BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20750.1
Length=3435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472311 jgi|Araly1|472311|fgenesh2_kg.1__2265__AT1G20750.1 2200 0.0
Ahg921039 jgi|Araly1|921039|scaffold_102320.1 1613 0.0
Ahg911864 jgi|Araly1|911864|Al_scaffold_0001_2118 606 3e-172
> Ahg472311 jgi|Araly1|472311|fgenesh2_kg.1__2265__AT1G20750.1
Length=3417
Score = 2200 bits (1191), Expect = 0.0
Identities = 1452/1572 (92%), Gaps = 41/1572 (3%)
Strand=Plus/Plus
Query 706 CACAGTAATATGGAAGACATTGCTCGTGAAGCAGGAAGCATTAACTTGGAAGAAGACATT 765
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 812 CACA-TAATATGGAAGACATTGCTCGTGAAGCAGGAAGCATTAACATGGAAGAAGATATT 870
Query 766 ATTTTCAAATTGAAGAATGAACTAGAACAGATGAGTGAGGTTGAGCCAGAGATATATGAT 825
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 871 CTTTTCAAATTGAAGAATGAACTAGAACAGGTGAGTGAGAATGAGCCAGAGATATATGAA 930
Query 826 TCCTTGTATGA-AGTAGTAGAGGGATTGATAAGCTGGATTGGAAGAAAGAAGGATTCACT 884
||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 931 TCCTTGTAT-ATAGTAGTAGAGGGATTGATAAGCTGGATTGGGAGAAAAAAGGATTCACT 989
Query 885 CGCAAAACGTGATGTTGACCACTATTTCTCTAACTGGACTGGAGATAGAGCTTTGAAAGA 944
| |||||||||| |||| |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 990 AGTAAAACGTGATTTTGAGCACTATTTCTCTAATTGGACTGGAGACAGAGCTTTAAAAGA 1049
Query 945 GCTAAAGGAATTCAATATCACTCGAGAAAACTTCCCAAACTTAAAGGCATGTTTTAACCA 1004
| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1050 GTTAAAGGAATTCAATATCACTCCTGAAAACTTCCCAAACTTAGAGGCATGTTTTAACCA 1109
Query 1005 AGCGATCACAAAATCAGAAGCAGCAGAAATTGACCCGGATAAGCCTTATTTGAGTGGGAT 1064
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1110 AGCGATCACAAAATCAGAGGCATCAGAAATGGACCCGGATAAGCCTTATTTGAGTGGGAT 1169
Query 1065 ATCTGTCTCCACACTAGAAGAGTTGTTTGCTACACTTACATACTTCTTTTCAAGAAATGG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ATCTGTCTCCACACTAGAAGAGTTGTTTGCTACACTTACATACTTCTTTTCAAGAAATGG 1229
Query 1125 AAGTCACGTCCTAGATTATGAAATGGGTTTACAACGTTCTGCTAAGAGAGG-A---GA-- 1178
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1230 AAGTCACGTCCTAGATTATGAAATGGGTTTACAACGGTCTGCTAAGAGAGGTACAAGAGA 1289
Query 1179 TAATGGGTGGACGAATACTTTCAGTTTATGGTGCATGAATCCGTCTGTTGTTTTCAAAGA 1238
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1290 TAATGGGTGGACGCATACTTTCAGTTTGTGGTGCATGAATCCGTCTGTTGTTTTCAAAGA 1349
Query 1239 CTTAGCTGATCTGTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTC 1298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CTTAGCTGATCTTTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTC 1409
Query 1299 TTTCTCATCTGAACTTGGGATGCAGTTTGGTACTTGTTTAGAGGCTCCACATGTGATTGA 1358
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1410 TTTCTCATCTGAACTTGGGATGCAATTTGGCACTTGTTTAGAGGCTCCACATGTGATTGA 1469
Query 1359 TCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCACTGTTCCTGGTAACTATCCTCTAAA 1418
||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||
Sbjct 1470 TCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCAGTGGTCCTGGTAATTTTCCTCTAAA 1529
Query 1419 CGCAAGTTATAGAACAGCTGAGGCATATGCATTCCAGGACGCTCTAGGGAAATCATTGGA 1478
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1530 TGCAAGTTATAAAACAGCTGATGCATATGCATTCCAGGATGCTCTAGGGAAATCGTTGGA 1589
Query 1479 AGAAATCTGCACTATTGTACCAGGTGGCTCTCTTGTATTCTTTCCAAGCTATAAGTTGAT 1538
||| || |||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1590 AGAGATTTGCAGTATTGTACCAGGAGGCTCTCTGGTATTCTTTCCAAGCTATAAGTTGAT 1649
Query 1539 GGAAAAACTTTGCACACGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGAAAAC 1598
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GGAAAAACTCTGCACGCGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGAAAAG 1709
Query 1599 AGACCTTTTTATCGAACCAAGAGGAGGATCCAAGGACGATTTCGAAACTGTTCTCAAGGA 1658
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1710 GGACTTTTTTATCGAACCAAGAGGAGGAGCCAAGGACGATTTCGAAACTGTTCTGAAGGA 1769
Query 1659 ATACTATGATTCGATAAGCGGAAAGAACAGATTGATTGGAAGAAATAGCAGCGTTAAGAA 1718
||| |||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||
Sbjct 1770 ATATTATGATTCGATAAGCGGAAATAACAGATCGAATGGAAGAAATAGCAGAGTTAAGAA 1829
Query 1719 AGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCCAAGAGAGGATCTGCATTTCTTGC 1778
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1830 AGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCTAAGAGAGGATCTGCATTTCTTGC 1889
Query 1779 AGTATGTAGAGGAAAGGTTTCAGAAGGGATGGATTTTTCTGATGACAACGCCAGGGCAGT 1838
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1890 AGTATGTAGAGGAAAGGTTTCAGAAGGGCTTGATTTTTCTGATGACAATGCCAGGGCAGT 1949
Query 1839 GATAATTGTTGGCATTCCACTTCCAAACTTGGGCGATATTCTAGTCGAGCTAAAGAGAAA 1898
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1950 GATAATTGTTGGCATTCCATTTCCAAACTTGGGCGATATTCTAGTCGAACTAAAGAGGAA 2009
Query 1899 ATATAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTGGTATTGCCA 1958
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2010 ATATAATGATACCAACAAATCATCTAAAAAACTTCTTGGAGGGAGTGAGTGGTATTGCCA 2069
Query 1959 ACAGGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAGGTTTGATTA 2018
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2070 ACAGGCGTACCGTGCTTTAAATCAAGCAGCAGGGCGATGTATCCGGCATAGGTTTGATTA 2129
Query 2019 TGGTGCCATCATATTCTTAGTTAT--T-G-T---AG-CT--CT-GA---GGT-TACC-GA 2062
|||||||||||||||||| ||||| | | | || || || | ||| | || ||
Sbjct 2130 TGGTGCCATCATATTCTTGGTTATGATAGATTTGAGGCTGTCTTGTTTTGGTGTCCCAGA 2189
Query 2063 ----C-A-ACC-A-A-----GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCA-TCTAT 2108
| | ||| | | |||||||||| ||||||||||||||||||||||| |||||
Sbjct 2190 TGAGCGATACCGACAACCAAGGAACAGAGCTTCTATTTCAAAGTGGCTAAGGCAGTCTAT 2249
Query 2109 CAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGACTAAGATATTTTTTCAGCAGTGT 2168
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2250 CAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGATTAAGATATTTTTTCAACAGTGT 2309
Query 2169 CAAGGAGAGAGTTGACAGCAAGATGTTAGAGTCTCATGAGCAGAACTTGT-CCTCTGAAA 2227
|||||||| ||||||||| ||||| |||||||| ||||||||||| |||| || || |||
Sbjct 2310 CAAGGAGACAGTTGACAGTAAGATATTAGAGTCCCATGAGCAGAATTTGTTCC-CTAAAA 2368
Query 2228 ACCAAAGAAATG 2239
||||||| ||||
Sbjct 2369 ACCAAAGCAATG 2380
Score = 1184 bits (641), Expect = 0.0
Identities = 767/827 (93%), Gaps = 12/827 (1%)
Strand=Plus/Plus
Query 2466 TGGTATTGCAACAGCCAGACCATGTTCTAGCTCGAAGTATGAAAGCTCTAGCCTAGAAAC 2525
||||||| || ||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2403 TGGTATTTCAGCAGCCAGTCCATGTTCTAGCTCAAAGAATGAAAGCTCTAGCCTAGAAAC 2462
Query 2526 AGGTCTGAGATCTCTGAAGTCTCCTGATCAATTCTTAAAACGGCATGTATCTAATGCAAA 2585
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2463 AGGTCTGAGATCTCTGAGGTCTCCTGATCAATTCTTAAAACGGCATGTATCTACTTCAAA 2522
Query 2586 TTTCAGAAGATCTCCTCTTGGAGCTGAATCGTC-----T-GTAACTCCTGAGAGATATTC 2639
