BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20720.1
Length=3528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921039 jgi|Araly1|921039|scaffold_102320.1 4224 0.0
Ahg472311 jgi|Araly1|472311|fgenesh2_kg.1__2265__AT1G20750.1 1929 0.0
Ahg911864 jgi|Araly1|911864|Al_scaffold_0001_2118 339 1e-91
> Ahg921039 jgi|Araly1|921039|scaffold_102320.1
Length=3556
Score = 4224 bits (2287), Expect = 0.0
Identities = 2488/2583 (96%), Gaps = 21/2583 (1%)
Strand=Plus/Plus
Query 958 AAATTACAGAATGAACTAGAACAGATGAGCGTGGCGCAGCCAATGATTTATCAACCCTTG 1017
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 963 AAATTACAGAATGAACTAGAACAGATGAGCTTGGCGCAGCCAATGATTTATCAACCCTTG 1022
Query 1018 TGTGAAGTAGTAGAGGGACTGATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAA 1077
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGTGAAGTAGTAGAGGGACTAATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAA 1082
Query 1078 CGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTTGAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTTGAG 1142
Query 1138 GAATCTAATATCACTCGTGAATGCTTCCCGATCTTATTGGAATGCTTTACAAAGGCTATC 1197
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1143 GAATCTAATATCACTCGTGAATGCTTCCCAATCTTATTGGAATGCTTTACAAAGGCTATC 1202
Query 1198 AGAACATCAAAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AGAACATCAAAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTC 1262
Query 1258 TTGACACTAGAAGAGTTGTTCTCTTCACTAACGTACTTCTTTTCAAGAAATGGAAGTCAC 1317
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1263 TTGACACTAGAAGAGTTGTTCTCTTCACTTACATACTTCTTTTCAAGAAATGGAAGTCAC 1322
Query 1318 ATCTTAGATTACCAACTGGGTTTGCAACGTTCTACTAAAAGAGGAGATCCTTCTGGTACC 1377
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 1323 ATCTTAGATTACCAACTGGGTTTACAACGCTCTACTAAAAGAGGAGATCCTTCTCGTACC 1382
Query 1378 TGGACGCATACTTTCAGCTTGTGGTGCATGAATCCTGCTGTTGTTTTCAAAGACTTAGCT 1437
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TGGACGCATACTTTCAGTTTGTGGTGCATGAATCCTGCTGTTGTTTTCAAAGACTTAGCT 1442
Query 1438 GATATATCATTATCCGTCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCA 1497
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GATATATCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCA 1502
Query 1498 TCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAAT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAAT 1562
Query 1558 ATGCAGGTGTGGGCGGGTGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGT 1617
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 ATGCAGGTGTGGGCTGGCGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGT 1622
Query 1618 TATAAAACAGCTGATGCATATTCATTCCAGGATGCTCTGGGGAAATCATTGGAAGAAATC 1677
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1623 TATAAAACAGCTGATACATATTCATTCCAGGATGCTCTTGGGAAATCATTGGAAGAAATC 1682
Query 1678 TGCACTATTGTACCAGGTGGCTCTCTTG-TATTCTTTCCAAGCTATAAGTTGATGGAAAA 1736
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1683 TGCACTATTGTACCAGGAGGCTCTC-TGATATTCTTTCCAAGCTATAAGTTGATGGAAAA 1741
Query 1737 ACTCTGCATGCGTTGGCGTGAAACTGAGCAGTGGTCTCGGCTCTGCTTGAAAAAGGACCT 1796
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1742 ACTCTGCACGCGTTGGCGTGAAACTGGGTAGTGGTCTCGGCTCTGCTTGAAAAAGGACCT 1801
Query 1797 TTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTTGATTCTGTTCTGAAGGGATATTA 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 TTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTTGATTCTGTTCTGAAGGGATATTA 1861
Query 1857 TGATTCTATACGCGGGAAGAATAAAATAATTGGAAGAAATAGAAGAGCTAAGAAAGCAGG 1916
