BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20780.1
Length=2877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921044 jgi|Araly1|921044|scaffold_102325.1 4056 0.0
Ahg476794 jgi|Araly1|476794|fgenesh2_kg.2__1924__AT1G76390.2 1735 0.0
> Ahg921044 jgi|Araly1|921044|scaffold_102325.1
Length=2458
Score = 4056 bits (2196), Expect = 0.0
Identities = 2345/2418 (97%), Gaps = 6/2418 (0%)
Strand=Plus/Plus
Query 278 GTGAGTTTGAAGGATTAAGATGGTTGGAAGCTCGGATGGTGACCAGTCAGATGATAGCTC 337
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2 GTGAGTTTGAAGGATTAAGATGGTTGGAAGCTCGGATGGTAACCAGTCAGATGATAGCTC 61
Query 338 TCATTTTGAGCGAGGAGTAGATCATATCTATGAAGCATTCATCTGCCCATTGACAAAGGA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCATTTTGAGCGAGGAGTAGATCATATCTATGAAGCATTCATCTGCCCATTGACAAAGGA 121
Query 398 GGTTATGCATGATCCTGTCACTTTAGAGAATGGTCGAACATTCGAGCGTGAAGCCATTGA 457
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 GGTTATGCATGATCCTGTCACTTTAGAGAATGGCCGAACATTCGAGCGTGAAGCCATTGA 181
Query 458 GAAATGGTTCAAGGAGTGTCGGGACAGTGGGAGACCTCCTTCTTGCCCTTTGACATCTCA 517
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 182 AAAATGGTTCAAGGAGTGTCGGGATAGTGGGAGACCTCCATCTTGCCCTTTGACTTCTC- 240
Query 518 G-GAGCTGA-CTAGCACTGATGTAAGCGCCAGCATAGCTCTGCGTAACACTATCGAAGAG 575
| ||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GTGAGCTCAGC-AGCACTGATGTAAGCCCCAGCATAGCTCTGCGTAACACTATCGAAGAG 299
Query 576 TGGAGATCCAGGAATGATGCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTTTTTAGGG 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGAGATCCAGGAATGATGCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTTTTTAGGA 359
Query 636 AATGCTGAGACAGATATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATC 695
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATGCTGAGACCGATATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATC 419
Query 696 CGATCAAATAGGCATGGTGTACGCAACTCTCAGCTTATCCATATGATCATCGACATGTTA 755
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGATTAAATAGGCATGGTGTACGCAACTCTCAGCTTATCCATATGATCATCGACATGTTA 479
Query 756 AAAAGTACTAGCCATAGAGTGCGGTATAAGGCTCTACAAACTCTGCAAGTTGTCGTTGAA 815
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 AAAAGTACTAGCCATAGAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTTGTCGTTGAA 539
Query 816 GGAGATGATGAGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTACACTAGTTAAG 875
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGATGACGAGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTACACTAGTTAAG 599
Query 876 TTCTTATCACATGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCTTGCTGTTTGAGCTC 935
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 TTCTTATCACACGAGCCATCAAAGGGGAGGGAGGCTGCTGTTTCCTTGCTGTTTGAGCTC 659
Query 936 TCTAAATCAGAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTAATATTATTG 995
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 TCTAAATCAGAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTTATATTATTG 719