||| ||||| |||||||||| ||||| ||||| | |||||||| |||||||||||
Sbjct 2523 CTTCGGAAGACCTCCTCTTGGTGCTGAGTCGTCTGTAATAGTAACTCCGGAGAGATATTC 2582
Query 2640 CATTGGTGATATGCGTAATAT-GACTCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTA 2698
||||||||||| |||| | | || |||||||||||||||||| ||||||||||||||||
Sbjct 2583 CATTGGTGATACCCGTAGT-TCGATTCTAGAAGCAGAGTCACCGTTGAACATGAGTGTTA 2641
Query 2699 ATTCACATGTTTTGAAGAGAAGAAAGTTTACTACATCTCCAATCATCATTGACCTTGAAG 2758
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2642 ATTCCCATGCTTTGAAGAGAAGAAAGTTTACTACCTCTCCAATCATCATTGACCTTGAAG 2701
Query 2759 AAGAAAACAGTAA-TGCTCCTGACAATAGACCCGAGGATCACACGAGTTTCACTAGAAGA 2817
||||||||||||| | ||||||| | ||||||||||||||||||| ||||||| ||||||
Sbjct 2702 AAGAAAACAGTAACT-CTCCTGATACTAGACCCGAGGATCACACGCGTTTCACAAGAAGA 2760
Query 2818 ATTGAATTTGGGTTTCCAGAAGTGGATCAGAGAGTGATGAGGATATCATGTTCACTCTGC 2877
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2761 ATTGAATTTGGGTTTCCGGAAGTGGATCAGAGAGTGATGAGGATATCTTGTTCACTCTGC 2820
Query 2878 AGAAGTACATTAAGTCACCCTGAGAACAACTCATATCCCATATGCATGTTGACTTCGTCG 2937
|||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 2821 AGAAGTTCATTAGGTCACCCTGAGAACCACTCATATCCCAAATGCTTGTTGACTTCGTCG 2880
Query 2938 TCCAAAACCTATTTGCTGTCTCTTCTGAAAGAAACATCAGGAACAGGTTCTGCAGAAATG 2997
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2881 TCCAAAATGTATTTGCTGTCTCTTCTGAAAGAAACATCAGGAATTGGTTCTGCAGAAATG 2940
Query 2998 CCAACAAGTGTTTCAGTTATCATGACAGATTGCTCATTGGTTAATCAGAGACTCTGCACA 3057
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2941 CCAACAAGTGTTTCAGTTATCATGACAGATTGCTCATTGGTTAATCAGAGACTCTGCAGA 3000
Query 3058 AATTCTGAAAGCTCAAATGGTCAGGGTATTTGGTGCC-AGCAAGATGGATGTGTTTTCAA 3116
| |||||||| |||||| |||||||||||||||| || | ||||||||||||||||||||
Sbjct 3001 AGTTCTGAAATCTCAAAAGGTCAGGGTATTTGGT-CCGAACAAGATGGATGTGTTTTCAA 3059
Query 3117 AACTATCTTCTGCCCTTTCTGTAGTGTCCCAAACACCTGCCTTGGAATGCAAGTCATGGC 3176
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3060 AACTATCTTTTGCCCTTTCTGTAGTGTCCCAAACACCTGCCTTGGAGTGCAAGTCATGGC 3119
Query 3177 TACTGATTCATCAAACGTCCAGTTTATGAGCAAAATTTTGTTCTTTGCTGATCATCTAGA 3236
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3120 TACTGATTCATCAAACGCCCAGTTTATGAGCAAAATTTTATTCTTTGCTGATCATCTAGA 3179
Query 3237 AGTCACGAATGATGCTGCAAGCAAGGAAACAAGGTTAACGCACAAGT 3283
||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3180 AGTCACGAATGATGCTGCAAGCAAGCAAACAACGTTAACGCACAAGT 3226
Score = 1044 bits (565), Expect = 0.0
Identities = 646/686 (94%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCCACAAGAAGTAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCCGCAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 61 AAAAACCCTAAGAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTACCAACCC 120
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AAAAACCCTAAAAACGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
Query 121 TACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGAGA 180
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TATGGAACCCAGCTTGCTTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGCGA 180
Query 181 GATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAATCTCTGTCTTTG 240
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 GATGGTCACTCCCACGCTTTGCTCGAGTCTCCCACTGGAACAGGCAAATCTCTGTCTTTG 240
Query 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCTAATGGAAATTTG 300
