BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20730.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120 852 0.0
Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1 665 0.0
Ahg911862 jgi|Araly1|911862|Al_scaffold_0001_2116 106 3e-22
> Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120
Length=723
Score = 852 bits (461), Expect = 0.0
Identities = 618/693 (89%), Gaps = 13/693 (2%)
Strand=Plus/Plus
Query 81 GTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAAGCCAGGTATTGAGTGGTCGTTGCGC 140
||||||| || ||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 33 GTCAATAAGAGCGGCGGATTGGGAATGGGATGAAAGCAAGGTATTGAGTGCTCGTTGCGG 92
Query 141 AGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCTTTTCTTGTGGA 200
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 93 AGAGACCGATGGGACGTGGTTAGGTATTTCTTTTCGAGGCCGAGTCGCTTTTCTTGTGGA 152
Query 201 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGTGTCGTACTCTTGATTTCTT 260
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 153 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGCGTCGTACTCTTGAGTTCTT 212
Query 261 AAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCTTTAGATTC-CGGACGTA 319
| |||||||| ||||||||||||||||||| | ||||| ||| |||| | ||||||||
Sbjct 213 AGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTAGCTGCAGAT-CGCGGACGTA 271
Query 320 ACACGGGGATAGCCTATCATCTAATTGTGGCCGACATAGTTTCAAACTCAATGTTTTATA 379
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 272 ACACGCAGATAGCCTATCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGTTATATA 331
Query 380 TCTACAAACCGTCTTTGTCTGAAGATGGCA-TGGTCTATACAGA-GCCTGTTGGTCCTGG 437
||| ||||| |||||| ||||||||||||| || || ||| | | |||||||||||||||
Sbjct 332 TCTCCAAACAGTCTTTCTCTGAAGATGGCACTG-TCCATATA-ATGCCTGTTGGTCCTGG 389
Query 438 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGACTTACGTCT 497
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 390 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGAATTACGTCT 449
Query 498 GAAAC-GCTATTTTTCTGAGCGGATTAACAGAGAACTACCAGAACCAATCTCGGGGC-TT 555
||||| | | |||||||||| ||||||||||| |||||||||| | ||||| ||| | ||
Sbjct 450 GAAACAG-TCTTTTTCTGAGAGGATTAACAGAAAACTACCAGAGCAAATCT-GGGACCTT 507
Query 556 GCTGAGGAGGTTATGTATGATACAGTCGAAGCTATAAACGGAGACCCACTGAGCTCTATC 615
||||| ||| ||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 508 GCTGAAGAGATTATGTATGAT-C-G-CGAAGCTATAATCGGAGACCCACTGAGCTCTATT 564
Query 616 TTTGTCGTCGACACTTTGATTGAAAACGAACACTATGGAACAAGATGTACGACAGCATTG 675
||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 565 TTTGTCGACGACACTATGATTGAACACGAATACTATGGAACAAGAAATACGACAGCATTG 624
Query 676 GTTGTGAGACGCACCATGCAAGTGAGGTTCTTTGAGAGGTACAGGGCGAGATTTAATGAT 735
|||||||||| ||||| | ||||| |||| ||||||| ||||||||| ||||||||
Sbjct 625 GTTGTGAGACCCACCAAGGAAGTGTCGTTCGCTGAGAGGAACAGGGCGATATTTAATGCC 684
Query 736 GACTGGAACGTGCACGACTTCCGGTTCACCATC 768
|| |||| | |||||| |||| |||||||||
Sbjct 685 GATTGGACCATGCACGCCTTCTTTTTCACCATC 717
> Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1
Length=801
Score = 665 bits (360), Expect = 0.0
Identities = 609/722 (84%), Gaps = 46/722 (6%)
Strand=Plus/Plus
Query 79 AGGTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAA---G------CCAGGTATTGAGT 129
||||||||| ||||||||||||||||| ||||||||| | |||| ||||||||
