BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20816.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg921048 jgi|Araly1|921048|scaffold_102329.1 911 0.0 > Ahg921048 jgi|Araly1|921048|scaffold_102329.1 Length=544 Score = 911 bits (493), Expect = 0.0 Identities = 527/544 (97%), Gaps = 0/544 (0%) Strand=Plus/Plus Query 27 GAGAAAATCTAGTGAGAAAAATGGAGACTTCTCTGAGATATGCTACTAATTCCAGGTCTC 86 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 GAGAAAATCTACTGAGAAAAATGGAGACTTCTCTGAGATATGCTACCAATTCCAGGTCTC 60 Query 87 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 120 Query 147 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGATACTTTT 206 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGACACTTTT 180 Query 207 TTCATGAGGCTTCAACAAACCTTGGAGTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 266 | |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 181 TCCATGAGGCTTCAACAAGCCTTGGCCTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 240 Query 267 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAGGTTGTAACCTTTA 326 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAAGTTGTAACCTTTA 300 Query 327 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTAGTTCAGAGGAACGCAAAAGGAGCTG 386 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 301 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTTGTTCAGAGGAACGCGAAAGGAGCTG 360 Query 387 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCAGAATTG 446 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 361 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCCGAATTG 420 Query 447 GCTACGAAATGTTTGAGAAGGTACCTTATATGCAGATTAGAGAAAACAATTGGACTTTTA 506 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 421 GCTACGAAATGTTTGAGAAGGTCCCTTATATGCAGATTAGAGAAAACAATTGGACTTTCA 480 Query 507 ACACGAACTTGAAAGGAAAATGGAATGTGAGGTATGATCTGTAATGAGTAAACAAGAACA 566 |||| |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| Sbjct 481 ACACCAACTTGAAAGGAAAATGGAATGTGAGGTTTGATCTGTAATGAATAAACAGGAACA 540 Query 567 GAAA 570 |||| Sbjct 541 GAAA 544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5