BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20696.2
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472304 jgi|Araly1|472304|fgenesh2_kg.1__2258__AT1G20696.3 1188 0.0
Ahg472301 jgi|Araly1|472301|fgenesh2_kg.1__2255__AT1G20693.2 468 4e-131
> Ahg472304 jgi|Araly1|472304|fgenesh2_kg.1__2258__AT1G20696.3
Length=861
Score = 1188 bits (643), Expect = 0.0
Identities = 802/874 (92%), Gaps = 29/874 (3%)
Strand=Plus/Plus
Query 10 CATAAGATATTTTAACATCCCCCACTTAACCCTCTCATCTCTCGGCCTCTCACTCGAATC 69
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATCAGATATTTTAACATCCCCCACTTAACCCTCTCATCTCTCGGCCTCTCACTCGAATC 60
Query 70 TCCTTCACAAAGCGTACAAATCACAAACACGTAGTTAttctctcttta--ctctctctat 127
||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||
Sbjct 61 TCCTTCACAAAGCGTACAATTCACAAACACCTTGTTATTCTCTCTTTACTCTCTCTCTAT 120
Query 128 ttctctctcttcaaaccctacgaagatcttcttcttcttcttcAAGAATCGATCATGAAA 187
|||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||
Sbjct 121 TTCTCTCTCTTCAACCCCTACGAAGATCTTCTTCTTCGTCTT---G-ATCGATCATGAAA 176
Query 188 GGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAGCTCTCTGTGACTAAGAAGCCTGCT 247
|||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 177 GGAGGTAAATCCAAGACTGAAACCAGGAGCGCAAAGCTCTCTGTGACTAAGAAGCCTGCC 236
Query 248 AAGGGAGCCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTC 307
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 AAGGGAGGCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGACCTTCCAGTGCCTTC 296
Query 308 TTCGTTTTCATGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCT 367
||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 297 TTCGTTTTCATGGAAGATTTCCGTGAGACGTACAAGAAGGAGCACCCCAAGAACAAGTCT 356
Query 368 GTTGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAG 427
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTCGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAG 416
Query 428 GCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCC 487
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 417 GCTCCTTATGTGGCTAAGGCGGACAAGCGTAAGGTTGAGTATGAGAAGAACATGAAAGCC 476
Query 488 TACAACAAGAAATTGGT--AATTGCCCTAAGGAAGATGAGGAATCTGACAAGTCAGTTTC 545
|||||||||||| ||| || | || ||||||||||||||||||||||||||||| ||
Sbjct 477 TACAACAAGAAACTGGAGGAAG-GTCCAAAGGAAGATGAGGAATCTGACAAGTCAGTCTC 535
Query 546 AGAGGTTAACGATGAGGATGATGCTGAGGATGGCAGTGAAGAGG-A-GG-----A-A-GA 596
|||||| |||||||| ||||||||||||||||| |||||||||| | || | | ||
Sbjct 536 AGAGGTGAACGATGAAGATGATGCTGAGGATGGGAGTGAAGAGGTAAGGGGTTGAGAAGA 595
Query 597 CGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGCTGCAAGGAATCTCTCG 656
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 596 CGATGACTAAGAAGTTGAAGTTATGGTAGCATAATATAGAAGGCTGCAAGGAATCTCTCG 655
Query 657 GATGTTTTT-ATCTCCTCTCTTAAAATGTTAATTCGGGTGGTTAAAGTGGtttttttttt 715
||||||||| ||||| ||||||||| |||| |||||| |||||||||||| | |||||||
Sbjct 656 GATGTTTTTTATCTCTTCTCTTAAATTGTTCATTCGGCTGGTTAAAGTGGGTCTTTTTTT 715
Query 716 ttttctttttctttttCTTACTGATGTTTCGTTTTAGTAAACTATTACCTATCT-CCCAC 774
|||||| ||||||||| | ||||||||||||||||||||| | || |||||||| |||||
Sbjct 716 TTTTCTCTTTCTTTTT-T-ACTGATGTTTCGTTTTAGTAAGCAATCACCTATCTTCCCAC 773
Query 775 TGATTCTACGGGTAATGGAAAAAGTGAATGTAGAATGTTTAGATGGTGAAATGAGAGATT 834
||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||
Sbjct 774 TGATTCTACGGGTAATGGAAAAAGT-A-TGTAGAATGTTTAGATG---AA-TGAGAGATT 827
Query 835 TGTAGCTCTATATAATGAATGATTTAG-TTTTTA 867
|| |||| ||||||||||||||||||| ||||||
Sbjct 828 TGCAGCTTTATATAATGAATGATTTAGCTTTTTA 861
> Ahg472301 jgi|Araly1|472301|fgenesh2_kg.1__2255__AT1G20693.2
Length=842
Score = 468 bits (253), Expect = 4e-131
Identities = 377/436 (86%), Gaps = 12/436 (3%)
Strand=Plus/Plus
Query 173 GAATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAGCTCTCTGTG 232
||||| || ||||||||||||||||| ||| |||||||||||||| | ||||||||||||
Sbjct 175 GAATCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTG 234
Query 233 ACTAAGAAGCCTGCT-AAGG-G-A--GC----CAAAGGTGCTGCTAAAGATCCAAACAAA 283
|| |||||||| ||| |||| | | || ||||| |||||||| ||||||||||||
Sbjct 235 ACCAAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCAGCTGCTAAGGATCCAAACAAA 294
Query 284 CCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGTGACGTACAAG 343
|| |||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 295 CCAAAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAG 354
Query 344 GAGGAGCACCCTAAGAACAAGTCTGTTGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGG 403
|||| |||| |||||||||||||||||| ||||||| ||||||| ||| || ||||||
Sbjct 355 AAGGAAAACCCCAAGAACAAGTCTGTTGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGG 414
Query 404 AAATCCTTGTCTGACTCTGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTT 463
||||||||||| || |||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct 415 AAATCCTTGTCAGATTCTGAGAAAGCTCCTTATGTAGCTAAGGCTGAGAAACGCAAGGTT 474
Query 464 GAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGT--AATTGCCCTAAGGAAGA 521
|| |||||||||||||| ||||| |||||||||||| ||| || | || ||||||||
Sbjct 475 GAATATGAGAAGAACATTAAAGCATACAACAAGAAACTGGAGGAAG-GTCCAAAGGAAGA 533
Query 522 TGAGGAATCTGACAAGTCAGTTTCAGAGGTTAACGATGAGGATGATGCTGAGGATGGCAG 581
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct 534 TGAGGAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAG 593
Query 582 TGAAGAGGAGGAAGAC 597
||||||||| || |||
Sbjct 594 TGAAGAGGACGATGAC 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5