BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20740.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1 854 0.0
Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120 645 0.0
Ahg912936 jgi|Araly1|912936|Al_scaffold_0001_3190 110 2e-23
Ahg911904 jgi|Araly1|911904|Al_scaffold_0001_2158 110 2e-23
> Ahg472310 jgi|Araly1|472310|fgenesh2_kg.1__2264__AT1G20740.1
Length=801
Score = 854 bits (462), Expect = 0.0
Identities = 709/822 (86%), Gaps = 42/822 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGGGAGAAAACACACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATTAAG 60
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 60
Query 61 GCAAACATTGTTGATGAACCTTTTTCTGTATCGGCGATTGATAGGTCAATAAGAAA---G 117
|| | | ||| | || |||| | ||| || || ||||||||||||||| |
Sbjct 61 GC--A-A--GTT--T-AA---AATTCT-T-TCGACG--TGTTAGGTCAATAAGAAAGGCG 105
Query 118 GC---GGAATGGGTTAAAACTGAAACTGACCAGATATTAAGTGGTCGTTGCCCAGAGACC 174
|| |||| ||| | |||||| |||| |||||||||| |||||||||||| |||||||
Sbjct 106 GCTTGGGAACGGGATGAAACTGGAACTTACCAGATATTGAGTGGTCGTTGCGAAGAGACC 165
Query 175 GATGGGACGTGGTTAGGTATTTCTACTCGAGGCCGAGTCGCTTTTCTTGTGGAGGCA-GG 233
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 166 GATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCTTTTCTTGTGGATGCATGG 225
Query 234 -GACTA-TTAACAGA-GACAGATTCAACGGCGCCGAGAGTCGTACTCTTGAGTTCTTAGA 290
||| || || | |||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 226 CCCCTACTTGTCA-ATGACAGATTCATCGGTGCCGAGCGTCGTACTCTTGAGTTCTTAGA 284
Query 291 GAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATCGGCTGCAGATTA-CATACGTA--A 347
||||||||||||||||||||||||||||||||||| ||||||||| || | || ||
Sbjct 285 GAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTGGCTGCAGA-TACCGGACATACCG 343
Query 348 CAAG-AACA--CAG-CCGCCTTTCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGC 403
|| | |||| ||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct 344 CACGTAACACGCAGATATCCTATCAGCTAATTGTGGCCGACATAGCTTCAAACTCAATGT 403
Query 404 TTTATATCTCCAAACC-GCGTTTCTCTGACTATGGCATTGTCTATACAGAGCCTGTTGGT 462
|||||||||||||||| | ||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 404 TTTATATCTCCAAACCATC-TTTGTCTGAAAATGGCATTGTCCATATAGAGCCTGTTGGT 462
Query 463 CCTGGTGTTCACACACTATCTTCAGCTGGACTCGATTCCGACGTTGGATACAGGGACTTA 522
||||||||||| || |||||||||| ||||||||||||||| | |||| ||||||||||
Sbjct 463 CCTGGTGTTCATACCCTATCTTCAGATGGACTCGATTCCGAAGATGGACGCAGGGACTTA 522
Query 523 CGTATGAGACACTCTTTTTGTGAGATGATTAACAGAGAACGACTACCACCAATAAGGGA- 581
| | ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CATCTGAAAAACTCTTTTGGTGAGATGATTAACAGAGAACGACTACCACCAATAAGGGAG 582
Query 582 CATTGCTGAG-ATTATGTATGATCCAGTCAAAGCTTACGAAAGCGTGCTACTGA-GCTCT 639
| ||||| || ||||||||||||||||||| |||||||||||| || | ||||| | |||
Sbjct 583 C-TTGCT-AGGATTATGTATGATCCAGTCAGAGCTTACGAAAGAGTCCCACTGATG-TCT 639
Query 640 AtttttttCGTCGACATGAAGATTGGATACGAACACTATGGAACAAGAATTACGACAGCA 699
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 640 ATTTTTGTCGTCGACATGAGGATTGGATCCGAACACTATGGAACAAGAAGTACGACAGCA 699
Query 700 TTGGTTGTGAAACGCACCAAGGAAGTGTTGTTCTTTGAGAGGTACAGGGAGATATTTAAT 759
||||| |||||||||||||| || ||| |||||||||||||||||||||||| |||||||
Sbjct 700 TTGGTGGTGAAACGCACCAACGACGTGATGTTCTTTGAGAGGTACAGGGAGAAATTTAAT 759
Query 760 GATGATTGGGACGACCACGACTTCGCGTTCACCATCATCTAG 801
||| | ||||| || |||||||||||||||||||||||||||
Sbjct 760 GATAACTGGGAAGATCACGACTTCGCGTTCACCATCATCTAG 801
> Ahg911866 jgi|Araly1|911866|Al_scaffold_0001_2120
Length=723
Score = 645 bits (349), Expect = 0.0
Identities = 598/713 (84%), Gaps = 38/713 (5%)