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1862 TGATTCTATACGCGGGAAGAATAAATTAGTTGGAAGAAATAGAAGAGCTAAGAAAGCAGG 1921
Query 1917 GCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTGTG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1922 GCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTATG 1981
Query 1977 TAGAGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAAT 2036
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 TAGGGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAAT 2041
Query 2037 TGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATATAA 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 TGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATATAA 2101
Query 2097 TGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGC 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 TGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGC 2161
Query 2157 CTATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGC 2216
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2162 CTATCGTGCTCTAAATCAAGCTGCAGGAAGATGTATCCGGCATAGGTTTGATTATGGTGC 2221
Query 2217 CATCATATTCTTAGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATG 2276
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2222 CATCATATTCTTAGATGAGCGATACAAAGAGCAAAGGAACAGAGCGTCTATTTCAAAGTG 2281
Query 2277 GCTAAGGCAGTCTATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGCTTGAGATC 2336
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2282 GCTAAGGCAGTCTATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGGTTGAGATA 2341
Query 2337 TTTTTTCAACAGTGTCAAGGAGCAAGTTGACAGTAAGATGTTAGGGTCCCAGGAGGATTC 2396
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2342 TTTTTTCAACAGTGTCAAGGAGCAAGTTGACAGTAAGATGTTAGGGTCCCAGGACGATAC 2401
Query 2397 TGTTGAGAAGAACTTTTCCTCGGAAAAACAAAGCAAAGAATTCAGAAGGAAGGAAAATCA 2456
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 2402 TGTTGAGAAGAACTTTTCCTTGGAAAACCAAAGCAAAGAATACAGAAGGAAGGAAAATCA 2461
Query 2457 GATTCAGAACAAATCTAGTCAAGTGGAACCAAAAGTGGAGGAC-T--A---C-ACA-AA- 2507
||||||||||||||||||||||||||||||||||||||||||| | | | ||| ||
Sbjct 2462 GATTCAGAACAAATCTAGTCAAGTGGAACCAAAAGTGGAGGACGTGGAGGACTACACAAA 2521
Query 2508 TTCGAATCCAAAATATCATTTTAT-GTACGAAAGCAAAGCCTTTGGGTATCACAGAGATG 2566
||||||||||||||||| |||||| | | |||||||||||||||||| ||||||||||||
Sbjct 2522 TTCGAATCCAAAATATCCTTTTATAG-ATGAAAGCAAAGCCTTTGGGGATCACAGAGATG 2580
Query 2567 TGAAACCAAAAATAGCTGAAGATTTGAGATCCATGGGGCATTCGGCGCAGACATTTGTTC 2626
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2581 TGAAACCAAAAATAGCTGAAGATTTGAGATACATGGGGCATTCGGCGCAGACATTTGTTC 2640
Query 2627 AAGTTAAAGAGGAAGCTGAATGCTGTAGAGAAGTTATTGACCTTGAGTGCGGTGTCCAAC 2686
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 AAGTTAAAGAGGAAGTTGAATGCTGTAGAGAAGTTATTGACCTTGAGTGCGGTGTCCAAC 2700
Query 2687 CTGATCTTGGTTACTGTGAGGTATCATCGGTGACCAACTGTGATGAAGCTCCAGAAACAT 2746
|||| | ||| || |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2701 CTGAGCCTGGGTATTGTGAGGTATCATCGGTGACCAACTGTGATGAAGATCTAGAAACAT 2760
Query 2747 CTTTTGTCCAGGAAA-CATCTGGTATGATCAATGGTATTTCAGTAGCCAGTCCATGTTCT 2805
|||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2761 CTTTTGTCAAGGAAAGC-TCTGGTATGATCAATGGTATTTCAGTTGCCAGTCCATGTTCT 2819
Query 2806 TGCTCGATGAATGAAAGCTCTAGTCCAGCAACAGTAGGTCTGAGATCTCCGGGGTCTCCT 2865
|||||| |||||||||||||||||||| ||||| |||||| |||||||||| ||||||||
Sbjct 2820 TGCTCGGTGAATGAAAGCTCTAGTCCAACAACAATAGGTCGGAGATCTCCGAGGTCTCCT 2879
