BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20840.1
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472320 jgi|Araly1|472320|fgenesh2_kg.1__2274__AT1G20840.1 3679 0.0
> Ahg472320 jgi|Araly1|472320|fgenesh2_kg.1__2274__AT1G20840.1
Length=2445
Score = 3679 bits (1992), Expect = 0.0
Identities = 2299/2443 (94%), Gaps = 37/2443 (2%)
Strand=Plus/Plus
Query 11 ACCCCTATTTCAACGCCTCTTTTTCTCCCTGATTTATATATCGGAGAGAT-T-TCA-AGG 67
|||||||||||||||||||||||||| ||||||||||||| | | || | | | | |
Sbjct 2 ACCCCTATTTCAACGCCTCTTTTTCT--CTGATTTATATAT-ATATATATATAT-ATA-G 56
Query 68 CAAAGCTTTCTCATTTCCTCGTAATTGCCGGCGAATTCTACTAAAGAGTTTGTTGAGCAA 127
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 57 CAAAGCTTTCTCATTTCCTCGTAATTGCCGGCGAATTCTACTAAAGGGTTGGTTGAGCAA 116
Query 128 TGAAGGGAGCGACTCTCGTTGCTCTCGCCGCCACAATCGGCAATTTCTTACAAGGATGGG 187
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 117 TGAAGGGAGCGACTCTCGTTGCTCTCGCCGCCACAATCGGCAATTTCTTGCAAGGATGGG 176
Query 188 ACAATGCCACCATTGCTGGAGCTATGGTTTATATCAACAAAGACTTGAATCTACCAACCT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACAATGCCACCATTGCTGGAGCTATGGTTTATATCAACAAAGACTTGAATCTACCAACCT 236
Query 248 CTGTTCAAGGTCTTGTCGTTGCTATGTCATTGATCGGTGCAACGGTCATCACGACTTGCT 307
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 237 CTGTTCAAGGTCTTGTGGTTGCTATGTCATTGATTGGTGCTACGGTCATCACGACTTGCT 296
Query 308 CAGGACCGATATCTGATTGGCTCGGCAGACGCCCCATGCTCATTTTATCATCAGTTATGT 367
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 297 CTGGACCGATATCTGATTGGCTCGGGAGACGCCCGATGCTCATTTTATCATCAGTAATGT 356
Query 368 ATTTCGTCTGCGGTTTGATAATGTTGTGGTCTCCCAATGTCTATGTTCTGTGCTTTGCTA 427
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 357 ATTTCGTCTGCGGTTTGATAATGCTATGGTCTCCCAATGTCTATGTTTTGTGCTTTGCTA 416
Query 428 GGCTTCTTAATGGGTTTGGTGCCGGGCTCGCGGTTACACTTGTCCCTGTTTACATTTCTG 487
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 GACTTCTGAATGGGTTTGGTGCCGGGCTCGCGGTTACGCTTGTCCCTGTTTACATTTCTG 476
Query 488 AAACCGCTCCTCCGGAGATCAGAGGACAGTTAAATACTCTCCCTCAGTTTCTTGGCTCTG 547
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAACCGCTCCTCCAGAGATCAGAGGACAGTTAAATACTCTCCCTCAGTTTCTTGGCTCTG 536
Query 548 GTGGAATGTTTTTGTCATACTGTATGGTTTTCACTATGTCCCTGAGTGACTCCCCTAGCT 607
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 537 GTGGAATGTTTTTGTCTTACTGTATGGTTTTCACTATGTCCCTGAGTGATTCGCCTAGCT 596
Query 608 GGAGAGCCATGCTCGGTGTCCTCTCGATCCCTTCTCTTCTTTATTTGTTTCTCACGGTGT 667
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAGAGCGATGCTCGGTGTCCTTTCGATCCCTTCTCTTCTTTATTTGTTTCTCACGGTGT 656
Query 668 TTTATTTGCCCGAGTCTCCTCGTTGGCTGGTTAGTAAAGGAAGAATGGACGAGGCTAAGC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTTATTTGCCCGAGTCTCCTCGTTGGCTGGTTAGTAAAGGAAGAATGGACGAGGCTAAGC 716
Query 728 GAGTTCTTCAACAGTTATGTGGCAGAGAAGATGTTACCGATGAGATGGCTTTACTAGTTG 787
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 717 GGGTTCTTCAACAGTTATGTGGCAGAGAAGATGTTACTGATGAGATGGCTCTACTAGTTG 776
