BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20710.1 Length=594 Score E Sequences producing significant alignments: (Bits) Value Ahg312981 jgi|Araly1|312981|fgenesh1_pm.C_scaffold_1001761 843 0.0 > Ahg312981 jgi|Araly1|312981|fgenesh1_pm.C_scaffold_1001761 Length=594 Score = 843 bits (456), Expect = 0.0 Identities = 552/598 (92%), Gaps = 8/598 (1%) Strand=Plus/Plus Query 1 ATGGAGCAAGAGAGCCTAAACGGTAGGTATGGTAG-TAGAGTAATGACGGATGAACAAAT 59 ||||||||||||||||||||||||| || || | | ||||||||||||||| || ||||| Sbjct 1 ATGGAGCAAGAGAGCCTAAACGGTACGTTTGAT-GATAGAGTAATGACGGAGGAGCAAAT 59 Query 60 GGAGACTCTTCGTAAGCAAATCGCCATTTACGCCGTTCTTTGCGACCAGCTCGTCTTCCT 119 |||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 60 GGAGGCTCTCCGTAAGCAAATCGCCATTTACGCAGTTCTTTGTGACCAGCTCGTCTTCCT 119 Query 120 CCACAACTCTCTCTCTTCTGTCCCTCTTCTTTCATCAGGAATGAATCCAATGAGAGG-TG 178 |||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| |||| | Sbjct 120 CCACAATTCTCTTTCTTCTGTCCCACTTCTCTCATCAGGAATGAATTCAATGGGAGGCGG 179 Query 179 AGTATTTTGATCCAATGGTGGCATCGTCAAGCGCTCATGGAATGTCGACTCGGCCTCGAT 238 | || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 A-TACTTTGATCCGATGGTGGCATCGTCAAGCGCTCATGGAATGTCGACTCGGCATCGAT 238 Query 239 GGACTCCTACGACAACGCAACTTCAGATTCTTGAGAACATTTACAAGGAAGGCAGTGGAA 298 ||||||| ||| ||| ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 239 GGACTCCAACGTCAATGCAACTTCAGATTCTCGAGAACATTTACAAGGAAGGAAGTGGAA 298 Query 299 CACCAAATCCGCGGAGGATTAAAGAGATCACGATGGAACTGTCTGAACATGGACAAATCA 358 | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 299 CCCCAAATCCGCGGAGAATTAAAGAGATCACGATGGAACTGTCTGAACATGGAGAAATCA 358 Query 359 TGGAGAAAAATGTATACCATTGGTTTCAAAACCGACGAGCTCGGTCCAAACGAAAGCAAC 418 |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CGGAGAAAAGTGTCTACAATTGGTTTCAAAACCGACGAGCTCGGTCCAAACGAAAGCAAC 418 Query 419 CTCCGACAACGACAATTACCTC-GAGTCAGGCGGATGATGCGGCCGTGACAACAACTGAG 477 ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 419 CTCAGACAACGACAATTACCTCTG-GTCAGGCGGATGATGCGGCCGTGACAACAACTGAT 477 Query 478 GAGAGAGGGAGGTGTGGAG-ATGATTCTGGAGGGTTTGAGTCTTATGAGCATATACTGTT 536 ||||||| ||| ||||||| | |||||||||| |||||||||||||||||||||||| || Sbjct 478 GAGAGAGAGAGTTGTGGAGGA-GATTCTGGAGCGTTTGAGTCTTATGAGCATATACTTTT 536 Query 537 CCCGAGTCCTGATTTAGGGATTGAGCATTTGTTGAATAGGGACAAGTTTATAGACTGA 594 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 537 CCCGAGTCCTGATTTAGGGATTGAGCATTTGCTGAATAGGGACAAGTTTATAGACTGA 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21748685730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5