||||||||||||||||||
Sbjct 523 ATGGAGGGGATTGCTGGAAGGTTTATGTATGATGCTGCAGG-AGGAAGAGACGCGGTGTT 581
Query 630 T-TACCATAGTAGAGATGAGCATCCTAATGGAAAACTTGGAACGC-AACGCTTTGGAACA 687
| | ||| | ||||||||| |||||| |||||| ||||||| || ||||||||||||||
Sbjct 582 TCT-CCAAACTAGAGATGATCATCCTTCTGGAAATCTTGGAA-GCCAACGCTTTGGAACA 639
Query 688 ACAAGTACGACAGCATTGGTTGTGAAACGCACTAGAG-AAGTGATGCTCTTTGAGAAGTA 746
|||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||
Sbjct 640 ACAAGTACGACAGCATTGGTTGTGAAACGCACCA-AGGAAGTGATGCTCTTTGAGAGGTA 698
Query 747 CATGGAGCAGAATGGTGCATGGAACACGAACAACTTCGCTTTCAACATCCAGTAG 801
||||||| ||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 699 CATGGAGGAGAATGGTGCATGGACCAAGAACCACTTCGCTTTCAACATCCAGTAG 753
> Ahg912936 jgi|Araly1|912936|Al_scaffold_0001_3190
Length=570
Score = 422 bits (228), Expect = 3e-117
Identities = 308/347 (89%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 280 GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGTGAAAGTGCATGAAAAGGAGACTAAT 339
|||| |||||||||||| ||||||||||||||| ||| | ||||||||||| ||| ||||
Sbjct 88 GGCAGCATGAGTCCAGACCAGTTTGCCAACGAACTGAGACTGCATGAAAAGAAGAGTAAT 147
Query 340 GAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATC 399
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 148 GAAAGGCATGTCTATAGTCTTATCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATC 207
Query 400 CTGAAACCCTCGGATACTAAGTCTGATGTCGTGATAGAGACTGTTCCGTTTGGTGTGCAT 459
|||||||||| |||||||||||| |||||| | |||||||| ||||||||||||||||||
Sbjct 208 CTGAAACCCTTGGATACTAAGTCGGATGTCATAATAGAGACCGTTCCGTTTGGTGTGCAT 267
Query 460 ACACTTTCTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACTCCTGAGA 519
||||||||||||||||| || || ||||| ||||| ||| ||||||||| || ||| |||
Sbjct 268 ACACTTTCTTCTTACGAGGGCCTAGATTCCACAGAATCTTCCAGGGATTCACGCCTAAGA 327
Query 520 CGC-TTGTTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAACGACAGATGGAGGA 578
|| || |||| ||||||| ||| | ||||||||||| | || ||| |||||||||||
Sbjct 328 GGCCTT-TTTAGCCAGATGATTGTTGATTTGGGAAACAATGAAAAACCACAGATGGAGGG 386
Query 579 GATTGCTGGGAGGTTTATGTATGATGCT-CAAGCAGGAAGAGACGCG 624
|||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 387 GATTGCTGGGAGGTTTATGTATGATGCTGCAGG-AGGAAGAGACGCG 432
Score = 178 bits (96), Expect = 7e-44
Identities = 119/130 (92%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 673 CAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACTAGAG-AAGTGAT 731
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 442 CAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCA-AGGAAGTGAT 500
Query 732 GCTCTTTGAGAAGTACATGGAGCAGAATGGTGCATGGAACACGAACAACTTCGCTTTCAA 791
||||||||||| |||||||||| ||||||||||||||| || | | |||||||||||||
Sbjct 501 GCTCTTTGAGAGGTACATGGAGGAGAATGGTGCATGGACCAAGCGCCACTTCGCTTTCAA 560