Query 2866 GATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCTCCTCTTGGAACC 2925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2880 GATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCTCCTCTTGGAGCT 2939
Query 2926 GAGTCGTCTGTAGTAGCAACTTCTGAGAGATATTCATTTGGTGGCACCCGTAGTTTGACT 2985
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2940 GAGTCGTCCGTAGTAGCAACTTCTGAGAGATATTCCTTTGGTGACACCCGTAGTTTGACT 2999
Query 2986 CTAGAAGCAGAGTCATCTTTCAACATGAGCGTTAATTCTCAAGCTTTGAAGCGAAGAAAG 3045
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3000 CTAGAAGCAGAGTCATCTTTCAACATGAGTGTTAATTCTCAAGCTTTGAAGCGAAGAAAG 3059
Query 3046 TTTACCAGCTCTCCTGTCATTGACCTTGAAGTCGAAAACAGTGATGCTCCTAGGCCTAAT 3105
||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |
Sbjct 3060 TTTACCAGCTCTCCTGTCATTGACCTTGAAGACGAAAACAGCGATGCTCCTA-----A-T 3113
Query 3106 TGCTCAATGGTTAATCAGAGACTCTGCAGAAAATTTGAAGGCTTAAAAGGTCAGGGTATT 3165
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 3114 TGCTCAATGGTTAATCAGAGACTCTGCAGAAAATTTGAAGGCTCAAAAGGTCAGGGAATT 3173
Query 3166 TGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTATTGCCCTTTCTGCAGCATCCCA 3225
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 3174 TGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTCTTGCCCTTTCTGCAGTATTCCA 3233
Query 3226 AACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTGAGC 3285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3234 AACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTGAGC 3293
Query 3286 AAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACCAATGAAGCTGCAAGCAAGGATTCA 3345
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3294 AAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACTAATGAAGCTGCAAGCAAGGATTCA 3353
Query 3346 ACGTTAAAGCACAAGGAACCTCTTGCTGAGACTAATGCAGCTGTGGATAAGAGTGATGTG 3405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3354 ACGTTAAAGCACAAGGAACCTCTTGCTGAGACTAATGCAGCTGTGGATAAGAGTGATGTG 3413
Query 3406 TTAAAGTCAATAGACAGATTTGCATACTCCCCAAATCAGCAGCAAGAATCAGGAGGCTGG 3465
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3414 TTAAAGTCAATAGAAAGATTTGCATACTCCCCAAATCAGCAGCAAGATTCAGGAGGCTGG 3473
Query 3466 AGGACTACAAAATCAAAGTTGAGACTACCTAAACGAAATTTGCCAACGAGCAAGAAGGCC 3525
||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||
Sbjct 3474 AGGACTACAAAATCAAAGTTGAGACTACCAAAACGCAATTTTCCAACGAGCCAGAAAACC 3533
Query 3526 TAG 3528
|||
Sbjct 3534 TAG 3536
Score = 1035 bits (560), Expect = 0.0
Identities = 590/605 (98%), Gaps = 0/605 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCCTCAACCAGCAAATCGGATTCAAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTTCCACAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 80
Query 61 AAAAACCCTAAAAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 81 AAAAACCCTAAAAATGTCTACCAGATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 140
Query 121 TATGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TACGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 200
Query 181 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGCACGGGCAAATCTCTGTCATTG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGTACGGGCAAATCTCTGTCATTG 260
Query 241 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTATAAATCCCGGCTTCTAAAAGGAAATTTG 300
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 261 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTACAAATCTCGGCTTCTGAAAGGGAATTTG 320
Query 301 TCTCATTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCATGGAGGTGGATTC 360
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 321 TCTCACTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCACGGAGGCGGATTC 380
Query 361 ATACCGGAAACGCAACCCTCAGATACTCCTGCATCTACAAATGTGGAGAAAGCTGAAACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATACCGGAAACGCAACCCTCAGATACTCCTGCATCTACAAATGTGGAGAAAGCTGAAACT 440
Query 421 GCAACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GCAACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAG 500
Query 481 ATTACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTG 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 ATTACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTGCCCATGGCTGTATTG 560
Query 541 GCTTCAAGAAAACATTACTGCACGAATCGTCATGTACTTGGGAAAGACAATGTAGATGAT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 561 GCTTCAAGAAAACATTACTGCACTAATCGTCATGTACTTGGGAAAGACAATGTAGATGAT 620
Query 601 GAATG 605
|||||
Sbjct 621 GAATG 625
Score = 433 bits (234), Expect = 5e-120
Identities = 240/243 (99%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 654 GAACGTCAATAAAATCACATCTCATCCATCACTTCAGCCCAGAGGTCACAATGAGGTTCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GAACGTCAATAAAATCACATCTCATCCATCACTTCAGCCCAGAGGTCACAATGAGGTTCA 685
Query 714 TGATATTGAAGATCTTGTAAAAGTTGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TGATATTGAAGATCTTGTAAAAGTTGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTC 745
Query 774 CTGGTCAATGGCTGAGAACGCACAATTGGTGTTTTGCCCTTATTCCTATATAGTTAATCC 833
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 746 CTGGTCAATGGCGGAGAACGCACAATTGGTTTTTTGCCCTTATTCCTATATAGTTAATCC 805
Query 834 TGTCATTCGAGCAGGAGTTGAAGTAGATCTGAAAGGAGCGATTATCATTTTTGATGAAGC 893
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 806 TGTCATTCGAGCAGGAGTTGAAGTAGATCTGAAAGGAGCGATTATAATTTTTGATGAAGC 865
Query 894 ACA 896
|||
Sbjct 866 ACA 868
Score = 54.7 bits (29), Expect = 5e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 898 AATATGGAAGACATTGCTCGTGAAGCAGG 926
|||||||||||||||||||||||||||||
Sbjct 933 AATATGGAAGACATTGCTCGTGAAGCAGG 961
> Ahg472311 jgi|Araly1|472311|fgenesh2_kg.1__2265__AT1G20750.1
Length=3417
Score = 1929 bits (1044), Expect = 0.0
Identities = 1567/1814 (86%), Gaps = 58/1814 (3%)
Strand=Plus/Plus
Query 441 AATTCCTACCATATACTATGCTTCACGAACTCATTCTCAGATTACTCAAGTGATTCGTGA 500
|||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 366 AATTCCTACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCATTCGTGA 425
Query 501 GTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTGGCTTCAAGAAAACATTACTG 560
|||| ||||||| ||||||||||| |||||| ||||||||| |||||| |||| ||||||
Sbjct 426 GTATCGGAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACGTTACTG 485
Query 561 CACGAATCGTCATGTACTTGGGAAAGACAATGTAGATGATGAA-TGTCGGTTACTCTTAA 619
||| ||| ||||||||| |||||||| ||||| || || || |||||||| ||| |||
Sbjct 486 CACCAATAGTCATGTACAGGGGAAAGAGAATGTTGACGA-AAAGTGTCGGTTGCTCCTAA 544
Query 620 AAGATAAGGCAAACATACAATGTTCTGAATTC-AAGAACGTCAATAAAATCACATCTCAT 678
|||||||| ||||||| ||||| |||| ||| ||| |||| | | ||| | || |
Sbjct 545 AAGATAAGAAAAACATAAAATGTGCTGAGTTCAAAG-GCGTCGGTCAGATCTTAGCTTAC 603
Query 679 CCATCACTTCAGCCCAGA-GGTCACAATGAGGTTCATGATATTGAAGATCTTGTAAAAGT 737
|||||||||||| | | | |||||||||| |||||||||||||||||||||||||||| |
Sbjct 604 CCATCACTTCAG-CAAAACGGTCACAATGGGGTTCATGATATTGAAGATCTTGTAAAAAT 662
Query 738 TGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTCCTGGTCAATGGCT-GAGAACGCAC 796
|||||||| ||||| |||||| |||||||||||||||||| ||| | | ||| ||||
Sbjct 663 TGGAAAAACTGTTACAGGCTGTCCATATTTTGCTTCCTGGAAAAT-GTTGGAGGTTGCAC 721
Query 797 AATTGGTGTTTTGCCCTTATTCCTATATAGTTAATCCTGTCATTCGAGCAGGAGTTGAAG 856
||||||| ||||||||||||||||||||| || |||||||||||| | ||| | | ||