Query 996 GTTGGTCTGACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACC 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTGGTCTGACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACC 779
Query 1056 TTGGAAAATATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTCATATGGTAGACTC 1115
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGAAAACATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTCATATGGTAGACTC 839
Query 1116 CAGCCTCTTCTAGGCAAACTCCTTGAAGGTTCACCTGAAACAAAACTCTCTATGGCTTCC 1175
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 CAGCCTCTTCTAGGAAAACTCCTTGAAGGCTCACCTGAAACAAAACTCTCTATGGCTTCC 899
Query 1176 TTTCTCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTCTCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGT 959
Query 1236 TCTTCTCTTGTCGATCTTATGAGAAGTGGTGACATGCCCCAACGGGAAGCTGCCTTGAAA 1295
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 960 TCTTCTCTTGTCGATCTTATGAGAACTGGTGACATGCCCCAACGGGAAGCTGCTTTGAAA 1019
Query 1296 GCTCTTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATT 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTCTTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATT 1079
Query 1356 CTCCCCCCACTTATCAAAGATCTGTTTTATGTGGGGCCAAACAACCTTCCAATTCGGTTG 1415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTCCCCCACTTATCAAAGATCTGTTTTATGTGGGGCCAAACAACCTTCCAATTCGGTTG 1139
Query 1416 AAAGAAGTCTCTGCCACTATTCTTGCTAACATAGTGAACATCGGGTATGACTTTGACAAA 1475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 AAAGAAGTCTCTGCCACTATTCTTGCTAACATAGTAAACATCGGGTATGACTTTGACAAA 1199
Query 1476 GCCACTCTTGTTTCAGAGAACAGAGTGGAGAATCTGCTCCATCTAATTAGCAACACAGGT 1535
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTCACTCTTGTTTCAGACAACAGAGTGGAGAATCTGCTCCATCTAATTAGCAACACAGGT 1259
Query 1536 CCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACCAGTTGCCCAAAAACA 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACCAGTTGCCCAAAAACA 1319
Query 1596 GTTCCAAAAGTTGTTTATGCAATTAAAACCTCCGGTGCAATCATCAGTTTGGTTCAGTTT 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTTCCAAAAGTTGTTTATGCAATTAAAACCTCCGGTGCAATCATCAGTTTGGTTCAGTTT 1379
Query 1656 ATAGAGGTCCGAGAGAATGATGATTTGCGGTTGGCTTCCATAAAGCTTCTTCATAACCTT 1715
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1380 ATAGAGGTCCGAGAGAATGATGATTTGCGTTTGGCTTCCATAAAGCTTCTTCATAACCTT 1439
Query 1716 TCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCACTGCTGGACAACTCGGA 1775
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1440 TCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCACTGCAGGACAACTCGGA 1499
Query 1776 AGCCTTGTTGCTATCATTTCAGAAAAGACACCAATCACTGAAGAACAGGCTGCTGCTGCT 1835
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 AGCCTTGTTGCAATCATTTCAGAAAAGACACCAATCACTGAAGAACAGGCTGCAACTGCT 1559
Query 1836 GGGCTCTTAGCTGAATTGCCAGATAGGGATTTGGGTCTTACTCAGGAAATGTTAGAAGTT 1895
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1560 GGGCTCTTAGCTGAATTGCCAGATAGGGATTTGGGTCTGACTCAGGAGATGTTAGAAGTT 1619
Query 1896 GGTGCTTTTGAAAAAATCATATCCAAAGTGTTTGGAATCCGCCAAGGGGATATCAAGGGA 1955
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1620 GGTGCTTTTGAAAAAATCATCTCCAAAGTGATTGGAATCCGCCAAGGGGATATCAAGGGA 1679