Sbjct 88 AGGTCAATAAGAAAGGCGGCTTGGGAACGGGATGAAACTGGAACTTACCAGATATTGAGT 147
Query 130 GGTCGTTGCGCAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 189
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GGTCGTTGCGAAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 207
Query 190 TTTCTTGTGGAGGCA-GGGCCC--GTTAACAGA-GACAGAATCATCGGCGCCGAGTGTCG 245
||||||||||| ||| || ||| || || | |||||| ||||||| |||||| ||||
Sbjct 208 TTTCTTGTGGATGCATGGCCCCTACTTGTCA-ATGACAGATTCATCGGTGCCGAGCGTCG 266
Query 246 TACTCTTGATTTCTTAAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCT-- 303
||||||||| |||||| |||||||| ||||||||||||||||||| | |||||||||
Sbjct 267 TACTCTTGAGTTCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTGGCTGC 326
Query 304 --TTA---G--ATTCCGGACGTAACACGGGGATAGCCTATCATCTAATTGTGGCCGACAT 356
|| | || ||| |||||||||| |||| ||||||| |||||||||||||||||
Sbjct 327 AGATACCGGACATACCGCACGTAACACGCAGATATCCTATCAGCTAATTGTGGCCGACAT 386
Query 357 AGTTTCAAACTCAATGTTTTATATCTACAAACCGTCTTTGTCTGAAGATGGCATGGTCTA 416
|| ||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||| |
Sbjct 387 AGCTTCAAACTCAATGTTTTATATCTCCAAACCATCTTTGTCTGAAAATGGCATTGTCCA 446
Query 417 TACAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGT 476
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 447 TATAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGATGGACTCGATTCCGAAGA 506
Query 477 TGGACACAGGGACTTACGTCTGAAACGCTATTTTTCTGAGCGGATTAACAGAGAACTACC 536
||||| ||||||||||| ||||||| || |||| |||| |||||||||||||| ||
Sbjct 507 TGGACGCAGGGACTTACATCTGAAAAACTCTTTTGGTGAGATGATTAACAGAGAACGACT 566
Query 537 AGAACCAATCTCGGG-GCTTGCTGAGGAGGTTATGTATGATACAGTC-GAAGCT-AT-AA 592
| |||||| ||| ||||||| |||| ||||||||||| ||||| || ||| | ||
Sbjct 567 ACCACCAATAA-GGGAGCTTGCT-AGGA--TTATGTATGATCCAGTCAGA-GCTTACGAA 621
Query 593 ACGGAGACCCACTGA-GCTCTATCTTTGTCGTCGACACTTTG-ATTGAAAACGAACACTA 650
| | || |||||||| | ||||| ||||||||||||| | | |||| | |||||||||
Sbjct 622 A-G-AGTCCCACTGATG-TCTATTTTTGTCGTCGACA-TGAGGATTGGATCCGAACACTA 677
Query 651 TGGAACAAGATGTACGACAGCATTGGTTGTGAGACGCACCATGCAA-GTGAGGTTCTTTG 709
|||||||||| |||||||||||||||| |||| |||||||| | | |||| ||||||||
Sbjct 678 TGGAACAAGAAGTACGACAGCATTGGTGGTGAAACGCACCAA-CGACGTGATGTTCTTTG 736
Query 710 AGAGGTACAGGGCGAGATTTAATGATGACTGG-AACG-TGCACGACTTC-CGGTTCACCA 766
|||||||||||| || |||||||||| ||||| || | | ||||||||| || |||||||
Sbjct 737 AGAGGTACAGGGAGAAATTTAATGATAACTGGGAA-GAT-CACGACTTCGCG-TTCACCA 793
Query 767 TC 768
||
Sbjct 794 TC 795
Score = 108 bits (58), Expect = 9e-23
Identities = 63/65 (97%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 21 ATGGGGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 80
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 60
Query 81 GTCAA 85
| |||
Sbjct 61 G-CAA 64
> Ahg911862 jgi|Araly1|911862|Al_scaffold_0001_2116
Length=861
Score = 106 bits (57), Expect = 3e-22
Identities = 77/86 (90%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1 ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAAC-ATACTGACGCTGCTGCAGAA 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1 ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAACCA-ACTGACGCTGCTGCAAAA 59
Query 60 CAGAGAGAACTGGCAATCAAGGTCAA 85
|||||| || ||| | ||| || |||
Sbjct 60 CAGAGACAATTGGGATTCATGG-CAA 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5