Sbjct 722 AATTGGTTTTTTGCCCTTATTCCTATATAATTGATCCTGTCATTC--G-AGGCG--G-AG 775
Query 857 TAGATCTGA-AAGGAGCGATTATCATTTTTGATGAAGCACACAATATGGAAGACATTGCT 915
|| |||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 776 TAAATCT-ACAAGGAGCGATTATAATTTTTGATGAAGCACATAATATGGAAGACATTGCT 834
Query 916 CGTGAAGCAGGTAGCATTAATTTGGAAGAAGACACTCTTTTCAAATT-ACAGAATGAACT 974
||||||||||| |||||||| |||||||||| | |||||||||||| | ||||||||||
Sbjct 835 CGTGAAGCAGGAAGCATTAACATGGAAGAAGATATTCTTTTCAAATTGA-AGAATGAACT 893
Query 975 AGAACAGATGAGCGTG-GCGCAGCCA-ATGATTTATCAACCCTTGTGTGA-AGTAGTAGA 1031
||||||| |||| | | | ||||| | ||| ||| || |||||| | | |||||||||
Sbjct 894 AGAACAGGTGAGTGAGAATG-AGCCAGA-GATATATGAATCCTTGTAT-ATAGTAGTAGA 950
Query 1032 GGGACTGATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAACGTGATTTTCAGCA 1091
|||| |||||||||||||||| ||||||||||| ||| ||| ||||||||||||| ||||
Sbjct 951 GGGATTGATAAGCTGGATTGGGAGAAAAAAGGATTCACTAGTAAAACGTGATTTTGAGCA 1010
Query 1092 TTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTT-GAGGAA-TCTAATATC 1149
|||||||||| ||||||||||||| |||||||| |||| || ||||| || ||||||
Sbjct 1011 CTATTTCTCTAATTGGACTGGAGACAGAGCTTTAAAAGAG-TTAAAGGAATTC-AATATC 1068
Query 1150 ACTCGTGAATGCTTCCCGATCTTATTGGAATGCTTT-ACAAAGGCTATCAGAACATCAAA 1208
|||| |||| |||||| | |||| || ||| ||| || || || |||| || |||| |
Sbjct 1069 ACTCCTGAAAACTTCCCAAACTTAGAGGCATGTTTTAACCAA-GCGATCACAAAATCAGA 1127
Query 1209 GG-AGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTCTTGACACTAG 1267
|| | |||||||||| | |||| || ||||||||| ||||||||||||| |||||||
Sbjct 1128 GGCA-TCAGAAATGGACCCGGATAAGCCTTATTTGAGTGGGATATCTGTCTCCACACTAG 1186
Query 1268 AAGAGTTGTTCT-CTTCACTAACGTACTTCTTTTCAAGAAATGGAAGTCACATCTTAGAT 1326
|||||||||| | || |||| || ||||||||||||||||||||||||||| || |||||
Sbjct 1187 AAGAGTTGTT-TGCTACACTTACATACTTCTTTTCAAGAAATGGAAGTCACGTCCTAGAT 1245
Query 1327 TACCAACTGGGTTTGCAACGTTCTACTAAAAGAGG----AGATCCTTCTGGTACCTGGAC 1382
|| || ||||||| ||||| ||| |||| ||||| ||| | ||| |||||
Sbjct 1246 TATGAAATGGGTTTACAACGGTCTGCTAAGAGAGGTACAAGA-GATAATGG---GTGGAC 1301
Query 1383 GCATACTTTCAGCTTGTGGTGCATGAATCCTG-CTGTTGTTTTCAAAGACTTAGCTGATA 1441
|||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1302 GCATACTTTCAGTTTGTGGTGCATGAATCC-GTCTGTTGTTTTCAAAGACTTAGCTGATC 1360
Query 1442 TATCATTATCCGTCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCATCTG 1501
| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1361 TTTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTCTTTCTCATCTG 1420
Query 1502 AACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAATATGC 1561
||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1421 AACTTGGGATGCAATTTGGCACTTGTTTAGAGGCTCCACATGTGATTGATCCTAATATGC 1480
Query 1562 AGGTGTGGGCGGGTGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGTTATA 1621
|||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1481 AGGTGTGGGCTGGTGCAATCTCCAGTGGTCCTGGTAATTTTCCTCTAAATGCAAGTTATA 1540
Query 1622 AAACAGCTGATGCATATTCATTCCAGGATGCTCTGGGGAAATCATTGGAAGAAATCTGCA 1681
||||||||||||||||| |||||||||||||||| |||||||| |||||||| || ||||
Sbjct 1541 AAACAGCTGATGCATATGCATTCCAGGATGCTCTAGGGAAATCGTTGGAAGAGATTTGCA 1600
Query 1682 CTATTGTACCAGGTGGCTCTCTTGTATTCTTTCCAAGCTATAAGTTGATGGAAAAACTCT 1741
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1601 GTATTGTACCAGGAGGCTCTCTGGTATTCTTTCCAAGCTATAAGTTGATGGAAAAACTCT 1660
Query 1742 GCATGCGTTGGCGTGAAACT-GAGCAGTGGTCTCGGCTCTGCTTGAAAAAGGACCTTTTT 1800
||| |||||||| ||||||| || || |||||||||||||||||||||| |||| |||||
Sbjct 1661 GCACGCGTTGGCATGAAACTGGA-CAATGGTCTCGGCTCTGCTTGAAAAGGGACTTTTTT 1719
