BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20800.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472315 jgi|Araly1|472315|fgenesh2_kg.1__2269__AT1G20801.1 664 0.0
Ahg911918 jgi|Araly1|911918|Al_scaffold_0001_2172 660 0.0
> Ahg472315 jgi|Araly1|472315|fgenesh2_kg.1__2269__AT1G20801.1
Length=534
Score = 664 bits (359), Expect = 0.0
Identities = 489/549 (89%), Gaps = 20/549 (4%)
Strand=Plus/Plus
Query 1 ATGGATGGATTACCTTTTCATATCCTTGAAGAGATTCTCTTCAAATTAGATCCAAAATCT 60
|||||| ||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1 ATGGATAGATTACCTTTTCACATCCTTGAAGAGATTCTCTTCAGATTGGATCCCAAATCT 60
Query 61 CTGGCAATGATGCAATGCACGGATCGATCTATCAACTCGCATATATCCGACGATCCT-TA 119
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61 CTGGCTATGATGCAATGCACGGATCGATCTATCAACTCGCATATAACCGACGATCCGCT- 119
Query 120 TTTCAAAACTGTATGTAAGAAGGACTGTAACGACGACGGAGTGATTCATGGATACGACTT 179
||||||| |||||| |||||||||| | ||||||| |||||| ||||||| ||||||||
Sbjct 120 TTTCAAATCTGTATATAAGAAGGACCATTACGACGAGGGAGTGGTTCATGGGTACGACTT 179
Query 180 TAAAGCTACCAAGTGGGGAGTCATGGGTTGGATTCCACGGTGGTACGATGGTAAACGAGA 239
||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 180 GAAAGCTAACAAGTGGGGAGTCATGGATTGGATTCCACGGTGGTGCGATGGTAAACGAGA 239
Query 240 CCTTTGTCAGTCCAAACCGTCTTTGACGGCATCCTCTTCGATGGAACTAGATGAGAAGGA 299
| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 240 CTTTTATCAGTCCAAACCGTCTTTGAC---ATCTTCTTCGATGGAACTAGATGAGAATGT 296
Query 300 GGACGTCGACatgatgacgatggttaatgatgatgatgatgatgatAAACGTGTCTCCTC 359
||||||||||||||| | ||| ||||||||||| | | | || |||||||
Sbjct 297 GGACGTCGACATGAT-----T----AATCATGATGATGAT-A--A-A--CGAATCTCCTC 341
Query 360 TCTAAGCAAAGTTATGAGACTGATTAGTGGAATCTCACCATATGCTCAGAGCTTGTTCAA 419
|||||||||| ||| |||||| ||||| || ||||||||||||||||||||| |||||||
Sbjct 342 TCTAAGCAAAATTACGAGACTTATTAGCGGGATCTCACCATATGCTCAGAGCCTGTTCAA 401
Query 420 GAAAAAGGGAAAGATACTTGGAAAAAGATTGATGATTGAAGAAGAAACGGAATCGAATAT 479
||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 402 GAAAAAGGGAAAGCTACTTGGAAAAAGATTGATGATTGAAGAAGAAACGAAATTGAAGAT 461
Query 480 GATGATGGATGAGCCTAATTCTTCCAAGTTCCTAGACGTGGAGAGAATCAACAAAAGAAG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GATGATTGATGAGCCTAATTCTTCCAAGTTCCTAGACGTGGAGAGAATCAACAAAAGAAG 521
Query 540 ACGAGTCAA 548
| |||||||
Sbjct 522 AAGAGTCAA 530
> Ahg911918 jgi|Araly1|911918|Al_scaffold_0001_2172
Length=1356
Score = 660 bits (357), Expect = 0.0
Identities = 537/618 (87%), Gaps = 35/618 (6%)
Strand=Plus/Plus
Query 568 GATAAGAAACCGGTTTACTTTGACGGATGTATTCACTGGTTGAGAAAGGACGGGAGCATT 627
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 610 GATAAGAAACCGGTTTACTTTGACGGATCTCTTCACTGGTTGAGAAAGGACGGAAGCATT 669