Query 792 CATCCAGTAG 801
|||||||||
Sbjct 561 TATCCAGTAG 570
> Ahg911913 jgi|Araly1|911913|Al_scaffold_0001_2167
Length=789
Score = 392 bits (212), Expect = 2e-108
Identities = 381/461 (83%), Gaps = 18/461 (4%)
Strand=Plus/Plus
Query 350 CCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATCCTGAAACCCT 409
||||||| ||| | || ||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 338 CCTATAGCCTTATAGTCGCAGACATGACTTTGAATTCAATGATTCATATCAGGAAACCCT 397
Query 410 CGGATACTAAGT-CTGA-TGTCGTGATAGAGA-CTGTTCCGTTTGGTGTGCATACACTTT 466
|| | || |||| | | |||| | ||| | | | |||||||||||||| ||||||||||
Sbjct 398 CGCA-AC-AAGTGCCAATTGTCATAATACA-ACCCGTTCCGTTTGGTGTTCATACACTTT 454
Query 467 CTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACT-CCTGAGACGCTTG 525
|| ||| |||||||||||||| ||||| ||| ||||||||||| | ||||| | |||||
Sbjct 455 CTCCTTTGGAAGGTCTCGATTCCACAGAATCTCCCAGGGATTTA-TGCCTGAAAAGCTTG 513
Query 526 TTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAACG-ACAGATGGAGGAGATTGC 584
|||| |||||| || | | ||||||||| | ||||| | ||| ||| | || | |||
Sbjct 514 TTTAGCCAGATAATTCTTGACTTGGGAAACAATGAACAA-GCACATATGAACGATAGTGC 572
Query 585 TGGGAGGTTTATGTATGATGCTCAAGCAGGAAG-AGACGCGGTGTTTTACCATAGTAGA- 642
||||||||||||||||||| || ||| | | || | ||| ||||||| ||| | || |
Sbjct 573 TGGGAGGTTTATGTATGATTCTGAAGGAAG-AGCATACGGGGTGTTTCGCCAAACTATAC 631
Query 643 GATGAGCATCCTAATGGAAAACTTGGAACGCAACGCTTTGGAACAACAAGTACGACAGCA 702
| | | |||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 632 G-TAACCATCCTTCTGGAGAACTTGGAATGCAACGCTTTGGAACAACAAGTACGACAGCA 690
Query 703 TTGGTTGTGAAACGCACTAGAGAAGTGATGCTCTTTGAGAAGTACATGGA-GCAGAATGG 761
||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 691 TTGGTGGTGAAACGCACTAGAGAAGTGATGCTCTTTGAGAGGTACATGGATG-AGAATGG 749
Query 762 TGCATGGAACACGA-ACAACTTCGCTTTCAACATCCAGTAG 801
| ||||||| || | || |||||||||||||||||||||||
Sbjct 750 TACATGGAAGAC-ACACGACTTCGCTTTCAACATCCAGTAG 789
> Ahg911875 jgi|Araly1|911875|Al_scaffold_0001_2129
Length=828
Score = 159 bits (86), Expect = 3e-38
Identities = 545/750 (73%), Gaps = 97/750 (13%)
Strand=Plus/Plus
Query 106 AGGG-TCATAAGTGGGGCATCTTGGAGTCGAAACGGTCAGATTTTGAGTGGTCGGTGCAA 164
|||| ||||||||||||||||||||| | |||| || ||||||||||||||||| | |
Sbjct 111 AGGGATCATAAGTGGGGCATCTTGGAATGGAAATGGCCAGATTTTGAGTGGTCGTTCCGC 170
Query 165 AGCTAACAACGGAACCTGGTTTGGTATTACTAAAGGTGGCCGAGTCGCTTTTCTCGTGAA 224
|| |||| |||||| |||||||||||| ||| ||| || |||||||||||||||||||
Sbjct 171 AGATAACGGCGGAACGTGGTTTGGTATTTCTAGAGGAGGTCGAGTCGCTTTTCTCGTGAG 230
Query 225 TACATCG-T-TGTTGTTGGACCGTGTTAAGT-CATACAG-CGGCTCGGAGTTGTATCC-- 278
| ||| | ||||| |||| || | | || | || |||||| |||||||| ||
Sbjct 231 T--GTCGATACATTGTTAGACCACGTCGA-TCCACA-AGCCGGCTCTGAGTTGTACCCAA 286