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTATAAATCGCGGTTTCCGAATGGAAATTTG 300
Query 301 TCTCATTCGAAAACGCAGCCCTCAGATATTGCTGGATCTAGTAATGTGGAGCCACATGAA 360
||||||||| |||||| |||||||||| ||||| |||| ||||||| ||||||| ||||
Sbjct 301 ACTCATTCGAGAACGCATCCCTCAGATAATGCTGCATCTTGTAATGTTGAGCCACCTGAA 360
Query 361 CCT-CAGATTCCCACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCAT 419
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTGCA-ATTCCTACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCAT 419
Query 420 TCGTGAGTATCGAAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGTGAGTATCGGAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACG 479
Query 480 TTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGTAGACGAAAAATGTCGGTTGCT 539
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 480 TTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGTTGACGAAAAGTGTCGGTTGCT 539
Query 540 CCTAAAAGATAAGAAAAACATAAAATGTGCCGAGTTCAATGGCGTCGGTCGGATCTTAGC 599
|||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 540 CCTAAAAGATAAGAAAAACATAAAATGTGCTGAGTTCAAAGGCGTCGGTCAGATCTTAGC 599
Query 600 TTACCCATCACTTCAGCAGACCGGTCACAATGGGGTTCATGATATTGAAGACCTTGTAAA 659
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TTACCCATCACTTCAGCAAAACGGTCACAATGGGGTTCATGATATTGAAGATCTTGTAAA 659
Query 660 AATTGGAAAAACTGTTACAGGCCGTC 685
|||||||||||||||||||||| |||
Sbjct 660 AATTGGAAAAACTGTTACAGGCTGTC 685
> Ahg921039 jgi|Araly1|921039|scaffold_102320.1
Length=3556
Score = 1613 bits (873), Expect = 0.0
Identities = 1344/1562 (86%), Gaps = 69/1562 (4%)
Strand=Plus/Plus
Query 772 AAATTGA-AGAATGAACTAGAACAGATGAG-TGAGGTTG-AGCCAGA-GATATATGATTC 827
||||| | |||||||||||||||||||||| | || | ||||| | ||| ||| | |
Sbjct 963 AAATT-ACAGAATGAACTAGAACAGATGAGCT-TGG-CGCAGCCA-ATGATTTATCAACC 1018
Query 828 CTTGTATGAAGTAGTAGAGGGATTGATAAGCTGGATTGGAAGAAAGAAGGATTCACTCGC 887
||||| |||||||||||||||| | |||||||||||||||||||| ||||| ||| | ||
Sbjct 1019 CTTGTGTGAAGTAGTAGAGGGACTAATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGC 1078
Query 888 AAAACGTGATGTTGACCACTATTTCTCTAACTGGACTGGAGATAGAGCTTTGAA-AGAGC 946
|||||||||| || | || |||||||||| |||||||||||| | |||||| || |||||
Sbjct 1079 AAAACGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTT-AAGAGAGC 1137
Query 947 TAAAGGAATTC-AATATCACTCGAGAAAACTTCCCAAACTTAAAGGCATGTTTTAACCAA 1005
| ||||| || ||||||||||| ||| |||||||| |||| || ||| ||| || ||
Sbjct 1138 TTGAGGAA-TCTAATATCACTCGTGAATGCTTCCCAATCTTATTGGAATGCTTT-ACAAA 1195
Query 1006 -GCGATCACAAAATCAGAAGCA-GCAGAAATTGACCCGGATAAGCCTTATTTGAGTGGGA 1063
|| |||| || |||| ||| | |||||||| || | |||| || ||||||||| ||||
Sbjct 1196 GGCTATCAGAACATCA-AAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGA 1254
Query 1064 TATCTGTCTCCACACTAGAAGAGTTGTT-TGCTACACTTACATACTTCTTTTCAAGAAAT 1122
||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1255 TATCTGTCTTGACACTAGAAGAGTTGTTCT-CTTCACTTACATACTTCTTTTCAAGAAAT 1313
Query 1123 GGAAGTCACGTCCTAGATTATGAAATGGGTTTACAACGTTCTGCTAAGAGAGGAGA---T 1179
||||||||| || ||||||| || ||||||||||||| ||| |||| |||||||| |
Sbjct 1314 GGAAGTCACATCTTAGATTACCAACTGGGTTTACAACGCTCTACTAAAAGAGGAGATCCT 1373
Query 1180 AAT-G--GGTGGACGAATACTTTCAGTTTATGGTGCATGAATCCGT-CTGTTGTTTTCAA 1235
| | |||||| ||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 1374 TCTCGTACCTGGACGCATACTTTCAGTTTGTGGTGCATGAATCC-TGCTGTTGTTTTCAA 1432
Query 1236 AGACTTAGCTGATCTGTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAA 1295
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1433 AGACTTAGCTGATATATCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCAATGAA 1492
Query 1296 TTCTTTCTCATCTGAACTTGGGATGCAGTTTGGTACTTGTTTAGAGGCTCCACATGTGAT 1355
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 1493 TTCTTTCTCATCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTAT 1552
Query 1356 TGATCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCACTGTTCCTGGTAACTATCCTCT 1415
||||||||||||||||||||||||||| |||||||||| || |||| |||| ||||||||
Sbjct 1553 TGATCCTAATATGCAGGTGTGGGCTGGCGCAATCTCCAATGGTCCTAGTAATTATCCTCT 1612
Query 1416 AAACGCAAGTTATAGAACAGCTGAGGCATATGCATTCCAGGACGCTCTAGGGAAATCATT 1475
||| |||||||||| ||||||||| ||||| |||||||||| ||||| |||||||||||
Sbjct 1613 AAATGCAAGTTATAAAACAGCTGATACATATTCATTCCAGGATGCTCTTGGGAAATCATT 1672
Query 1476 GGAAGAAATCTGCACTATTGTACCAGGTGGCTCTCTTG-TATTCTTTCCAAGCTATAAGT 1534
||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 1673 GGAAGAAATCTGCACTATTGTACCAGGAGGCTCTC-TGATATTCTTTCCAAGCTATAAGT 1731
Query 1535 TGATGGAAAAACTTTGCACACGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGA 1594
||||||||||||| ||||| ||||||| ||||||||| | |||||||||||||||||||
Sbjct 1732 TGATGGAAAAACTCTGCACGCGTTGGCGTGAAACTGGGTAGTGGTCTCGGCTCTGCTTGA 1791
Query 1595 AAACA-GACCTTTTTATCGAACCAAGAGGAGGATCCAAGGACG-ATTTCGAAACTGTTCT 1652
||| | ||||||||| | |||||||||||||| || |||||| |||| || |||||||
Sbjct 1792 AAA-AGGACCTTTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTT-GATTCTGTTCT 1849
Query 1653 CAAGGAATACTATGATTCGATAAGCGGAAAGAACAGATTGA-TTGGAAGAAATAGCAGCG 1711
|||| ||| |||||||| ||| |||| ||||| | ||| | ||||||||||||| || |
Sbjct 1850 GAAGGGATATTATGATTCTATACGCGGGAAGAATAAATT-AGTTGGAAGAAATAGAAGAG 1908
Query 1712 TTAAGAAAGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCCAAG-AGAGGATCTGCA 1770
||||||||||||| || ||| ||||||| ||||||||||||||||| || ||| |||||
Sbjct 1909 CTAAGAAAGCAGGGCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAG-GGAGCTGCA 1967
Query 1771 TTTCTTGCAGTATGTAGAGGAAAGGTTTCAGAAGGGATGGATTTTTCTGATGACAACGCC 1830
||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1968 TTTCTTGCAGTATGTAGGGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCC 2027
Query 1831 AGGGCAGTGATAATTGTTGGCATTCCACTTCCAAACTTGGGCGATATTCTAGTCG-AGCT 1889
||||||||||||||||||||||||||| |||||||||| ||||||| ||||| | ||
Sbjct 2028 AGGGCAGTGATAATTGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGA-CT 2086
Query 1890 AAAGAGAAAATATAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTG 1949
|||| |||||||||||||||| |||| |||||||||| ||||||||||||||||| ||
Sbjct 2087 GAAGAAAAAATATAATGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATG 2146
Query 1950 GTATTGCCAACAGGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAG 2009
||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||
Sbjct 2147 GTATTGCCAACAGGCCTATCGTGCTCTAAATCAAGCTGCAGGAAGATGTATCCGGCATAG 2206
Query 2010 GTTTGATTATGGTGCCATCATATTCTTAGTTATTGTAGCTCTGAGGTTACCGACAACCAA 2069
||||||||||||||||||||||||||||| || | ||| || | || | | | ||
Sbjct 2207 GTTTGATTATGGTGCCATCATATTCTTAG--AT-G-AGC---GA--T-ACAAAGAGCAAA 2256
Query 2070 GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCA-TCTATCAAAGTGTATGATAATTTTG 2128