Query 628 TTAGCATTT-AATCCAGAAACAGAGCAAGCACGGCTGATTCCAATCAAGTTTCCCCTAGA 686
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 670 TTAGC-TTTCAATCCAGAAACAGAGCAGGCACGGCTGATTCCAATCAAGTTTCCCCCACA 728
Query 687 ACTAAGCGCGGTGGCGAACAAGTTCTTGTTCG-AGGCCACAGAGAAGGAACTAGCATTGA 745
||||||| | | || ||| |||||||| | ||| |||||||||||||||||||||
Sbjct 729 ACTAAGCTC--T-GC---CAA---CTTGTTCGCA-GCCGCAGAGAAGGAACTAGCATTGA 778
Query 746 TATCAGCGACGGAGGAATCGATTAACGTTTATTCCCTCGAGGATATTCTTATCGATCCTA 805
|||||||||||||||||| ||||||||||||| |||||||||||| ||| | |||||| |
Sbjct 779 TATCAGCGACGGAGGAATTGATTAACGTTTATGCCCTCGAGGATACTCTCACCGATCCCA 838
Query 806 AGTGGGTCTTAGTGAAGGAAATCCAGAACGGAGTGTTGCACAAA-AAGACAATGAGGTGC 864
||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||||
Sbjct 839 AGTGGGTCTTAGTGAAGCAAATCCCGAACGGAGTGTTGGACAAAGAA-ACAATGAGGTGC 897
Query 865 TGGAACGTTGCGGCATACAACGGTAAGTGT-TTGGTGTTGTGGCAAATGAACAA---GGT 920
|||||||||| ||||||| |||| ||| | || ||||||||| |||||||||| ||
Sbjct 898 TGGAACGTTGGGGCATACGACGGCGAGT-TCTTAGTGTTGTGGGAAATGAACAACAAGGA 956
Query 921 A-GCTTGCGACGGAGATGTTTTTGGGTACGACTTGAGAGCTAACAAGTGGGAAGTCATAG 979
| | | |||||||| |||| ||| |||||||||||||||||||| |||| ||||||||
Sbjct 957 ATGGTA-CGACGGAGTTGTTCATGGCTACGACTTGAGAGCTAACAATTGGGGAGTCATAG 1015
Query 980 GTTG-GATTCCAGAGTGGTGCGATGGTTATCAAGTCTTTTACCTCTTTAAACCGTCTTTC 1038
||| | ||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1016 GTTCTG-TTCCAGAGTGGTGCGATCGTAATCAAGTCTTTTACCACTTTAAACCGTCTTTC 1074
Query 1039 TCCTCTGCGATAGAACTGAAACAAAAGGTCGACGTTGAGACGATGAATATGGTGCATGGT 1098
|||||||||||||||||||| | ||||||||||| ||||| | | | ||| ||||||
Sbjct 1075 TCCTCTGCGATAGAACTGAATGAGAAGGTCGACGTCGAGAC-A--A-T--GGTTCATGGT 1128
Query 1099 GATGATTGTAAATA----TATCTCCACTCTAAGGAAACTTATGAGCCTGATTGAGGAAAT 1154
|||||| | ||||| ||||||||||||||| ||| ||||||| |||||||| |||||
Sbjct 1129 GATGAT-GAAAATAAACGTATCTCCACTCTAAGCAAAATTATGAGACTGATTGATGAAAT 1187
Query 1155 CTCACCTTATGCTAAGAG 1172
||||||||||||||||||
Sbjct 1188 CTCACCTTATGCTAAGAG 1205
Score = 111 bits (60), Expect = 1e-23
Identities = 126/156 (81%), Gaps = 11/156 (7%)
Strand=Plus/Plus
Query 1264 GACGTGATGCGTTTTAGCAAGAAGAGAAGGTTCTTAGGCATGGAGAAAATCAACAAAAGA 1323
||||||| ||||||| |||| || | || |||||||||||||||||||||||||||||||
Sbjct 1208 GACGTGAAGCGTTTTTGCAAAAAAATAAAGTTCTTAGGCATGGAGAAAATCAACAAAAGA 1267
Query 1324 AAAAGAACCGTTAGGT-CTGC-GG-GTAGATCTGGTGTAGTAGAGGGCTTTCTGCTCTAC 1380
| ||||| || | || | || || | || || ||||| ||||| ||||| || |||||
Sbjct 1268 AGAAGAA--GTCAAGTTC-GCAGGCGGAG-TC-GGTGT--TAGAGAGCTTTGTGTTCTAC 1320
Query 1381 GTCGTT-ACGGCTCAGTATTGTCGGAACACTGGTGA 1415
| |||| |||| ||| |||| ||||| ||| |||||
Sbjct 1321 GCCGTTGACGGTTCAATATTCTCGGACCACCGGTGA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5