Query 279 -------C------GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGT-G-AAAGTGCA 323
| ||||| |||| ||| || | |||||||| || || | | || |
Sbjct 287 TTGAATTCTTGGAGGGCAATATGACTCCCCAGGACTTTGCCAATGACGTGGCACAG-G-G 344
Query 324 TGAA-AAG-GAGACTAATGAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCG 381
|||| ||| | ||| ||| | | | | | ||| ||| | |||||||||||||||| |
Sbjct 345 TGAAGAAGTG-GACGAAT-TATTG--T-CGTTTAGCCTTATAGTTGCAGACATGACTTTG 399
Query 382 AGTTCAATGGTTCATATCCTGAAACCC-TCGGATA-CTAAGTCTG-ATGTCGTGATAGAG 438
| ||||||||||||||| ||||||| | | | | || ||| | ||||| ||||| |
Sbjct 400 AATTCAATGGTTCATATAAGGAAACCCGT-GCA-AGCTGAGT-GGAATGTCATGATACA- 455
Query 439 A-CTGTTCCGTTTGGTGTGCATACACTTTCTTCTTACGAAGGTCTCGAT-TC-T---A-C 491
| | ||||||||||||||||||||||||||| ||||||| ||||||||| | | | |
Sbjct 456 ACCCGTTCCGTTTGGTGTGCATACACTTTCTCCTTACGAGGGTCTCGATGCCATAGAACC 515
Query 492 ---AG--ATT-CT--G--CCAG-G----GATTTACTCCTG--AGACGCTTGTTTACCCAG 534
| ||| | | | || | ||||||||| || |||| || |||| |||
Sbjct 516 TTGGGTAATTATTAAGTACAAGTGTCTTGATTTACTCGTGTTTGACG-TT-TTTAATCAG 573
Query 535 ATGGTTGGT-AATTTGGGAAACGTTCAACAACGACAGATGGAGGAGATTGCTGGGAGGTT 593
||| || | || ||||||||| | || || || | ||||||||||||||| |
Sbjct 574 ATGACTGCTGAA-TTGGGAAACAACCCACTACCACCCCTTAAGGAGATTGCTGGGA---T 629
Query 594 TATGTATGATGCTCAAGCAGGAAG-AGACGCGGTGTTT-TACCATAGTAGAGATGAGCAT 651
|||||| |||| | | | |||| ||||||||||||| | ||| | | | | || ||||
Sbjct 630 TATGTACGATGAT-GCGGAAGAAGAAGACGCGGTGTTTCT-CCA-A-TTG-GCTGCGCAT 684
Query 652 CCTAATGGAAAACTTGGAACGCAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTG 711
|| | || |||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 685 CC------ACAATTTGGAATGCAACTCTTTGGAACAACAAGTACGACAGCATTGGCGGTG 738
Query 712 AAACGCACTAG-AGAAGTGATGCTCTTTGAGAAGTACATGGAG-CAGAATGGTGCATGGA 769
|||||||| | ||| | | ||||||||||| ||||| | | | || ||||| ||||
Sbjct 739 GAACGCACTGGGAGA-GCAAGGCTCTTTGAGAGGTACA-G-ACTC-GA-TGGTGGATGGC 793
Query 770 ACACGA-ACAACTTCGCTTTC-AACATCCA 797
|||| | || |||||| |||| || |||||
Sbjct 794 ACAC-ACACGACTTCGATTTCCAA-ATCCA 821
> Ahg911870 jgi|Araly1|911870|Al_scaffold_0001_2124
Length=801
Score = 102 bits (55), Expect = 5e-21
Identities = 95/114 (83%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 678 CTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACTAG-AGAAGTGATGCTCT 736
|||||||||||||||||||||||||||||| ||| |||||||| | ||| || | | |||
Sbjct 669 CTTTGGAACAACAAGTACGACAGCATTGGTGGTGGAACGCACTGGGAGA-GTAAGGGTCT 727
Query 737 TTGAGAAGTACATGGA-GCAGAATGGTGCATGGAACACGAACAACTTCGCTTTC 789
|||||| ||||||| | | |||||||| ||| |||||| || | |||| ||||
Sbjct 728 TTGAGAGGTACATG-ATGGAGAATGGTACATATAACACGCACGATTTCGATTTC 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5