Query 1956 ATGAGGTTTGTGAATCCTTTTCTGGAAGGACTTGTGCGTATACTTGCTAGGATTACTTTT 2015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATGAGGTTTGTGAGTCCTTTTCTGGAAGGACTTGTGCGTATACTTGCTAGGATTACTTTT 1739
Query 2016 GTTTTCAACAAAGAGGCTCGGGCCATTAACTTTTGCCGTGAGCACGATGTTGCGTCACTC 2075
||| |||||||||||||||||||||||| ||||||||||||| || ||||||| || |||
Sbjct 1740 GTTGTCAACAAAGAGGCTCGGGCCATTACCTTTTGCCGTGAGTACAATGTTGCTTCGCTC 1799
Query 2076 TTCCTTCATCTGCTCCAATCCAACGGGCAAGATAACATACAGATGGTGTCCGCCATGGCT 2135
|||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1800 TTCCTTCATCTGCTTCAATCCAACGGTCAAGATAACATCCAGATGGTTTCCGCCATGGCT 1859
Query 2136 TTAGAGAATCTTTCACTAGAGTCTATAAAGCTGAC-ACGGATGCCTGATCCGCCTCCTGT 2194
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 1860 TTAGAGAATCTTTCACTAGAGTCTATAAAGCTGACTA-GGATGCCTGATCCGCCTCCTCT 1918
Query 2195 GAACTACTGTGGCTCGATCTTTTCGTGTGTGAGAAAACCACACGTTGTAAACGGGCTGTG 2254
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1919 GAACTACTGTGGCTCGATCTTTTCATGTATGAGAAAACCACACGTTGTAAACGGGCTATG 1978
Query 2255 CAAGATCCACCAGGGAATATGTTCATTAAGAGAAACATTTTGCCTTGTCGAAGGAGGAGC 2314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1979 CAAGATCCACCAGGGAATATGTTCATTAAGAGAAACATTTTGCCTTGTCGAAGGAGAAGC 2038
Query 2315 TGTGGAGAAATTAGTGGCTCTATTAGACCATGAAAATGTGAAAGTGGTTGAGGCCGCACT 2374
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2039 TGTGGAGAAATTAGTGGCTCTATTAGATCATGAAAATGAGAAAGTGGTTGAGGCCGCACT 2098
Query 2375 TGCAGCTCTATCGAGCTTACTAGAAGACGGGTTAGATGTAGAGAAAGGGGTCAAGATACT 2434
|||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2099 GGCAGCTCTTTCAAGCTTACTCGAAGACGGACTAGATGTAGAGAAAGGGGTCAAGATACT 2158
Query 2435 CGATGAAGCGGATGGGATACGGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAG 2494
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2159 TGATGAAGCGGAGGGGATACCGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAG 2218
Query 2495 GCTGACAAGGAGAGCGGTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATAGCAAG 2554
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2219 GCTGACGAGGAGAGCGGTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATCGCAAG 2278
Query 2555 AGAGGTGGCAGAGGAACAGAGCCTGAGCGCTGCACTTGTGGACGCTTTCCAAAACGCTGA 2614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2279 AGAGGTGGCAGAGGAACAGACCCTGAGCGCTGCACTTGTGGACGCTTTCCAAAACGCTGA 2338
Query 2615 TTTTAGAACGAGACAGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTT 2674
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 TTTTAGAACGCGACAGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTT 2398
Query 2675 CTCAAGTATATTCCCAAA 2692
|||| |||||||||||||
Sbjct 2399 CTCAGGTATATTCCCAAA 2416
> Ahg476794 jgi|Araly1|476794|fgenesh2_kg.2__1924__AT1G76390.2
Length=2858
Score = 1735 bits (939), Expect = 0.0
Identities = 1979/2468 (80%), Gaps = 124/2468 (5%)
Strand=Plus/Plus
Query 302 TGGAAGCTCGGATGGTGA-CCAGTCAGATGATAGCTCTCATTTTGAGCGA-GGAGTAGAT 359
|||||| | |||||| | ||| ||||| ||||||| || || |||| | ||| | |||
Sbjct 254 TGGAAGTTGGGATGG-AAGCCAATCAGAAAATAGCTCACAATTCGAGCCAGGGA-TTGAT 311