Query 788 AAGGACTAGATATAGGAGGAGAAAAAACAATGGAAGATCTCTTAGTAACTTTGGAGGATC 847
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 AAGGACTAGATATCGGAGGAGAAAAAACAATGGAGGATCTCTTAGTAACTTTGGAGGATC 836
Query 848 ATGAAGGTGATGATACACTTGAAACCGTTGATGAGGATGGACAAATGCGGCTTTATGGAA 907
|||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 837 ATGAAGGTGATG---CGCTTGAAACCGTTGATGAGGACGGACAAATGCGGCTTTACGGAA 893
Query 908 CCCACGAGAATCAATCGTACCTTGCTAGACCTGTCCCAGAACAAAATAGCTCACTTGGGC 967
||||||||||||||||||| |||||||||||||||||||||| | || ||| ||||||
Sbjct 894 CCCACGAGAATCAATCGTATATTGCTAGACCTGTCCCAGAACACCAGAGTTCAGTTGGGC 953
Query 968 TACGCTCTCGCCACGGAAGCTTAGCAAACCAAAGCATGATCCTTAAAGATCCGCTCGTCA 1027
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TACGCTCTCGCCATGGAAGCTTAGCAAACCAAAGCATGATCCTTAAAGATCCGCTCGTCA 1013
Query 1028 ATCTTTTTGGCAGTCTCCACGAGAAGATGCCAGAAGCAGGCGGAAACACTCGGAGTGGGA 1087
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 ATCTATTCGGCAGTCTCCACGAGAAGATGCCAGAAGCAGGTGGAAACACTCGGAGTGGGA 1073
Query 1088 TTTTCCCTCATTTCGGAAGCATGTTCAGTACTACTGCCGATGCGCCTCACGGTAAACCGG 1147
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 TTTTTCCTCATTTTGGAAGCATGTTCAGTACTAATGCCGATGCGCCTCACGGTAAACCGG 1133
Query 1148 CTCATTGGGAAAAGGACATAGAGAGCCATTACAACAAAGACAATGATGACTATGCGACTG 1207
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1134 CTCATTGGGAAAAAGACATAGAGAGCCATTATAACAAAGACAATGATGACTATGCAACTG 1193
Query 1208 ATGATGGTGCGGGTGATGATGATGACTCGGACAACGATTTGCGTAGCCCCTTAATGTCGC 1267
|||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||||
Sbjct 1194 ATGATGGTGCGGGTGATGATGATGACTCCGATAATGATCTGCGTAGCCCATTAATGTCGC 1253
Query 1268 GCCAGACCACAAGCATGGACAAGGATATGATCCCACATCCTACAAGTGGAAGCACTTTAA 1327
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1254 GCCAGACAACGAGCATGGACAAGGATATGATCCCACATCCTACAAGCGGAAGCACTCTGA 1313
Query 1328 GCATGAGACGACACAGTACGCTTATGCAAGGCAACGGCGAAAGTAGCATGGGAATTGGTG 1387
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1314 GCATGAGACGGCACAGTACGCTTATGCAAGGCAACGGTGAAAGCAGCATGGGAATTGGTG 1373
Query 1388 GTGGTTGGCATATGGGATATAGATACGAAAACGATGAATACAAGAGGTATTATCTTAAAG 1447
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1374 GTGGTTGGCATATGGGATATAGATATGAAAACGACGAATACAAAAGGTATTATCTTAAAG 1433
Query 1448 AAGATGGAGCTGAATCTCGCCGTGGCTCGATCATCTCTATTCCCGGAGGTCCGGATGGTG 1507
| ||||| |||||||||||||||||||| ||||| ||| ||||||||||||| |||||||
Sbjct 1434 AGGATGGCGCTGAATCTCGCCGTGGCTCAATCATTTCTGTTCCCGGAGGTCCTGATGGTG 1493
Query 1508 GAGGCAGCTACATTCACGCTTCTGCCCTTGTAAGCAGATCTGTTCTTGGTCCTAAATCAG 1567
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1494 GAGGCAGCTACATTCACGCTTCTGCCCTTGTAAGCAGATCCGTTCTTGGTCCTAAATCGG 1553
Query 1568 TTCATGGATCCGCCATGGTTCCCCCGGAGAAAATTGCTGCCTCTGGACCACTCTGGTCTG 1627
| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1554 TCCATGGATCTGCCATGGTTCCCCCGGAGAAAATCGCTGGCTCTGGACCACTCTGGTCTG 1613
