BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20830.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472319 jgi|Araly1|472319|fgenesh2_kg.1__2273__AT1G20830.1 1796 0.0
> Ahg472319 jgi|Araly1|472319|fgenesh2_kg.1__2273__AT1G20830.1
Length=1183
Score = 1796 bits (972), Expect = 0.0
Identities = 1090/1147 (95%), Gaps = 7/1147 (1%)
Strand=Plus/Plus
Query 11 GAAATGGCATCCATTGATTCTCTCCAATTCCATTCTCTCTGCAATCTCCAGTCGTCGATT 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAATGGCATCCATTGATTCTCTCCAATTCCATTCTCTCTGCAATCTCCAGTCGTCGATT 60
Query 71 GGAAGAGCCAAGCTCCAGAATCCTTCAAGTTTGGTTATTTTCAGACGGAGACCCGTAAAT 130
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAAGAACCAAGCTCCAGATTCCTTCAAGTTTGGTTATTTTCAGACGGAGACCCGTAAAT 120
Query 131 CTGAATTGGGTTCAATTCGAAACTAAAGGAAGTTTCGTGTGTAAAGCGATTGGTGATTCC 190
||||| ||||||||||| ||||||||| |||| |||| |||||||||||||| |||||||
Sbjct 121 CTGAACTGGGTTCAATTTGAAACTAAAAGAAGGTTCGCGTGTAAAGCGATTGATGATTCC 180
Query 191 TCGACTCCAGATGAAGATATTCAGAACACTCAAAGTGATGATAATGTTGTTGTTGTTA-- 248
||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 TCGACTCCAGATGAAGAAATTCAGAACACTCAAAATGATAATAATGTTGTTGTTGTTACT 240
Query 249 -CTGCTACGACTCAGAGTGAC---ATTCCCCATGATTCCGAGTATTCAATTTCGAGGTTT 304
|||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 241 GCTGCTACGGCTCAGAGTGACATTATTCCCCATGATTCCGAGTATTCAGTTTCGAGGTTT 300
Query 305 CGAAGTATGGTTACCACACTCCCTCCTGTTGTCTTCCTGATGAAGAAGTGCTCAGTGAAC 364
|| |||||| ||||| ||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 301 CGTAGTATGATTACCTCACTCCCTCCTCTTGTCTTCGTGATGAAGAAGTGCTCAGGGAAC 360
Query 365 AGCATTTGGATTGGGGTCTGCATCACGGCTACTGTTTTGGTCGCTGCGATTAGGGCTTAT 424
||||||||||| ||| |||||||||| |||||||||||||||||||| || |||||||||
Sbjct 361 AGCATTTGGATCGGGATCTGCATCACCGCTACTGTTTTGGTCGCTGCAATCAGGGCTTAT 420
Query 425 GTAGTCAGAAAGTCAAGAGATAATCAGCGTGCTGGCTCTGTTGCTGATCTTGTGAGACGT 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAGTAAGAAAGTCAAGAGATAATCAGCGTGCTGGCTCTGTTGCTGATCTTGTGAGACGT 480
Query 485 GGCCAGCTGAGGTCTGGTGATAGAAGAGGCATCTCCAAATCTCTTAACTACGAGGACCCA 544
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GGCCAGCTGAGGTCTGGCGATAGAAGAGGCATCTCCAAGTCTCTTAACTACGAGGACCCA 540
Query 545 TTCAACAACCCTTTTGTGAAACTTGATAAAGGAAGCTCAACGGTAGAGATGTGCGGGAAA 604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TTCAACAACCCTTTTGTGAAACTTGATAAAGGAAGCTCAACTGTAGAGATGTGCGGGAAA 600
Query 605 GTTTATCGGCTAGCTCCAGTCACACTTACAGAGAAAGAACAAACTATTCATCAGAAAAGA 664
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTATATCGGCTAGCTCCAGTCACACTTACAGAGAAAGAACAAACTATTCATCAGAAAAGA 660
Query 665 AGGTCAAGAGCTTACCAATGGAAGCGACCAACGATTTTTCTCAAAGAAGGGGACTCGATA 724
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AGGTCAAGAGCTTACCAATGGAAGCGACCAACGATTTTTCTCAAAGAAGGAGACTCGATA 720
Query 725 CCACCTGATGTTGATCCCGATACAGTCAGATGGATCCCGGCCAATCATCCGTTTGCCACC 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CCACCTGATGTTGATCCCGATACAGTCAGATGGATCCCGGCCAATCATCCGTTTGCAACC 780
Query 785 ACAGTTAGCGATATCGATCAAGACCTTGCCCAGAATAATGTCTACCAGAAGCAAGGTGTT 844
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGGTTAGCGATATCGATCAAGACCTTGCCCAGAATAATGTCTACCAGAAGCAAGGTGTT 840
Query 845 CCTTTCCGGATTCGAGCTGAGCATGAAGCTATGCAGAAAAAGCTTGAAGCTTTACAAAAT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTTTCCGGATTCGAGCTGAGCATGAAGCTATGCAGAAAAAGCTTGAAGCTTTACAAAAT 900
Query 905 GAGGAGAAATTGAACAATCTGAGTATTGACAGTCAAAATGCCAGAGATTTCCAGAGGCCA 964
|| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 901 GAAGAGAAATTGAACAATCTGGGTATTGACAGTCAAAATGCCAGAGATTTTCAAAGGCCA 960
Query 965 TACAAGTTCTCAGCGAAGCTCGAAGGCGAGAATATCCAGAAGAATTCTCAGGAGAATCAT 1024
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| ||
Sbjct 961 TACAAGTTCTCAGCCAAGCTTGAAGGCGAGAATATCCAGAAAAATTCTCAGGATAATTAT 1020
Query 1025 ACAGGCAATTCATCCTCTGAGGAAACGCACAAGTCCTGAGA-CGTACTAATCTAATTGTA 1083
||||||||||||||||||||||||||| || |||||||||| |||||||| ||| |||||
Sbjct 1021 ACAGGCAATTCATCCTCTGAGGAAACGAACCAGTCCTGAGAACGTACTAAGCTACTTGTA 1080
Query 1084 AATACAGTTTTCCCTCGAGAGTCATACTTGCGTTCCAAGAAACTGGAGATTTTCTTTGTA 1143
||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 AATACGGTTTTCCCTTGAGAATCAAACTTGCGTTCCAAGAAACTGGAGATTTTCTTTGTA 1140
Query 1144 GTAGATC 1150
||| |||
Sbjct 1141 GTAAATC 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5