BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20730.1 Length=946 Score E Sequences producing significant alignments: (Bits) Value Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120 852 0.0 Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1 665 0.0 Ahg911862 jgi|Araly1|911862|Al_scaffold_0001_2116 106 3e-22 > Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120 Length=723 Score = 852 bits (461), Expect = 0.0 Identities = 618/693 (89%), Gaps = 13/693 (2%) Strand=Plus/Plus Query 81 GTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAAGCCAGGTATTGAGTGGTCGTTGCGC 140 ||||||| || ||||| ||||||||||||||||||| |||||||||||| |||||||| Sbjct 33 GTCAATAAGAGCGGCGGATTGGGAATGGGATGAAAGCAAGGTATTGAGTGCTCGTTGCGG 92 Query 141 AGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCTTTTCTTGTGGA 200 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 93 AGAGACCGATGGGACGTGGTTAGGTATTTCTTTTCGAGGCCGAGTCGCTTTTCTTGTGGA 152 Query 201 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGTGTCGTACTCTTGATTTCTT 260 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 153 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGCGTCGTACTCTTGAGTTCTT 212 Query 261 AAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCTTTAGATTC-CGGACGTA 319 | |||||||| ||||||||||||||||||| | ||||| ||| |||| | |||||||| Sbjct 213 AGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTAGCTGCAGAT-CGCGGACGTA 271 Query 320 ACACGGGGATAGCCTATCATCTAATTGTGGCCGACATAGTTTCAAACTCAATGTTTTATA 379 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 272 ACACGCAGATAGCCTATCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGTTATATA 331 Query 380 TCTACAAACCGTCTTTGTCTGAAGATGGCA-TGGTCTATACAGA-GCCTGTTGGTCCTGG 437 ||| ||||| |||||| ||||||||||||| || || ||| | | ||||||||||||||| Sbjct 332 TCTCCAAACAGTCTTTCTCTGAAGATGGCACTG-TCCATATA-ATGCCTGTTGGTCCTGG 389 Query 438 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGACTTACGTCT 497 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 390 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGAATTACGTCT 449 Query 498 GAAAC-GCTATTTTTCTGAGCGGATTAACAGAGAACTACCAGAACCAATCTCGGGGC-TT 555 ||||| | | |||||||||| ||||||||||| |||||||||| | ||||| ||| | || Sbjct 450 GAAACAG-TCTTTTTCTGAGAGGATTAACAGAAAACTACCAGAGCAAATCT-GGGACCTT 507 Query 556 GCTGAGGAGGTTATGTATGATACAGTCGAAGCTATAAACGGAGACCCACTGAGCTCTATC 615 ||||| ||| ||||||||||| | | ||||||||||| ||||||||||||||||||||| Sbjct 508 GCTGAAGAGATTATGTATGAT-C-G-CGAAGCTATAATCGGAGACCCACTGAGCTCTATT 564 Query 616 TTTGTCGTCGACACTTTGATTGAAAACGAACACTATGGAACAAGATGTACGACAGCATTG 675 ||||||| ||||||| |||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 565 TTTGTCGACGACACTATGATTGAACACGAATACTATGGAACAAGAAATACGACAGCATTG 624 Query 676 GTTGTGAGACGCACCATGCAAGTGAGGTTCTTTGAGAGGTACAGGGCGAGATTTAATGAT 735 |||||||||| ||||| | ||||| |||| ||||||| ||||||||| |||||||| Sbjct 625 GTTGTGAGACCCACCAAGGAAGTGTCGTTCGCTGAGAGGAACAGGGCGATATTTAATGCC 684 Query 736 GACTGGAACGTGCACGACTTCCGGTTCACCATC 768 || |||| | |||||| |||| ||||||||| Sbjct 685 GATTGGACCATGCACGCCTTCTTTTTCACCATC 717 > Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1 Length=801 Score = 665 bits (360), Expect = 0.0 Identities = 609/722 (84%), Gaps = 46/722 (6%) Strand=Plus/Plus Query 79 AGGTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAA---G------CCAGGTATTGAGT 129 ||||||||| ||||||||||||||||| ||||||||| | |||| |||||||| Sbjct 88 