BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20770.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472313 jgi|Araly1|472313|fgenesh2_kg.1__2267__AT1G20770.1 1142 0.0
> Ahg472313 jgi|Araly1|472313|fgenesh2_kg.1__2267__AT1G20770.1
Length=856
Score = 1142 bits (618), Expect = 0.0
Identities = 725/777 (93%), Gaps = 6/777 (1%)
Strand=Plus/Plus
Query 44 CTCGTGTAAGCTTCGATTTGTTGATTCGCGTGTGTTGGAGCTAAATTTCGATGGCGGAGA 103
||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 3 CTCGTGTAAGCTTTGAATTGTTGATTCTCGTGTGTTGGAGCTAAATTCCGATGGCGGAGA 62
Query 104 TTTACGAGGAAGGAGATGAAT-CAGTGGATGTGAATAAAGAATCAGAAGTGAAAACTGAG 162
||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||
Sbjct 63 TTTACGAGGAAGGAGATGAATCCA-TGGATGTGAATAATGAAGCAGAAGTGAAAACTGAG 121
Query 163 CTGGGAAAAGGGGGAGGAGATGAGAATGTTTTGCAGTTTCTAGATTCGTTGGATGGATAT 222
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 122 CTGGGAAAAGAGGGAGGAGATGAGAATGTTTTGCAGTTTCTAGATTCGTTGGATGGCTAT 181
Query 223 TTAACGCTTATGGATTCTGTGAATTCTAAGCTTCGAGAGGGATGGTTTGATCTAGCTAGT 282
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTAACTCTTATGGATTCTCTGAATTCTAAGCTTCGAGAGGGATGGTTTGATCTAGCTAGT 241
Query 283 GCTCGACATTCTATGGGAACTTTACGCATCAACAGCACTCTCTTAGATCTTAAGTATCAT 342
||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct 242 GCTCGGCATTCTATGGGAACTTTACGTATTAATAGCACTCTCTTAGACCTTAAGTATCAT 301
Query 343 CCCGCTTCTTCAACATTGCAAGTGACTGACCAAGATGTTGAATCTTTGGGATCAGTACCT 402
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 302 CCCGCTGCTTCAACATTGCAAGTCACAGACCAAGATGTTGAATCTTTGGGATCAGTACCT 361
Query 403 CATTTTGCTTTGTCCAAGTGGGCTTCCAAGGGCGGTAGCAGGAAA-GGCAAAGACTTCTC 461
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 362 CATTTTGCTTTGTCCAAGTGGGCTTCCAAGGGCGGTAGC-GGAAAAGGCAAAGACTTGTC 420
Query 462 TACTGATACAGATTCGGAGATAGGCTCACCTCTCAGCCCACAGCTACGACATCGAGGAGT 521
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 421 TACTGATACAGATTCGGAGATAGGCTCACCTCTCAGCCCACAGCTACGGCATCGAGGATT 480
Query 522 TTCTGAAGAGAAACCATCAGCCAAGGATGAAACCGTTTTAGCAGCTGATGAAGAGATAAA 581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 481 TTCTGAAGAGAAACCATCAGCCAAGGATGAAACCATTTTAGCAGCTGATGAAGAGATTAA 540
Query 582 GAAAGAACGGGCAAAATCTCTGTCAGTATTTGGAGGTCT-AGTCTCTCCTAAGCTGCGTG 640
||||||| | || ||||||||||| ||||||||||| || |||||| |||||||| || |
Sbjct 541 GAAAGAAAGAGCGAAATCTCTGTCGGTATTTGGAGG-CTTAGTCTCGCCTAAGCTACGCG 599
Query 641 GCGCTCAACAATCATTTGAAACAGCTCTTGAAACTCTGGTGGAAATAGCCAACATGCGTG 700
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 GCGCTCAACTTTCATTTGAGACAGCTCTTGAAACTCTTGTGGAAATAGCCAACATGCGTG 659
Query 701 CATCGATGATATCTGCCTTTGAGCGGATCACAGAGAAGTGAAGTTCCTTGGTAACAACTG 760
|||||||| ||||||||||||||||| ||||||||||||||||||||| || || ||||
Sbjct 660 CATCGATGCTATCTGCCTTTGAGCGGCTCACAGAGAAGTGAAGTTCCTAAGTTACGACTG 719
Query 761 ATCCTGAAATGTGCTCAGTGGATTCAACGGAAACAGAATGGAGCCAACCTCAAAGAC 817
| ||||||||||||||| |||||||| |||| |||||||||||||| |||||||||
Sbjct 720 ACCCTGAAATGTGCTCAATGGATTCAGTGGAAGCAGAATGGAGCCAATCTCAAAGAC 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5