BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20700.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335316 jgi|Araly1|335316|fgenesh1_pg.C_scaffold_1001881 944 0.0
> Ahg335316 jgi|Araly1|335316|fgenesh1_pg.C_scaffold_1001881
Length=621
Score = 944 bits (511), Expect = 0.0
Identities = 584/620 (94%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 18 ggaaaaggagaaaagcaaagaaatagaggagatggatagagagatc-caaaaCGGTGCGT 76
||||||||||||||||||| ||||| |||||||| || |||| | |||||||||||||
Sbjct 3 GGAAAAGGAGAAAAGCAAATTGATAGAAGAGATGGAGAGGGAGA-CGCAAAACGGTGCGT 61
Query 77 ATAGTGGGAGAGTGATGACTGAGGAGCAGATGGAGATTCTCCGTAAGCAGATCGCCGTTT 136
|| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 62 TTAATGGGAGAGTGATGACGGAGGAGCAGATGGAGATCCTCCGTAAGCAGATCGCCGTTT 121
Query 137 ACGCCGTTATTTGTGACCAACTCGTCCTCCTCCACAACTCCCTCTCTTCTTACCATCCAC 196
||||||||||||||||||| |||||||||||||||||||| || |||||| || |||| |
Sbjct 122 ACGCCGTTATTTGTGACCAGCTCGTCCTCCTCCACAACTCTCTTTCTTCTCACTATCCTC 181
Query 197 TCTCATCAGGAGTGAGGCCAATGGTTGGCGGATACTTTGATCCGATGGGGGCATCGTCAA 256
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 182 TCTCATCAGGAGTGAGGCCAATGGTTGGCGGATACTTTGATCCGATGGGGACATCGTCAA 241
Query 257 GTTCTCATAGGATATCGACTAGGCATCGGTGGACTCCGACTTCAACACAGCTTCAGATAC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 GTTCTCATAGGATATCGACTAGGCATCGGTGGACTCCGACTTCAACACAGCTGCAGATAC 301
Query 317 TTGAGAGCATTTACGACGAAGGAAGTGGAACACCGAATCGACGGAGGATTAGAGAGATCG 376
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 302 TTGAGAGCATTTACGAGGAAGGAAGCGGAACACCGAATCGACGGAGGATTAGAGAGATTG 361
Query 377 CGACGGAGCTGTCTGAACATGGACAGATCACGGAGACAAATGTCTACAATTGGTTTCAAA 436
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 362 CAACGGAGCTGTCTGAACATGGAAAGATCACGGAGACAAATGTCTACAATTGGTTTCAGA 421
Query 437 ACCGGCGAGCTCGGTCCAAACGAAAGCAGCCTCAAACGACGACAGCTAATGGTCAGGCTG 496
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 ACCGGCGAGCTAGGTCCAAACGAAAGCAGCCTCAAACGACGACGGCTAATGGTCAGGCTG 481
Query 497 ACGATGTGGCGGTGACAACGGAGGAAAGGAGGAGTTGTGGAGATTCAGGGGGATTAGAGT 556
|||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 482 ACGATGTGACCGTGACAGCGGAGGAAAGGAGGAGTTGTGGAGATTCAGGAGGATTAGAGT 541
Query 557 CTTATGAGCATATACTCTTCCCAAGTCCTGACTTAGGGATTGAGCATTTGTTGAGTATAG 616
||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 542 CTTATGAGCATCTACTCTTCCCAAGTCCTGATTTAGGGATTGAGCACTTGTTGAGTATAG 601
Query 617 GGAAATTTATGGAGACTTAA 636
||||||||||||||| ||||
Sbjct 602 GGAAATTTATGGAGAGTTAA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5