Strand=Plus/Plus
Query 105 GTCAATAAGAAAGGCGGAATGGG-TTAAAACTGAAACTGACCAGATATTAAGTGGTCGTT 163
|||||||||| |||||| |||| | | ||||| | | || |||| |||| |||||
Sbjct 33 GTCAATAAGAGCGGCGGATTGGGAATGGGA-TGAAA--G-CAAGGTATTGAGTGCTCGTT 88
Query 164 GCCCAGAGACCGATGGGACGTGGTTAGGTATTTCTACTCGAGGCCGAGTCGCTTTTCTTG 223
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 89 GCGGAGAGACCGATGGGACGTGGTTAGGTATTTCTTTTCGAGGCCGAGTCGCTTTTCTTG 148
Query 224 TGGAGGCAGGGACTATTAACAGAGACAGATTCAACGGCGCCGAGAGTCGTACTCTTGAGT 283
||||||||||| | |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 149 TGGAGGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGCGTCGTACTCTTGAGT 208
Query 284 TCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATCGGCTGCAGATTACATAC 343
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 209 TCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTAGCTGCAGATCGCGGAC 268
Query 344 GTAACAAGAACACAGCCGCCTTTCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGC 403
|||||| | | | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 269 GTAACACGCAGATAGCC---TATCATCTAATTGTGGCCGACATAGCTTCAAACTCAATG- 324
Query 404 TT-TATATCTCCAAACCG-CGTTTCTCTGACTATGGCATTGTCTATACAGA-GCCTGTTG 460
|| ||||||||||||| | | ||||||||| |||||| |||| ||| | | ||||||||
Sbjct 325 TTATATATCTCCAAACAGTC-TTTCTCTGAAGATGGCACTGTCCATATA-ATGCCTGTTG 382
Query 461 GTCCTGGTGTTCACACACTATCTTCAGCTGGACTCGATTCCGACGTTGGATACAGGGACT 520
||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 383 GTCCTGGTGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGAAT 442
Query 521 TACGTATGAGACACTCTTTTTGTGAGATGATTAACAGAGAACGACTACCAC--CAA-TAA 577
||||| ||| ||| ||||||| ||||| |||||||||| || ||||||| ||| |
Sbjct 443 TACGTCTGAAACAGTCTTTTTCTGAGAGGATTAACAGA-AA--ACTACCAGAGCAAATCT 499
Query 578 GGGACATTGCTGA-GA--TTATGTATGATCCAGTCAAAGCT-TA--CGAA-AGCGTGCTA 630
||||| ||||||| || |||||||||||| | | ||||| || || | | | | |
Sbjct 500 GGGACCTTGCTGAAGAGATTATGTATGATC--G-CGAAGCTATAATCGGAGACC---C-A 552
Query 631 CTGAGCTCTAtttttttCGTCGACA-TGAAGATTGGATACGAACACTATGGAACAAGAAT 689
||||||||||||||| ||| ||||| | | ||||| | ||||| |||||||||||||||
Sbjct 553 CTGAGCTCTATTTTTGTCGACGACACT-ATGATTGAACACGAATACTATGGAACAAGAAA 611
Query 690 TACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGTTCTTTGAGAGGTACAGGGA 749
|||||||||||||||||||| || |||||||||||||| |||| ||||||| ||||||
Sbjct 612 TACGACAGCATTGGTTGTGAGACCCACCAAGGAAGTGTCGTTCGCTGAGAGGAACAGGGC 671
Query 750 GATATTTAATGATGATTGGGACGAC-CACGACTTCGCGTTCACCATCATCTAG 801
||||||||||| |||||| || | |||| |||| |||||||||||||||
Sbjct 672 GATATTTAATGCCGATTGG-ACCATGCACGCCTTCTTTTTCACCATCATCTAG 723
> Ahg912936 jgi|Araly1|912936|Al_scaffold_0001_3190
Length=570
Score = 110 bits (59), Expect = 2e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 671 AACACTATGGAACAAGAATTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGT 730
||| || |||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 443 AACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGATGC 502
Query 731 TCTTTGAGAGGTACAGGGAG 750
||||||||||||||| ||||
Sbjct 503 TCTTTGAGAGGTACATGGAG 522
> Ahg911904 jgi|Araly1|911904|Al_scaffold_0001_2158
Length=753
Score = 110 bits (59), Expect = 2e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 671 AACACTATGGAACAAGAATTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGT 730
||| || |||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 626 AACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGATGC 685
Query 731 TCTTTGAGAGGTACAGGGAG 750
||||||||||||||| ||||
Sbjct 686 TCTTTGAGAGGTACATGGAG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5