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2257 GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCAGTCTATCAAAGTGTATGATAATTTTG 2316
Query 2129 AAGCTTCTATGGAAGGACTAAGATATTTTTTCAGCAGTGTCAAGGAG-AGAGTTGACAGC 2187
|||| ||||||||||| | ||||||||||||| ||||||||||||| | |||||||||
Sbjct 2317 AAGCATCTATGGAAGGGTTGAGATATTTTTTCAACAGTGTCAAGGAGCA-AGTTGACAGT 2375
Query 2188 AAGATGTTAGAGTCTCATGA-G---C-----AGAA---CTTGTCCTCTG-AAAACCAAAG 2234
|||||||||| ||| || || | | |||| ||| |||| || ||||||||||
Sbjct 2376 AAGATGTTAGGGTCCCAGGACGATACTGTTGAGAAGAACTTTTCCT-TGGAAAACCAAAG 2434
Query 2235 -AAATGAATTC-GTAAGAAAGGAGAATCAGACTCAGAACAAATCTAGTCATGTGGAACCA 2292
||| |||| | | ||| ||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 2435 CAAA-GAATACAG-AAGGAAGGAAAATCAGATTCAGAACAAATCTAGTCAAGTGGAACCA 2492
Query 2293 AA 2294
||
Sbjct 2493 AA 2494
Score = 444 bits (240), Expect = 2e-123
Identities = 289/313 (92%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCACAAGAAGTAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTTCCACAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 80
Query 61 AAAAACCCTAAGAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTACCAACCC 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 81 AAAAACCCTAAAAATGTCTACCAGATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 140
Query 121 TACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGAGA 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 141 TACGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 200
Query 181 GATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAATCTCTGTCTTTG 240
|| ||||||| |||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 201 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGTACGGGCAAATCTCTGTCATTG 260
Query 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCT-AATGGAAATTT 299
|||||||| ||||||||||||||| ||| ||||||||||||| ||| | || || |||||
Sbjct 261 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTACAAATCTCGGCTTC-TGAAAGGGAATTT 319
Query 300 GTCTCATTCGAAA 312
|||||| ||||||
Sbjct 320 GTCTCACTCGAAA 332
Score = 435 bits (235), Expect = 1e-120
Identities = 408/487 (84%), Gaps = 29/487 (6%)
Strand=Plus/Plus
Query 2314 ACATTCATTCAAGTTAAAAG-GGAAGCTGAATGCTGCAAAGGAGTCATTGACCTTGACTG 2372
||||| |||||||| |||| ||||| ||||||||| | || ||| ||||||||||| ||
Sbjct 2631 ACATTTGTTCAAGTT-AAAGAGGAAGTTGAATGCTGTAGAGAAGTTATTGACCTTGAGTG 2689
Query 2373 CGAG-GTCCAACCTGAGCCTGGGTATTGTGAGG-AGTCATCGGTGACCAACTGTGATGAA 2430
|| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2690 CG-GTGTCCAACCTGAGCCTGGGTATTGTGAGGTA-TCATCGGTGACCAACTGTGATGAA 2747
Query 2431 GATCCAGAAACATCTTTTGTC---------TCTGGTATGATCAATGGTATTGCAACAGCC 2481
|||| |||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 2748 GATCTAGAAACATCTTTTGTCAAGGAAAGCTCTGGTATGATCAATGGTATTTCAGTTGCC 2807
Query 2482 AGACCATGTTCTAGCTCGAAGTATGAAAGCTCTAG-CCTAGAA-AC-AGGTCTGAGATCT 2538
|| ||||||||| ||||| | ||||||||||||| || | || | ||||| |||||||
Sbjct 2808 AGTCCATGTTCTTGCTCGGTGAATGAAAGCTCTAGTCCAACAACAATAGGTCGGAGATCT 2867
Query 2539 CTGAAGTCTCCTGATCAATTCTTAAAACGGCATGTATCTAATGCAAATTTCAGAAGATCT 2598
| || ||||||||||||||| ||||| | |||| |||||| | |||||||||||| ||||
Sbjct 2868 CCGAGGTCTCCTGATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCT 2927
Query 2599 CCTCTTGGAGCTGAATCGTC--T-GTA--A-CTCCTGAGAGATATTCCATTGGTGATATG 2652
|||||||||||||| ||||| | ||| | || |||||||||||||| ||||||| |
