BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20735.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911865 jgi|Araly1|911865|Al_scaffold_0001_2119 1421 0.0
> Ahg911865 jgi|Araly1|911865|Al_scaffold_0001_2119
Length=1182
Score = 1421 bits (769), Expect = 0.0
Identities = 1069/1208 (88%), Gaps = 43/1208 (4%)
Strand=Plus/Plus
Query 1 ATGAATGACTTACCCTTTCATCTTCTTGACAACATTCTCTTCAGATTGGACCCCAAATCT 60
||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1 ATGAATGACCTACCCTTTCATCTTCTCGACCAGATTCTCTTCAGATTGGACCCCAAATCT 60
Query 61 CTGGGGATAATGCGATGCACTAATAGATCTATCAATTCGCATATATCCAACGATCCGAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CTGGGGATAATGCGATGCACTAATAGATCTATCAATTCGCATATATCCGACGATCCGAAT 120
Query 121 TTTGTAAGTGGATACTCTTCCGAATATTCTTCTCGGGTTGGCTCCAGTCTTT-TTCACGT 179
||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 121 TTTGTAACTGGATACTCTTCCGAATATTCTTCTCGGGTTGGCTCCAGT-TTTATTCACCT 179
Query 180 TGGGATCAGCT-TGGGCGACAATTT-CATCATCTGCCACCATTTTTCTTATTCATGCGAT 237
|||| | ||| | |||||| ||| |||| ||||||||||||| | | ||||||||||
Sbjct 180 TGGG-T--GCTAT-GGCGAC-TTTTACATCTTCTGCCACCATTTGGCCTCTTCATGCGAT 234
Query 238 TCTACT-TCAGT-GAAAGAAAGATCAGTGTTGGA-ATTTCTGTCT-TGTTACATTTTAGG 293
|||| | ||||| || | ||||| || |||| || || || | | |||||| |||| ||
Sbjct 235 TCTA-TGTCAGTGGACA-AAAGAGCAATGTT-GACATATCACT-TGTGTTACTTTTTCGG 290
Query 294 CTCATGCTCCGGCCTTCTCTTACTATTCATCGATGGCCTCTTCCTCGCAAATCCCCTCAC 353
|||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||
Sbjct 291 CTCATGCTCCGGCCTTCTCTTACTATACATGGATGGCCTCTTCGTCGCAAATCCCCTCAC 350
Query 354 AAAGAGGTTTCGACCTTTGAATCACTCTGGCTCAAAGCTTCTGTCTCCCATATTTGGTCG 413
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 351 AAAGAGGTTTCGACGTTTGAATCACTCTGGCTCAAAGCTTCTGTCTCACGTATTTGGT-G 409
Query 414 -TAATAGTCAAATCACCTCACGTGATGACGGTATAGAAGATTACAAAGCTCGTA-AGGAG 471
|| | || | ||| | |||||| | || |||| |||||||||||| | |||
Sbjct 410 CTACT-GT----T--CCT--TTTTATGACGCTTTACAAGAGAACAAAGCTCGTATA-GAG 459
Query 472 AGAAGGATGC-GTGTTGGTTTCGTGGTAAGTCCCACCAAAGGTTTCAAGATCGTATGCAT 530
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AGAAAGAT-CTGTGTTGGTTTCGTGGTAAGTCCCACCAAAGGTTTCAAGATCGTATGCAT 518
Query 531 ACTCGAGATGGAAACGGTGTACGGGTTCGAGATCAGTGACGGAGATTCATGGAGGTTATC 590
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 519 ACTCGAGATGGAAACGGTGTACGGATTCGAGATCAGTGACGGAGATTCATGGAGGTTATC 578
Query 591 GGAAACAACCATCACCACTAGCTCAAAAAGCCTACTCACGACATGGATGAAACCTGTTTA 650
||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 579 GGAGACAACCATCACCACTAGCTCAAAAAGCGAACTCGCGACATGGATAAAACCTGTTTA 638
Query 651 CTTGGACGGCACTCTTCACTGGCTGAGAAACGACGGGAGTATCATAGCTTTCGATCCTGA 710
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 639 CTTGGACGGCACTCTTCACTGGTTGAGAAACGACGGGAGTATCATAGCTTTCAATCCTGA 698
Query 711 GACAGAGCAGGCACGCTTCGTTCCTTCCGTATTCCATCGTGGAGGACCGGGTACGAAGCT 770
||||||||| ||| |||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 699 GACAGAGCAAGCAAGCTTCGTTCCTTCCATATTCCATCGTGGAGAACCGGATACGAAGCT 758
Query 771 GATTTTCACGGAAGATAGTAAGAAGAATCGCCTGACCTTAATATCGGGGACGAAGGAAAC 830
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 759 TCTTTTCGCGGAAGATAGTAAGAAGAATTGCCTGATCTTAGTATCGGGGACGAAGGAAAC 818
Query 831 AATTTCAGTTTACACACTAGTCAACAATTCCAAATGGGACCTCACCAGGCAGATCGCAAA 890
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 819 AATCTCAGTTTACACACTAGTCAAGAATTCCAAATGGGACCTCACCAGGCAGATCGCGAA 878
Query 891 CGTATATGTGAACGAAATAGATCTTCTATGCTGGCAGTTGATTGTGTGCGACGGCAAGTG 950
||||||| |||||||| ||| ||| || |||||| ||| || ||||||||||||||||
Sbjct 879 CGTATATATGAACGAAGGAGAGCTTTTACACTGGCATTTGGTTATGTGCGACGGCAAGTG 938
Query 951 TCTTGTAGTT-GTG-GA-GAACACTCAT-AGTGGCTACGGCGTGGTTCATGTGTACGACT 1006
|||||| || | | || ||| | | || | | | || || |||||||||||||||||||
Sbjct 939 TCTTGTGGTGAGGGAGATGAAGAAT-ATTACTTGTTATGGTGTGGTTCATGTGTACGACT 997
Query 1007 TGGAAGCTAACAGTTGGAAAGTTTCAGGGTCGAATGAAT-TTATGGGCA-TGAGTATCGG 1064
|||||||||||| |||| |||||||||||||| || |||||| || | || | |
Sbjct 998 TGGAAGCTAACACTTGGGGAGTTTCAGGGTCGACCCAAGCTTATGG-CAGT-AGGACCAT 1055
Query 1065 AGACTTCTATAAGTTTACACCCTCCTTGGTCTTTGTCGAGGGAGATGAGCAGGAGATTAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGACTTCTATAAGTTTACACCCTCCTTGGTCTTTGTCGAGGGAGATGAGCAGGAGATTAT 1115
Query 1125 AGCTTCTACT-GAAAAACGCATAATCTCTGCTCTCACTGCGGTGATGGGACTCACTGATA 1183
|||||||||| | ||| | |||||||||| |||||||||||| |||||||||| |||||
Sbjct 1116 AGCTTCTACTAGCAAA-CTCATAATCTCTAATCTCACTGCGGTTATGGGACTCATTGATA 1174
Query 1184 GAACCTAA 1191
||||||||
Sbjct 1175 GAACCTAA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5