BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20795.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911918 jgi|Araly1|911918|Al_scaffold_0001_2172 1157 0.0
> Ahg911918 jgi|Araly1|911918|Al_scaffold_0001_2172
Length=1356
Score = 1157 bits (626), Expect = 0.0
Identities = 969/1128 (86%), Gaps = 50/1128 (4%)
Strand=Plus/Plus
Query 14 GCTTACCTCTGCCTCTCTTCGAAAAGATCTTATTCAGATTGGATCCCATATCTCTGGTTA 73
|||||||| |||||||| |||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 8 GCTTACCTTTGCCTCTCCTCGAAAAGATTTTATTCAAATTGGATCCCAAATCTCTGGCTA 67
Query 74 TGATGAAATGCACGAGAAGATCTTTCAACTCCCATATATCTGAAGATCCGTATTTTAAAT 133
||||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct 68 TGATGCAATGCACTAGAAGATCTATCAACTCTCATATATCTGACGATCCGTACTTTAAAT 127
Query 134 CCAAGTACTTGTCTGGGGTCAGATCCGGTTTGCTTCACATCTCCAGCTTCGGCTCCAAAA 193
|||| ||||||||||||||| |||||||||||||||| |||||| |||| ||||||| |
Sbjct 128 CCAAATACTTGTCTGGGGTCGGATCCGGTTTGCTTCAAATCTCCGGCTTTGGCTCCACCA 187
Query 194 ACCTCTTCTGCAACCCTTTCGGCGATTCTA-GTTCATCCAGGCACCACGATTTCTTAGAT 252
|||||||||||||||||||| | |||||| ||| || ||| || | | |||||||||
Sbjct 188 CCCTCTTCTGCAACCCTTTCGTCAATTCTAGGTT-ATTCAGAAACAAAGCTTTCTTAGAG 246
Query 253 ATCACGA-C-AAGGATTCTCGGCTCTTGTTCTGGCCTCCTCCTACTCTTCATCGATGGTC 310
|||| | | | ||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 247 ATCA-AATCTCA-GATTCTCTCCTTTTGTTCTGGCCTTCTCCTACTCTTCATCGATGGTC 304
Query 311 TCTGTGTCGCGAATCCGCTCACAAAGAGGTATCGATTCCTGAATTACTCTAAATCAATGT 370
|||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 305 TCTGTGTCGCAAATCCGCTCACAAAGAGGTATCGATTCCTGGATCACTCTAAGTCAATGT 364
Query 371 TTCTTAGTCGTGTTGACAGATGGGGAATTCTAAA-TTTTGACCTTCCATCGGAA-AAAAT 428
|||||||||||||||||||| |||||| | ||| |||| |||||| || || | |||||
Sbjct 365 TTCTTAGTCGTGTTGACAGAAGGGGAAATGTAAGCTTTT-ACCTTCGAT-GGCATAAAAT 422
Query 429 GAATCGCCTTGGTCTTGCGGTTGATCAAAT--A---A-C---TCAGAGATT-CAAAGTTG 478
||||||| ||||| |||||||||||||||| | | | |||| | || ||||||||
Sbjct 423 GAATCGCATTGGTTTTGCGGTTGATCAAATTGATCGAACAACTCAG-GCTTTCAAAGTTG 481
Query 479 TCTGCATGAACGAAACTGA-GACTTCGGATCCCGACGAAACCATGTATCAGTTCGAGATT 537
||||||||||||| ||||| | ||||| |||| ||||||||||||||||| |||||||||
Sbjct 482 TCTGCATGAACGATACTGATG-CTTCGAATCCAGACGAAACCATGTATCAATTCGAGATT 540
Query 538 CTCACAGGAGATTCGTGTTGGAGATTGTCGGCAACAACCATTACTTGCAGCGCAAGTG-T 596
||| |||||||| |||||||||||||||| |||||| |||||||||| |||||||| |
Sbjct 541 AGCACTGGAGATTCTTGTTGGAGATTGTCGGAAACAACTATTACTTGCACCGCAAGTGGT 600
Query 597 CCTCATTATGGATAAGAAACCTGTTTACTTTGACGGATCTGTTCACTGGTTGAGAAAGGA 656
| |||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 601 C-TCATCAAGGATAAGAAACCGGTTTACTTTGACGGATCTCTTCACTGGTTGAGAAAGGA 659
Query 657 CGGAAGCATTTTATCGTTCAATCCAGAAACAGAGCAAGCACGGCTGATTCCAATCAAGTT 716
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 CGGAAGCATTTTAGCTTTCAATCCAGAAACAGAGCAGGCACGGCTGATTCCAATCAAGTT 719
Query 717 TCCCCTAGAACTATGCGCGGTGGCGAACAAGTTCTTGTTCTCCGCCACAGAGAAGGAACT 776
||||| | ||||| || | || | ||| ||||||| | ||| |||||||||||||
Sbjct 720 TCCCCCACAACTAAGCTC--TG-C---CAA---CTTGTTCGCAGCCGCAGAGAAGGAACT 770
Query 777 TGCATTCATATCAGCGACGGAGGACTTGATTAACGTTTATGCCCTCGAGAATGCTCTCAT 836
||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 771 AGCATTGATATCAGCGACGGAGGAATTGATTAACGTTTATGCCCTCGAGGATACTCTCAC 830
Query 837 TGATCCTAAGTGGG-CATTAGTGAAGCAAATCAAAAACGGAGTGTCGGA-AAATAAGAAA 894
||||| ||||||| | ||||||||||||||| |||||||||| ||| ||| || | |
Sbjct 831 CGATCCCAAGTGGGTC-TTAGTGAAGCAAATCCCGAACGGAGTGTTGGACAAAGAA-ACA 888
Query 895 ATTAGGTACTGGAACGTTGCGGCATACGATGGCAAGTAT-TTAGTGTTGTGGGAAATGTA 953
|| |||| ||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |
Sbjct 889 ATGAGGTGCTGGAACGTTGGGGCATACGACGGCGAGT-TCTTAGTGTTGTGGGAAATGAA 947
Query 954 CAA---GGATATA-TACAACGGAGTTGTTCATGGGTACGACTTGAGAGCTAACAAGTGGG 1009
||| ||| || ||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 948 CAACAAGGA-ATGGTACGACGGAGTTGTTCATGGCTACGACTTGAGAGCTAACAATTGGG 1006
Query 1010 GGGTCTTAGGTTCGGTTCCATCGTGGTGCGATTGTAGTCATAG-CTTTTACAACTTTACA 1068
| ||| ||||||| |||||| |||||||||| ||| ||| || ||||||| |||||| |
Sbjct 1007 GAGTCATAGGTTCTGTTCCAGAGTGGTGCGATCGTAATCA-AGTCTTTTACCACTTTAAA 1065
Query 1069 CCGTCGCCTTTCTCTTCTACGATAGAACTGAATAAGAAGGTCGACGTC 1116
||||| |||||| ||| |||||||||||||| ||||||||||||||
Sbjct 1066 CCGTC---TTTCTCCTCTGCGATAGAACTGAATGAGAAGGTCGACGTC 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5