BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20850.1
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472321 jgi|Araly1|472321|fgenesh2_kg.1__2275__AT1G20850.1 1919 0.0
> Ahg472321 jgi|Araly1|472321|fgenesh2_kg.1__2275__AT1G20850.1
Length=1232
Score = 1919 bits (1039), Expect = 0.0
Identities = 1175/1240 (95%), Gaps = 11/1240 (1%)
Strand=Plus/Plus
Query 1 TATCAAGTGACAAAAGAAAAACAAACGTACTCAAATGGCTCTTTCTTCACCTTCAAGAAT 60
|||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 TATCAACTAACAAAAGAAAAACAAACTTACTCAAATGGCTCTCTCTTCACCTTCAAGAAT 60
Query 61 CCTCTGTTTTGCTCTTGCCTTATCCGCTGCTTCTCTCTCCCTCTCTTTCGCTTCTTCCCA 120
||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct 61 CCTCTGTTTTGCTCTTGTCTTATCCGCTGCAACTCTCTCCCTCTCTGTCGCTGCTTCCCA 120
Query 121 CGATTACTCCATCGTTGGATACTCCCCCGAGGATTTGGAATCTCATGACAAACTCATAGA 180
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 121 CGATTACTCCATCGTTGGATATTCCCCCGAGGATTTAGAATCTCATGACAAACTCATCGA 180
Query 181 ACTCTTCGAAAACTGGATCTCAAATTTTGAGAAAGCTTATGAAACCGTTGAAGAGAAGTT 240
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTTTGAGAACTGGATCTCCAATTTTGAGAAAGCTTATGAAACCGTTGAAGAGAAGTT 240
Query 241 TCTTAGGTTCGAAGTTTTCAAGGATAATCTAAAGCACATCGATGAGACTAACAAGAAAGG 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 241 GCTTAGGTTCGAAGTTTTCAAGGACAATCTGAAGCACATCGATGAGACTAACAAGAAAGT 300
Query 301 GAAAAGCTACTGGCTCGGGCTCAACGAGTTTGCGGATTTGAGCCATGAGGAGTTCAAGAA 360
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 301 GAAAAGCTACTGGCTCGGGCTCAACGAGTTTGCAGATTTGAGCCACGAAGAGTTCAAGAA 360
Query 361 AATGTATTTAGGGCTCAAGACTGATATAGTGAGACGCGATGAAGAAAGATCTTACGCAGA 420
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 361 AATGTATTTAGGGCTCAAGACTGATATAGTGAGACGAGACGAAGAAAGATCTTACGCGGA 420
Query 421 GTTCGCTTACAGGGACGTCGAAGCTGTTCCTAAGTCTGTTGACTGGAGAAAGAAAGGAGC 480
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTTCGCTTATAGGGACGTAGAAGCTGTGCCTAAGTCTGTTGACTGGAGAAAGAAAGGAGC 480
Query 481 TGTGGCGGAAGTTAAGAACCAGGGCTCTTGTGGAAGTTGTTGGGCGTTTTCGACAGTAGC 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 AGTGGCCGAAGTTAAGAACCAGGGCTCTTGTGGAAGTTGTTGGGCGTTTTCGACAGTGGC 540
Query 541 AGCTGTCGAAGGTATAAACAAGATTGTGACAGGAAACTTGACAACATTGTCAGAACAAGA 600
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 AGCAGTGGAAGGTATAAACAAGATTGTGACAGGAAACTTGACAACATTGTCTGAACAAGA 600
Query 601 ACTCATAGACTGTGACACGACCTACAACAATGGCTGCAACGGTGGTCTCATGGACTATGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTCATAGACTGTGACACGACCTACAACAATGGCTGCAACGGTGGTCTCATGGACTATGC 660
Query 661 CTTTGAGTACATTGTTAAGAACGGAGGTCTACGCAAGGAAGAAGATTATCCTTACTCTAT 720
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 661 ATTTGAGTACATTGTTAAAAATGGAGGTCTACGCAAGGAAGAGGATTATCCTTACTCTAT 720
Query 721 GGAAGAAGGAACTTGCGAGATGCAAAAGGATGAATCTGAAACAGTAACCATTAATGGACA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 GGAAGAAGGAACTTGCGAGATGCAAAAGGATGAATCTGAAACAGTAACCATTGATGGACA 780
Query 781 CCAAGACGTACCTACTAATGATGAGAAGAGTCTCTTGAAGGCATTGGCTCATCAGCCTCT 840
|||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 781 CCAAGATGTACCTACGAATGATGAGAAGAGCCTTTTGAAGGCATTGGCTCATCAGCCTCT 840
Query 841 CAGTGTCGCCATTGATGCATCTGGTAGAGAGTTCCAGTTCTATAGCGGCG---GCGTGTT 897
||||||||||||||| || ||||||||||||||||||||||| ||||||| | |||||
Sbjct 841 CAGTGTCGCCATTGACGCCTCTGGTAGAGAGTTCCAGTTCTACAGCGGCGTAAGTGTGTT 900
Query 898 TGATGGGCGGTGCGGGGTTGATCTTGACCACGGTGTGGCTGCGGTTGGGTATGGATCAAG 957
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 901 TGATGGGCGGTGCGGGGTTGACCTGGACCACGGTGTGGCTGCGGTTGGGTATGGATCAAG 960
Query 958 CAAGGGTTCAGATTACATCATTGTGAAGAATTCTTGGGGACCAAAATGGGGAGAAAAAGG 1017
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 CAAGGGTTCAGATTACATAATTGTGAAGAATTCTTGGGGACCAAAATGGGGAGAGAAAGG 1020
Query 1018 TTACATCAGGCTGAAGAGGAACACTGGGAAACCAGAGGGTCTCTGTGGAATCAACAAGAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTACATCAGGCTGAAGAGGAACACTGGGAAACCAGAGGGTCTCTGTGGAATCAACAAGAT 1080
Query 1078 GGCTTCTTTCCCCACCAAAACTAAGTGATCATCAGATCATTCTCTCTTATCTGCATTTGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGCTTCTTTCCCCACCAAAACTAAGTGATCATCAGATCATTCTCTCTTATCTGCATTTGA 1140
Query 1138 TCAGCATCTTACAGTGTCTTCGTTTTTTCTCTTTTGATTTATCAACGGAAGTCTTGTAAC 1197
||| |||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 1141 TCATCATCTTACAGTGTCTTCGTTTTTTCTCTTTTGATGTA--A--G----TCTTGTAAC 1192
Query 1198 AACTATGTGCAATAATACCTATATATAAGAAGCAGAGAAT 1237
||||||||||||||||||||||||||||| ||||||||||
Sbjct 1193 AACTATGTGCAATAATACCTATATATAAGTAGCAGAGAAT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48568596258
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5