AGGTCAATAAGAAAGGCGGCTTGGGAACGGGATGAAACTGGAACTTACCAGATATTGAGT 147 Query 130 GGTCGTTGCGCAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 189 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 GGTCGTTGCGAAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 207 Query 190 TTTCTTGTGGAGGCA-GGGCCC--GTTAACAGA-GACAGAATCATCGGCGCCGAGTGTCG 245 ||||||||||| ||| || ||| || || | |||||| ||||||| |||||| |||| Sbjct 208 TTTCTTGTGGATGCATGGCCCCTACTTGTCA-ATGACAGATTCATCGGTGCCGAGCGTCG 266 Query 246 TACTCTTGATTTCTTAAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCT-- 303 ||||||||| |||||| |||||||| ||||||||||||||||||| | ||||||||| Sbjct 267 TACTCTTGAGTTCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTGGCTGC 326 Query 304 --TTA---G--ATTCCGGACGTAACACGGGGATAGCCTATCATCTAATTGTGGCCGACAT 356 || | || ||| |||||||||| |||| ||||||| ||||||||||||||||| Sbjct 327 AGATACCGGACATACCGCACGTAACACGCAGATATCCTATCAGCTAATTGTGGCCGACAT 386 Query 357 AGTTTCAAACTCAATGTTTTATATCTACAAACCGTCTTTGTCTGAAGATGGCATGGTCTA 416 || ||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||| | Sbjct 387 AGCTTCAAACTCAATGTTTTATATCTCCAAACCATCTTTGTCTGAAAATGGCATTGTCCA 446 Query 417 TACAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGT 476 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 447 TATAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGATGGACTCGATTCCGAAGA 506 Query 477 TGGACACAGGGACTTACGTCTGAAACGCTATTTTTCTGAGCGGATTAACAGAGAACTACC 536 ||||| ||||||||||| ||||||| || |||| |||| |||||||||||||| || Sbjct 507 TGGACGCAGGGACTTACATCTGAAAAACTCTTTTGGTGAGATGATTAACAGAGAACGACT 566 Query 537 AGAACCAATCTCGGG-GCTTGCTGAGGAGGTTATGTATGATACAGTC-GAAGCT-AT-AA 592 | |||||| ||| ||||||| |||| ||||||||||| ||||| || ||| | || Sbjct 567 ACCACCAATAA-GGGAGCTTGCT-AGGA--TTATGTATGATCCAGTCAGA-GCTTACGAA 621 Query 593 ACGGAGACCCACTGA-GCTCTATCTTTGTCGTCGACACTTTG-ATTGAAAACGAACACTA 650 | | || |||||||| | ||||| ||||||||||||| | | |||| | ||||||||| Sbjct 622 A-G-AGTCCCACTGATG-TCTATTTTTGTCGTCGACA-TGAGGATTGGATCCGAACACTA 677 Query 651 TGGAACAAGATGTACGACAGCATTGGTTGTGAGACGCACCATGCAA-GTGAGGTTCTTTG 709 |||||||||| |||||||||||||||| |||| |||||||| | | |||| |||||||| Sbjct 678 TGGAACAAGAAGTACGACAGCATTGGTGGTGAAACGCACCAA-CGACGTGATGTTCTTTG 736 Query 710 AGAGGTACAGGGCGAGATTTAATGATGACTGG-AACG-TGCACGACTTC-CGGTTCACCA 766 |||||||||||| || |||||||||| ||||| || | | ||||||||| || ||||||| Sbjct 737 AGAGGTACAGGGAGAAATTTAATGATAACTGGGAA-GAT-CACGACTTCGCG-TTCACCA 793 Query 767 TC 768 || Sbjct 794 TC 795 Score = 108 bits (58), Expect = 9e-23 Identities = 63/65 (97%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 21 ATGGGGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 80 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 60 Query 81 GTCAA 85 | ||| Sbjct 61 G-CAA 64 > Ahg911862 jgi|Araly1|911862|Al_scaffold_0001_2116 Length=861 Score = 106 bits (57), Expect = 3e-22 Identities = 77/86 (90%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 1 ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAAC-ATACTGACGCTGCTGCAGAA 59 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || Sbjct 1 ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAACCA-ACTGACGCTGCTGCAAAA 59 Query 60 CAGAGAGAACTGGCAATCAAGGTCAA 85 |||||| || ||| | ||| || ||| Sbjct 60 CAGAGACAATTGGGATTCATGG-CAA 84 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35111206557 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5