Query 1801 GTTGAACCAAGAGGAGGCGCCCAGGACGAATTT-GATTCTGTTCTGAAGGGATATTATGA 1859
| |||||||||||||| ||| |||||| |||| || |||||||||||| |||||||||
Sbjct 1720 ATCGAACCAAGAGGAGGAGCCAAGGACG-ATTTCGAAACTGTTCTGAAGGAATATTATGA 1778
Query 1860 TTCTATACGCGGGAAGAATAA-A-AT--AATTGGAAGAAATAGAAGAGCTAAGAAAGCAG 1915
||| ||| || || | ||||| | || || |||||||||||| |||| |||||||||||
Sbjct 1779 TTCGATAAGC-GG-A-AATAACAGATCGAA-TGGAAGAAATAGCAGAGTTAAGAAAGCAG 1834
Query 1916 GGCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAG-GGAGCTGCATTTCTTGCAGTG 1974
|| || ||| ||||||| ||||||||||||| ||| || ||| ||||||||||||||||
Sbjct 1835 GGTCTGTTATAACTGAGGCTCAAGATGATTCTAAG-AGAGGATCTGCATTTCTTGCAGTA 1893
Query 1975 TGTAGAGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATA 2034
|||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||
Sbjct 1894 TGTAGAGGAAAGGTTTCAGAAGGGCTTGATTTTTCTGATGACAATGCCAGGGCAGTGATA 1953
Query 2035 ATTGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATAT 2094
|||||||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||
Sbjct 1954 ATTGTTGGCATTCCATTTCCAAACTTGGGCGATATTCTAGTCGAACTAAAGAGGAAATAT 2013
Query 2095 AATGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAG 2154
||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2014 AATGATACCAACAAATCATCTAAAAAACTTCTTGGAGGGAGTGAGTGGTATTGCCAACAG 2073
Query 2155 GCCTATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGT 2214
|| || ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2074 GCGTACCGTGCTTTAAATCAAGCAGCAGGGCGATGTATCCGGCATAGGTTTGATTATGGT 2133
Query 2215 GCCATCATATTCTT 2228
||||||||||||||
Sbjct 2134 GCCATCATATTCTT 2147
Score = 446 bits (241), Expect = 7e-124
Identities = 287/310 (93%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCCTCAACCAGCAAATCGGATTCAAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
|||| | || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCCGCAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 61 AAAAACCCTAAAAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAACCCTAAAAACGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
Query 121 TATGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TATGGAACCCAGCTTGCTTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGCGA 180
Query 181 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGCACGGGCAAATCTCTGTCATTG 240
|| ||||||| |||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct 181 GATGGTCACTCCCACGCTTTGCTCGAGTCTCCCACTGGAACAGGCAAATCTCTGTCTTTG 240
Query 241 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTATAAATCCCGGCTTCTAAAAGGAAATTTG 300
|||||||| ||||||||||||||| ||| ||||||||| ||| ||| || |||||||||
Sbjct 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTATAAATCGCGGTTTCCGAATGGAAATTTG 300
Query 301 TCTCATTCGA 310
|||||||||
Sbjct 301 ACTCATTCGA 310
Score = 326 bits (176), Expect = 9e-88
Identities = 231/258 (90%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 3104 ATTGCTCAATGGTTAATCAGAGACTCTGCAGAAAATT-TGAAGGCTTAAAAGGTCAGGGT 3162
|||||||| |||||||||||||||||||||| || || |||| || |||||||||||||
Sbjct 2969 ATTGCTCATTGGTTAATCAGAGACTCTGCAG-AAGTTCTGAAATCTCAAAAGGTCAGGGT 3027
Query 3163 ATTTGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTATTGCCCTTTCTGCAGCATC 3222
||||||| ||| |||||||||||||||||||| ||||||| |||||||||||| || ||
Sbjct 3028 ATTTGGTCCGAACAAGATGGATGTGTTTTCAAAACTATCTTTTGCCCTTTCTGTAGTGTC 3087
Query 3223 CCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTG 3282
|||||||| || || |||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 3088 CCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTGATTCATCAAACGCCCAGTTTATG 3147