Sbjct 2928 CCTCTTGGAGCTGAGTCGTCCGTAGTAGCAACTTCTGAGAGATATTCCTTTGGTGACACC 2987
Query 2653 CGTAATATGACTCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCACATGTTTTG 2712
|||| | |||||||||||||||||||| |||| ||||||||||||||||| || | ||||
Sbjct 2988 CGTAGTTTGACTCTAGAAGCAGAGTCATCTTTCAACATGAGTGTTAATTCTCAAGCTTTG 3047
Query 2713 AAGAGAAGAAAGTTTACTA-CATCTCCAATCATCATTGACCTTGAAGAAGAAAACAGTAA 2771
||| ||||||||||||| | | ||||| | |||||||||||||||| |||||||| |
Sbjct 3048 AAGCGAAGAAAGTTTACCAGC-TCTCC--TG-TCATTGACCTTGAAGACGAAAACAGCGA 3103
Query 2772 TGCTCCT 2778
|||||||
Sbjct 3104 TGCTCCT 3110
Score = 331 bits (179), Expect = 2e-89
Identities = 233/259 (90%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 3026 ATTGCTCATTGGTTAATCAGAGACTCTGCA-CAAATTCTGAAAGCTCAAATGGTCAGGGT 3084
|||||||| ||||||||||||||||||||| ||||| |||| ||||||| ||||||||
Sbjct 3112 ATTGCTCAATGGTTAATCAGAGACTCTGCAGAAAATT-TGAAGGCTCAAAAGGTCAGGGA 3170
Query 3085 ATTTGGTGCCAGCAAGATGGATGTGTTTTCAAAACTATCTTC-TGCCCTTTCTGTAGTGT 3143
||||||||| |||||||||||||||||||||| |||||| || ||||||||||| ||| |
Sbjct 3171 ATTTGGTGCGAGCAAGATGGATGTGTTTTCAATACTATC-TCTTGCCCTTTCTGCAGTAT 3229
Query 3144 CCCAAACACCTGCCTTGGAATGCAAGTCATGGCTACTGATTCATCAAACGTCCAGTTTAT 3203
|||||||| || || ||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 3230 TCCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTT 3289
Query 3204 GAGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACGAATGATGCTGCAAGCAAGGA 3263
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 3290 GAGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACTAATGAAGCTGCAAGCAAGGA 3349
Query 3264 AACAAGGTTAACGCACAAG 3282
||| ||||| |||||||
Sbjct 3350 TTCAACGTTAAAGCACAAG 3368
Score = 113 bits (61), Expect = 7e-24
Identities = 64/65 (98%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 678 AGGCCGTCTACTAAAATCTTTCACTGTCCACAGTAATATGGAAGACATTGCTCGTGAAGC 737
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGCCGTCTACT-AAATCTTTCACTGTCCACAGTAATATGGAAGACATTGCTCGTGAAGC 958
Query 738 AGGAA 742
|||||
Sbjct 959 AGGAA 963
> Ahg911864 jgi|Araly1|911864|Al_scaffold_0001_2118
Length=1545
Score = 606 bits (328), Expect = 3e-172
Identities = 424/468 (91%), Gaps = 15/468 (3%)
Strand=Plus/Plus
Query 110 CTTACCAACCCTACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATC 169
|||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct 14 CTTATCAACCCTACGGAACCCATCTTGCGTTCATGAGCCGAGTCATATCTACGCTTTATC 73
Query 170 GTGCCCAGAGAGATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAAT 229
||||||| ||| |||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 74 GTGCCCAAAGATATGGTCACTCCCACACGTTGCTCGAGTCTCCCACGAATACAGGCAAAT 133
Query 230 CTCTGTCTTTGCTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCTA 289
|||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 134 CTCTGTCTTTGCTCTGCTCCGTTCTCCCTTGGCAAAAGAGCTATAAATCGCGGTTTCCAA 193
Query 290 ATGGAAATTTGTCTCATTCGAAAACGCAGCCCTCAGATATTGCTGGATCTAGTAATGTGG 349
|||||||||||||||||||||||||||||||||| | | ||||| ||||| |||||||
Sbjct 194 ATGGAAATTTGTCTCATTCGAAAACGCAGCCCTC--A-ACTGCTGCCTCTAGCAATGTGG 250
Query 350 AGCCACATGAACCTCAG-ATTCCC-ACCATATACTATGCTTCACGAACTCATGCTCAGAT 407
|||| | |||| | ||| | |||| |||||||||||||| | |||||||| ||||||||
Sbjct 251 AGCCTCCTGAA-C-CAGCAATCCCTACCATATACTATGC-T--CGAACTCACGCTCAGAT 305
Query 408 CACTCAAGTCATTCGTGAGTATCGAAAAACCGGTTACAGAGTTCCCATGACTGTATTGGG 467
