BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G20820.1

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927917 jgi|Araly1|927917|scaffold_300374.1                        134    8e-32


> Ahg927917 jgi|Araly1|927917|scaffold_300374.1
Length=217

 Score =  134 bits (72),  Expect = 8e-32
 Identities = 72/72 (100%), Gaps = 0/72 (0%)
 Strand=Plus/Minus

Query  1    GGATTCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGATTCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTC  62

Query  61   ACGTCGGGTTCA  72
            ||||||||||||
Sbjct  61   ACGTCGGGTTCA  50



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 1911046650


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5