Query 360 CATATCTATGAAGCATTCATCTGCCCATTGACAAAGGAGGTTATGCATGATCCTGTCACT 419
|||| || ||||| || ||||| |||||||| ||| | ||||||||| ||||||| |||
Sbjct 312 AATATATACGAAGCTTTTATCTGTCCATTGACTAAGCAAGTTATGCATAATCCTGTGACT 371
Query 420 TTAGAGAATGGTCGA-ACATTCGAGCGTGAAGCCATTGAGAAATGGTT-CAAGGAGTGTC 477
||||||||||||| | ||||| |||||||| || |||||||||||||| ||| || ||||
Sbjct 372 TTAGAGAATGGTC-AGACATTTGAGCGTGATGCTATTGAGAAATGGTTCCAA-GAATGTC 429
Query 478 G-GGACAGTGGGAGACCTCCT-TCTTGCCCTTTGACATCTC-AGGAGCTGACTAGCACTG 534
| | | | || | |||| || ||||| ||| | || || | || |||||| || |||||
Sbjct 430 GCGAAAACTGTCA-ACCT-CTATCTTGTCCTATAACTTC-CAAGCAGCTGAGTATCACTG 486
Query 535 ATGTAAGCGCC-AGCATAGCTCTGCGTAACACTATCGAAGAGTGGAGATCCAGGAATGAT 593
|| ||||| || || |||||| | ||||||||||| |||||||||||| | |||||||||
Sbjct 487 ATCTAAGC-CCGAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCTAGGAATGAT 545
Query 594 GCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTT-TTTAGGG-AATGCTGAGAC-AGAT 650
||| |||||||| ||||||||||||||||| || ||| ||| ||||||||||| | ||
Sbjct 546 GCTTTGAAGCTTGATATTGCTCGTCAGTCACT-TTATTT-GGGAAATGCTGAGACTA-AT 602
Query 651 ATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATCCGATCAAA--TAGGC 708
||||||| |||||||| | |||| ||| |||||||||||| ||| || | ||| |||||
Sbjct 603 ATTTTGCTAGCTTTGAAGAATGTCCGAGAGATTTGCAGGAACATACG-T-AAACTTAGGC 660
Query 709 ATGGTGTACGCAACT-CTCAGCTT-ATCCATATGATCATCGACATGTTAAAAAGTACTAG 766
| |||| ||||| | |||||||| || | |||| | ||||||| ||||||||| |||
Sbjct 661 AACGTGTGCGCAA-TCCTCAGCTTGTTCGGT-TGATTACCGACATGCTAAAAAGTAGTAG 718
Query 767 CCATAG-AGTGCGGTATAAGGCTCTACAAACTCTGCAAGTTGTCGTTGAAGGAGATGATG 825
||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 719 TCAT-GAAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 777
Query 826 AGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTAC-ACTAGTTAAGTTCTTATCA 884
|||||||||| |||||||||||||| ||||| |||||||| | ||||||||||||| ||
Sbjct 778 AGAGCAAGGCAATAGTAGCTGAAGGAGACACCGTGCGTACTA-TAGTTAAGTTCTTGTCC 836
Query 885 CATGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCTTGCTGTTTGAGCTCTCTAAATCA 944
|| ||||||||||||||||||||||||||||||||| || |||| |||||||| |||||
Sbjct 837 CAAGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCGTGATGTTCGAGCTCTCCAAATCC 896
Query 945 GAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTAATATTATTGGTTGGTCTG 1004
||||| || |||||||||||||| || || | ||||||| | || |||||||||||||||
Sbjct 897 GAAGCATTATGCGAGAAGATTGGATCAATCCGTGGAGCAATCATCTTATTGGTTGGTCTG 956
Query 1005 ACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGAT-AGAACCTTGGA-AA 1062
||||||||||| ||||| |||||||||| |||||||||||||||| | ||| ||| | ||
Sbjct 957 ACAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATCA-AACTTTG-ACAA 1014
Query 1063 A-TATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTC-ATATGGTAGACTCCAGCC 1120
| | ||||||| |||||||||| |||| | ||||||||| | | |||||||||| |||||
Sbjct 1015 ACT-TGGAGAGATCAGAGGAAAATGTTCGACAGATGGCTACCA-ATGGTAGACTGCAGCC 1072
Query 1121 TCTTCTAGGC-AAACTCCTTGAAGGTTCACCTGAAACAAAACTCTCTATGGCTTCCTTTC 1179