Query 3283 AGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACCAATGAAGCTGCAAGCAAGGAT 3342
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 3148 AGCAAAATTTTATTCTTTGCTGATCATCTAGAAGTCACGAATGATGCTGCAAGCAAGCAA 3207
Query 3343 TCAACGTTAAAGCACAAG 3360
||||||||| |||||||
Sbjct 3208 ACAACGTTAACGCACAAG 3225
Score = 219 bits (118), Expect = 2e-55
Identities = 149/164 (91%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 2229 AGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATGGCTAAGGCAGTC 2288
||||||||||||| | ||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 2187 AGATGAGCGATACCGACAACCAAGGAACAGAGCTTCTATTTCAAAGTGGCTAAGGCAGTC 2246
Query 2289 TATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGCTTGAGATCTTTTTTCAACAG 2348
||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||
Sbjct 2247 TATCAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGATTAAGATATTTTTTCAACAG 2306
Query 2349 TGTCAAGGAG-CAAGTTGACAGTAAGATGTTAGGGTCCCAGGAG 2391
|||||||||| || |||||||||||||| |||| |||||| |||
Sbjct 2307 TGTCAAGGAGACA-GTTGACAGTAAGATATTAGAGTCCCATGAG 2349
> Ahg911864 jgi|Araly1|911864|Al_scaffold_0001_2118
Length=1545
Score = 339 bits (183), Expect = 1e-91
Identities = 362/441 (82%), Gaps = 41/441 (9%)
Strand=Plus/Plus
Query 1873 AAGAATAAAATAATTGGAAGAAATAGAAGAGCTAAGAAAGCAGGGCCTATTAAAACTGAG 1932
||||| | | || ||||||||||||| |||| |||||||||| || || || |||||||
Sbjct 640 AAGAACAGATTAGTTGGAAGAAATAGCAGAGTTAAGAAAGCATGGTCTTTTCTAACTGAG 699
Query 1933 ACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTGTGTAGAGGAAAGGTTTCA 1992
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 700 GCTCAAGATGATTCCAAGAAAGGATCTGCATTTCTTGCAGTGTGTAGGGGAAAGGTTTCA 759
Query 1993 GAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAATTGTTGGCATTCCATTT 2052
|||||| |||| || | || || || || ||| ||||||||||||||||||
Sbjct 760 GAAGGGCTTGA---TGAT--TG----CG-CA---CA--GATGATTGTTGGCATTCCATTT 804
Query 2053 CCAAAC---T-T-AC--ATGA---TATT--CA---AGTCGGACTGAAGAAAAAATATAAT 2097
|||||| | | || || | | || || ||||| ||| |||| |||||||||
Sbjct 805 CCAAACTTTTCTAACGAATCACTTTCTTGCCAGGTAGTCGAACTAAAGAGAAAATATAAG 864
Query 2098 GATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGCC 2157
|||||| |||| |||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 865 GATACCAACAAATCATCTAAAA-AC--CTTGGAGGGAGTGAGTGGTATTGCCAACAGGCG 921
Query 2158 TATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGCC 2217
|||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 922 TATCATGCTTTAAATCAAGCAGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGCC 981
Query 2218 ATCATATTCTTAGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATGG 2277
|||||||||||| || | ||| ||| ||| |||||||||||||||||||||| ||
Sbjct 982 ATCATATTCTTA-AT-ACCGA--CAAC---CAA-GGAACAGAGCGTCTATTTCAAAGTGA 1033
Query 2278 CTAAGGCAGTCTATCAAAGTG 2298
|||||||| ||||||||||||
Sbjct 1034 CTAAGGCAATCTATCAAAGTG 1054
Score = 128 bits (69), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 3221 TCCCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGAT-TCATCAAATGTCCAGTTT 3279
|||||||||| || || |||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1448 TCCCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTG-TGTCATCAAACGTCCAGTTT 1506
Query 3280 TTGAGCAAAATTTTGTTCTTTGCTGATCATC 3310
||||||||||||||||||||||||||||||
Sbjct 1507 ATGAGCAAAATTTTGTTCTTTGCTGATCATC 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133239563073
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5