BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20816.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921048 jgi|Araly1|921048|scaffold_102329.1 911 0.0
> Ahg921048 jgi|Araly1|921048|scaffold_102329.1
Length=544
Score = 911 bits (493), Expect = 0.0
Identities = 527/544 (97%), Gaps = 0/544 (0%)
Strand=Plus/Plus
Query 27 GAGAAAATCTAGTGAGAAAAATGGAGACTTCTCTGAGATATGCTACTAATTCCAGGTCTC 86
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GAGAAAATCTACTGAGAAAAATGGAGACTTCTCTGAGATATGCTACCAATTCCAGGTCTC 60
Query 87 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 120
Query 147 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGATACTTTT 206
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGACACTTTT 180
Query 207 TTCATGAGGCTTCAACAAACCTTGGAGTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 266
| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TCCATGAGGCTTCAACAAGCCTTGGCCTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 240
Query 267 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAGGTTGTAACCTTTA 326
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAAGTTGTAACCTTTA 300
Query 327 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTAGTTCAGAGGAACGCAAAAGGAGCTG 386
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 301 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTTGTTCAGAGGAACGCGAAAGGAGCTG 360
Query 387 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCAGAATTG 446
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCCGAATTG 420
Query 447 GCTACGAAATGTTTGAGAAGGTACCTTATATGCAGATTAGAGAAAACAATTGGACTTTTA 506
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 421 GCTACGAAATGTTTGAGAAGGTCCCTTATATGCAGATTAGAGAAAACAATTGGACTTTCA 480
Query 507 ACACGAACTTGAAAGGAAAATGGAATGTGAGGTATGATCTGTAATGAGTAAACAAGAACA 566
|||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct 481 ACACCAACTTGAAAGGAAAATGGAATGTGAGGTTTGATCTGTAATGAATAAACAGGAACA 540
Query 567 GAAA 570
||||
Sbjct 541 GAAA 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5