||| || | | ||||| |||||||||||||||||||||||| |||| ||||||| || ||
Sbjct 1073 TCTGCTTG-CTAAACTTCTTGAAGGTTCACCTGAAACAAAAGTCTCCATGGCTTTCTATC 1131
Query 1180 TCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGTTCTT 1239
| |||| ||| |||| |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1132 TTGGGGTTCTTGCCTTGAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTT 1191
Query 1240 CTCTTGTCGATCTTATGAGAAGTGGTGACATGCCCCAACGGGAAGCTGCCTTGAAAGCTC 1299
||||| ||||||||||||||| | | ||||||| |||||||||||||| ||| |||||
Sbjct 1192 CTCTTATCGATCTTATGAGAACTCGCGACATGCGTCAACGGGAAGCTGCTTTGGGAGCTC 1251
Query 1300 TTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATTCTCC 1359
||||||| ||||||||||| ||||||||||| || ||||| |||| || ||||||||||
Sbjct 1252 TTAACAACATCTCATCGTTTGAAGGGAGTGCCAAAGTCTTAATCAACACCGGAATTCTCC 1311
Query 1360 CCCCACTTATCAAAGATCT-GTTTTATGTGGGGCCAAACAACCTTCCAATTCGG-TTGAA 1417
| || ||||||||||| || ||| ||||| ||||||||| | ||||||||||| || ||
Sbjct 1312 CACCGCTTATCAAAGA-CTTGTTCTATGTTGGGCCAAACCAGCTTCCAATTCGACTT-AA 1369
Query 1418 AGAAGTCTCTGCCACTATTCTTGCTAACATAGTGAACATCGGGTATGACTTTGACAAAG- 1476
||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 1370 AGAAGTCTCCGCCACCATTCTTGCTAATATAGTGAACATTGGCTATGAATTTGACAAAGT 1429
Query 1477 -CC------AC-T---C-------T-T-GTTTCAGAG-AACAGAGTGGAGAATCTGCTCC 1515
|| || | | | | ||||||||| || | ||||||||| || ||||
Sbjct 1430 TCCTGTTGGACCTGATCACCAAACTCTTGTTTCAGAGGAA-ATAGTGGAGAACCTACTCC 1488
Query 1516 ATCTAATTAGCAACACAGGTCCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGAC 1575
| |||| ||||||||| ||||||| |||||| | ||| |||||| ||||||||||||||
Sbjct 1489 AACTAACTAGCAACACGGGTCCAGAAATCCAGGGAAAGTTGTTGGCGGTTCTTGTTGGAC 1548
Query 1576 TCACCAGTTGCCCAAAAACAGTTCCAAAAGTTGTTTATGCAATTA-AAACCTCCGGTGCA 1634
|||| || || ||||| | ||| || ||||||| ||| || | |||| || | |||
Sbjct 1549 TCACGAGCTGTCCAAACTCGGTTATTAATGTTGTTTCTGCGATCAGAAAC-TCAGCTGCC 1607
Query 1635 ATCATCAGTTTGGTTCAGTTTATAGAGGTCCGA-GAGAATGATGATTTGCGGTTGGCTTC 1693
||||| || |||||||||||| | ||| | | | ||||| ||||||||||| || |||||
Sbjct 1608 ATCATTAGCTTGGTTCAGTTTGTTGAGATTC-ATGAGAACGATGATTTGCGTTTAGCTTC 1666
Query 1694 CATAAAGCTTCTTCATAACCTTTCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATG 1753
|| ||||| ||||| ||| |||||||| |||||||||||||||||| || | || |
Sbjct 1667 TATCAAGCTACTTCACAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGTGTTGCG 1726
Query 1754 TGGCACTGCTGGACAACTCGGAAGCCTTGTTGCTATCATTTCAGAAAAGACA-C--CAAT 1810
|||||||| |||||| ||||||| ||||||||| ||||| ||||| || ||| | ||||
Sbjct 1727 TGGCACTGTTGGACAGCTCGGAAACCTTGTTGCGATCATATCAGAGAATACAACAACAAT 1786
Query 1811 CACTGAAGAACAGGCTGCTGCTGCTGGGCTCTTAGCTGAA-TTGCCAGATAGGGATTTGG 1869
|||||| ||||| ||||| |||||||| || ||||||||| || || || || |||||||
Sbjct 1787 CACTGAGGAACAAGCTGCAGCTGCTGGACTTTTAGCTGAACTT-CCTGAGAGAGATTTGG 1845
Query 1870 GTCTTACTCAGGAAAT-GTTA-GAAGTTGGTGCTTTTGAAAAAATCATATCCAA-AGT-G 1925
|||| || | || || |||| || | ||||||||||| |||||||| ||||| | | |
Sbjct 1846 GTCTCACA-ATGAGATTGTTAAGA-GAAGGTGCTTTTGAGAAAATCATCTCCAAGA-TAG 1902