Query 1628 CTCTTCTTGAACCTGGTGTTAAGCGTGCCTTGGTTGTTGGTGTCGGCATTCAAATACTGC 1687
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct 1614 CTCTTCTTGAACCTGGTGTTAAGCGTGCGTTGGTCGTTGGTGTCGGCATTCAGATACTAC 1673
Query 1688 AGCAGTTTTCAGGTATCAATGGAGTTCTCTACTACACTCCTCAGATTCTCGAACGGGCTG 1747
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1674 AGCAGTTTTCGGGTATCAATGGAGTTCTCTACTACACTCCTCAGATTCTAGAACGGGCTG 1733
Query 1748 GCGTAGATATTCTTCTTTCGAGCCTCGGACTAAGTTCCATCTCTGCGTCATTCCTCATCA 1807
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1734 GCGTAGATATTCTTCTTTCGAGCCTCGGACTAAGTTCCATCTCGGCGTCATTCCTCATCA 1793
Query 1808 GCGGTTTAACAACATTACTCATGCTCCCAGCCATTGTCGTTGCCATGAGACTCATGGATG 1867
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GTGGTTTAACAACATTACTCATGCTCCCAGCCATTGTCGTTGCCATGAGACTCATGGATG 1853
Query 1868 TATCCGGAAGAAGGTCATTACTTCTCTGGACAATCCCAGTTCTCATTGTCTCACTTGTCG 1927
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1854 TTTCCGGAAGAAGGTCATTACTTCTCTGGACAATCCCAGTTCTCATCGTCTCACTTGTCG 1913
Query 1928 TCCTTGTCATCAGCGAGCTCATCCACATCAGCAAAGTCGTGAACGCAGCACTCTCCACAG 1987
|||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |
Sbjct 1914 TCCTTGTCATCAGCGAGCTCGTCCACATTAGCAAAGTCGTGAACGCAGCGCTCTCCACGG 1973
Query 1988 GTTGTGTCGTGCTCTACTTCTGCTTCTTCGTGATGGGTTACGGTCCCATTCCAAACATCC 2047
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1974 GTTGTGTCGTGCTCTACTTCTGCTTCTTCGTGATGGGCTACGGTCCGATTCCAAACATCC 2033
Query 2048 TCTGTTCTGAAATCTTCCCAACAAGAGTCCGTGGTCTCTGCATCGCCATATGTGCTATGG 2107
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2034 TCTGTTCTGAAATCTTCCCAACAAGAGTCCGTGGTCTCTGCATCGCCATTTGCGCTATGG 2093
Query 2108 TCTTTTGGATTGGAGACATTATTGTCACGTACTCACTTCCCGTTCTCCTCAGCTCGATCG 2167
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2094 TCTTTTGGATCGGAGACATTATTGTCACTTACTCACTTCCCGTTCTCCTCAGCTCGATCG 2153
Query 2168 GACTAGTTGGTGTTTTCAGCATTTACGCTGCGGTTTGCGTTATCTCATGGATCTTCGTTT 2227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GACTAGTTGGTGTTTTCAGCATTTACGCTGCGGTTTGCGTTATCTCATGGATCTTCGTTT 2213
Query 2228 ACATGAAAGTCCCGGAGACTAAAGGCATGCCTTTGGAAGTTATCACAGACTACTTTGCCT 2287
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 ACATGAAAGTCCCGGAGACCAAAGGCATGCCTTTGGAAGTTATCACAGACTACTTTGCCT 2273
Query 2288 TTGGAGCTCAAGCTCAAGC------TTCTGCTCCTTCTAAGGATATATAACTTGTAACTT 2341
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 2274 TTGGAGCTCAAGCACAAGCACAAGCTTCTGCCCCTTCTAAGGATATATAACTTGTAAC-- 2331
Query 2342 TCTTCTTCGTCAATTGCTCTGTGTACCTAAAGATTCTCTTCATCCCCtttttgttttgtt 2401
|| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 2332 -CT-----GT-----G-T------ACCTAAAGATTCTCTTCATCCCCTTTTTGTTTTGTT 2373
Query 2402 tttcagataccttcatatcgtttttgtttcttttttttttttt 2444
| ||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 2374 TCTCAGAAACCTTCATTTCGTTTTTGTTCCTTTTCTTTTTTTT 2416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94197175885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5