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 306 CACTCAAGTCATTCTTGAGTATCGGAAAACCGGTTACAGAGTTCCTATGACTGTATTGGT 365
Query 468 TTCAAGGAAACGTTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATG-TAGACGAAA 526
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 366 TTCAAGGAAACGTTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGCT-GACGAAA 424
Query 527 AATGTCGGTTGCTCCTAAAAGATAAGAAAAACATAAAATGTGCCGAGT 574
|| | | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 AAC-T-G-TTGCTCCTAAAAGATAAGAAAAACATAAAATGTGCTGAGT 469
Score = 375 bits (203), Expect = 8e-103
Identities = 380/455 (84%), Gaps = 54/455 (12%)
Strand=Plus/Plus
Query 1678 GGAAAGAACAGATTGA-TTGGAAGAAATAGCAGCGTTAAGAAAGCAGGGTCTGTTATAAC 1736
|||||||||||||| | |||||||||||||||| |||||||||||| ||||| || ||||
Sbjct 637 GGAAAGAACAGATT-AGTTGGAAGAAATAGCAGAGTTAAGAAAGCATGGTCTTTTCTAAC 695
Query 1737 TGAGGCTCAAGATGATTCCAAGAGAGGATCTGCATTTCTTGCAGTATGTAGAGGAAAGGT 1796
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 696 TGAGGCTCAAGATGATTCCAAGAAAGGATCTGCATTTCTTGCAGTGTGTAGGGGAAAGGT 755
Query 1797 TTCAGAAGGGATGGATTTTTCTGATGACAACGCCAGGGCAGTGATAATTGTTGGCATTCC 1856
||||||| | || | |||||| || || || ||| ||||||||||||||
Sbjct 756 TTCAGAA--G--GG----CT-TGATGATTGCG-CA---CA--GATGATTGTTGGCATTCC 800
Query 1857 ACTTCCAAAC--TT-GGGCG-AT-A-----TT--C---TAGTCGAGCTAAAGAGAAAATA 1901
| |||||||| || || || | || | ||||||| ||||||||||||||
Sbjct 801 ATTTCCAAACTTTTCTAACGAATCACTTTCTTGCCAGGTAGTCGAACTAAAGAGAAAATA 860
Query 1902 TAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTGGTATTGCCAACA 1961
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 861 TAAGGATACCAACAAATCATCTAAAAA-C--CTTGGAGGGAGTGAGTGGTATTGCCAACA 917
Query 1962 GGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAGGTTTGATTATGG 2021
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 918 GGCGTATCATGCTTTAAATCAAGCAGCAGGACGATGTATCCGGCATAGGTTTGATTATGG 977
Query 2022 TGCCATCATATTCTTAGTTATTGTAGCTCTGAGGTTACCGACAACCAAGGAACAGAGCGT 2081
|||||||||||||||| || | | | || | | | ||||||||||||||||
Sbjct 978 TGCCATCATATTCTTA---AT---A-C-C-GA-----C--A-A-CCAAGGAACAGAGCGT 1019
Query 2082 CTATTTCAAAGTGGCTAAGGCA-TCTATCAAAGTG 2115
||||||||||||| |||||||| ||||||||||||
Sbjct 1020 CTATTTCAAAGTGACTAAGGCAATCTATCAAAGTG 1054
Score = 158 bits (85), Expect = 3e-37
Identities = 104/113 (92%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 2664 TCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCACATGTTTTGAAGAGAAGAAA 2723
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1287 TCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCCCATGCTTTGAAGAGAAGAAA 1346
Query 2724 GTTT-ACTACATCTCCAATCATCATTGACCTTGAAGAAGAAAACAGTAATGCT 2775
||| | ||| |||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 1347 GTTCCA-TACCTCTCCAGTCATCATTGACCTTGAAGAAGAAAGCAGCAATGCT 1398
Score = 154 bits (83), Expect = 4e-36
Identities = 90/93 (97%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 3141 TGTCCCAAACACCTGCCTTGGAATGCAAGTCATGGCTACTGAT-TCATCAAACGTCCAGT 3199
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 1446 TGTCCCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTG-TGTCATCAAACGTCCAGT 1504
Query 3200 TTATGAGCAAAATTTTGTTCTTTGCTGATCATC 3232
|||||||||||||||||||||||||||||||||
Sbjct 1505 TTATGAGCAAAATTTTGTTCTTTGCTGATCATC 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129700208784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5