Query 1926 TTTGGAATCCGCCAAGGGGATATCAAGGGAATGAGGTTTGTGA-ATCCTTTTCTGGAAGG 1984
|| || || |||||||| || || | |||||| |||| | || | | ||| || |||||
Sbjct 1903 TT-GGTATTCGCCAAGGAGAAATTAGGGGAATCCGGTTCGAGAGAACATTT-CTCGAAGG 1960
Query 1985 ACTTGTGCGTATACTTGCTAGGATTACTTTTGTTTTCAACAAAGAGGCTCGGGCCATTAA 2044
|||||| |||| || ||| |||| || || | ||| ||| ||| ||| ||| ||
Sbjct 1961 ACTTGTTAGTATTCTCGCTCGGATCACCTTCGCACTCACCAAGGAGACTCATGCCGTTT- 2019
Query 2045 CTTT-TGCCGTGAGCACGATGTTGCGTCACTCTTCCTTCATCTGCTCCAATCCAACGGGC 2103
| || ||| ||||| || || || | ||||| ||||| |||| || ||||||||| | |
Sbjct 2020 CGTTCTGCTGTGAGAACAATCTTACTTCACTTTTCCTGGATCTTCTTCAATCCAACAGTC 2079
Query 2104 AAGATAACATACAGATGG-TGTCCGCCATGGCTTTAGAGAATCTTTCACTAGAGTCTATA 2162
|||||||||| ||||||| | || || || || || |||||||||||||| || || | |
Sbjct 2080 AAGATAACATCCAGATGGCT-TCTGCAATAGCATTGGAGAATCTTTCACTTGAATCCA-A 2137
Query 2163 -AAGC-TGACACGGATGCCTGATCCGCCTCCTGTGAACTACTGTGGC-TCGATCTTTTCG 2219
|| | | ||| ||| || || | ||||||| |||||||||| | || ||||||||
Sbjct 2138 GAATCAT-ACAAAGATACCCGAACTGCCTCCTCCCAACTACTGTG-CATCTATCTTTTCA 2195
Query 2220 TGTGTGAGAAAACCACAC-GTTGTAA-ACGGGCTGTGCAAGATCCACCAGGGAATATGTT 2277
||| |||| ||||||| | || || | ||| | ||||||||||| || || |||||||
Sbjct 2196 TGTCTGAGCAAACCAC-CTGTAGTTCTA-GGGATTTGCAAGATCCATCAAGGTATATGTT 2253
Query 2278 CATTAAGAGAAA-CATTTTGCCTTGTCGAAGGAGGAGCTGTGGAGAAATTAGTGGCTCTA 2336
|| | ||||||| | ||||| || || |||||| ||| || || || || || | |||
Sbjct 2254 CAGTGAGAGAAAGC-TTTTGTCTCGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTC 2312
Query 2337 TTAGACCATGAAAATGTGAAAGTGGTTGAGGCC-GCACTTGCAGCTCTATCGAGC-TTAC 2394
|||||||||||||| | ||| ||||||| | || |||||||||||||| || | | ||
Sbjct 2313 TTAGACCATGAAAACGAGAAGGTGGTTG-GACCAGCACTTGCAGCTCTTTCTA-CATTGT 2370
Query 2395 TAGAAGACGGGTTAGATGTAG-AGAAAGGGGTCAAGAT--ACTCGATGAAGCGGATGGGA 2451
|||||||||| |||||||| | | || || || | ||| | | |||||||| |||||||
Sbjct 2371 TAGAAGACGGTTTAGATGTTGTACAA-GGAGTGA-GATTGATT-GATGAAGCAGATGGGA 2427
Query 2452 T-ACGGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAGGCTGACAAGGAGAGCG 2510
| || | |||| |||||||||| |||||| |||||||||| | | | |||||
Sbjct 2428 TTACACC-TATATTAAACGTTCTTTTGGAGAATCGAACAGAGAATTTAAGGATTAGAGCT 2486
Query 2511 GTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATAGCAAGAGAGGTGGCAGAGGAA 2570
||||||||||| || |||||||| || |||||||| ||||| ||||| |||| ||| |||
Sbjct 2487 GTTTGGATGGTTGAGAGGATCTTACGTATTGAAGAAATAGCTAGAGAAGTGGGAGAAGAA 2546
Query 2571 CAGAGCCTGAGC-GCTGCACTTGTGGACGC-TTTCCAAAACGCTGATTTTAGAACGAGAC 2628
|| | | | | | || |||||||||||||| |||| ||||||| |||||||| ||| | |
Sbjct 2547 CAAAACGTAA-CTGCAGCACTTGTGGACGCCTTTC-AAAACGCAGATTTTAGGACGCGGC 2604
Query 2629 AGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTTCTCAAGTATATTC- 2687
|||| |||||||| ||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 2605 AGATTGCTGAGAAGGCGTTGAGGCACATCGATAAAATCCCAAACTTCTCTGGTATATTCA 2664
Query 2688 CCAAACAT 2695
|||| |||
Sbjct 2665 CCAA-CAT 2671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108595288495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5