BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20860.1 Length=1605 Score E Sequences producing significant alignments: (Bits) Value Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895 2446 0.0 Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1 889 0.0 > Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895 Length=1611 Score = 2446 bits (1324), Expect = 0.0 Identities = 1516/1608 (94%), Gaps = 15/1608 (1%) Strand=Plus/Plus Query 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGTAGCTCGAACACAATGGTACCATTTCAAA 60 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGCAGCTCGAATACAATGGTACCATTTCAAA 60 Query 61 GCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCA 120 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 61 GCGATCATAGTAGCAGGAATGGGTCTATTCACTGACGCATACGATCTTTTCTGCATCGCA 120 Query 121 CCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGACTCAATCAACACAGCCGTT 180 |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 121 CCGGTCTTGAAAATGATTAGCCATGTTTATTACAACGGTGACTCAATCAACACGGCGGTT 180 Query 181 CTTTCAACTTCTTACGCCATCGCTTTACTCGGCACAGCCACGGGTCAACTAGTCTTCGGT 240 ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 181 CTTTCGACTTCTTACGCCATCGCTCTACTCGGCACAGCCACGGGTCAACTCCTCTTCGGT 240 Query 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300 Query 301 CTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTAGCTCTTTTGGCTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360 Query 361 AGCCTCGGTTTTTTCCGGTTCT-TTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTC 419 |||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| || Sbjct 361 AGCCTCGGTTTTTTCCGGTT-TATTCTTGGTTTGGGTATCGGTGGTGATTACCCGCTTTC 419 Query 420 GGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGT 479 ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| Sbjct 420 GGCTACCATTATGTCAGAGTTTGCTAATAAGAAGACACGTGGCGCGTTTATTGCTGCGGT 479 Query 480 GTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GTTCTCCATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539 Query 540 GGCGTTTAAGAGAAGTGGCGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACGGAAGCTGA 599 |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 540 GGCGTTTAAGAGCGGTGGTGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACAGAAGCCGA 599 Query 600 CTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTG 659 | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 600 CGTGGCGTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACATTCTATTG 659 Query 660 GCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTGTAGAAAACAATATCGTCCA 719 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 660 GCGAATGCTGATGCCTGAAACCGCAAGATACACAGCACTTGTGGAAAACAATATCGTCCA 719 Query 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAAGATCTCATATCTCCGACGAAGCCACGAC 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAATATCTCATATCTCCGACGAAGCCACGAC 779 Query 780 GGATCCACCTCCTCCTCCGCC---GCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836 ||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 780 GGAGCCACCTCCTCCTCCTCCTCCGCCCCCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 839 Query 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896 ||| |||||||| |||||||||||||| |||||||||||||||||| || |||||||||| Sbjct 840 CCGTCTCCATGGCCGCGACCTCTTCGCCGCCTCCTTTAATTGGTTCTTAATAGACATTGT 899 Query 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956 |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 900 CTTCTACACAAGCAACCTCCTCCTCTCCCATATCTTCAGTCACTACTCCAACAAACCTTC 959 Query 957 --C----ACTGCAGAAAACGTCTACGACGCAGCCTTTGAAGTGGCGGAATTAGGAGCCAT 1010 | || |||||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 960 TTCCTCCACCGCAGAAAACGTCTATGATGCAGCCTTCGAAGTGGCGGAATTAGGAGCCAT 1019 Query 1011 CATCGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1070 ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CATTGCCGCTTGCTCAACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1079 Query 1071 AGGTCGTGTCAAAATCCA-GATTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCG 1129 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | Sbjct 1080 AGGTCGTGTCAAAATCCAAG-TTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTTG 1138 Query 1130 CTGGTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGG 1189 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1139 CTGGGATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCAGAATAATAAAGGCTTTATGG 1198 Query 1190 TTCTCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTA 1249 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1199 TTCTCTACGGTTTGATTTTCTTCTTTTGCAACTTTGGTCCCAACACTACAACTTTTATTA 1258 Query 1250 TTCCCGCAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCG 1309 |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1259 TTCCCGCAGAGCTTTTTCCGGCTAGGTTTAGGTCTACTTGCCACGGGATCTCTGGCGCCG 1318 Query 1310 CGGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1369 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CTGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1378 Query 1370 AAAGCGATGATAAAAACCAGATTTATCCCGAAGTAAACCGTATGAGAATTGCTTTCTTGA 1429 || ||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||| Sbjct 1379 AAGGCGATGATAAAAACCAGGTTTATACCGAAGTGAACCGTATGAGAGTTGCTTTCTTGA 1438 Query 1430 TTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCACCAAGGAAACTA 1489 |||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 1439 TTCTTGGTGGCGTTTGTATTGCCGGAATCTTTGTGACGTATTTCTTCACTAAGGAAACTA 1498 Query 1490 TGGGAAGATCGTTAGAGGAGAACGAGCATGACCAAGATAACAATGCTGAG-TCTGAAGAT 1548 ||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||| | Sbjct 1499 TGGGAAGATCGTTAGAGGAGAACGAGCATGAACAAGATAACAATGATGAGATC-GAAGTT 1557 Query 1549 GAGCCACAGATTGTTGACGGGCAATCCTCCGTGAGCACTTTGCTTCAG 1596 ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1558 GAGCCACAGATTGTTGACGGGCAATCCTCGGCCAGCACTTTGCTTCAG 1605 > Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1 Length=1749 Score = 889 bits (481), Expect = 0.0 Identities = 1195/1528 (78%), Gaps = 95/1528 (6%) Strand=Plus/Plus Query 42 ACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATA 101 ||| ||||||||||||||||| || ||||| || || ||||| || ||||||||||| || Sbjct 123 ACAGTGGTACCATTTCAAAGCCATAATAGTCGCCGGCATGGGACTTTTCACCGACGCTTA 182 Query 102 CGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGA 161 |||||||||||| ||||| ||| ||||||| ||||| ||||| | |||||| || || Sbjct 183 CGATCTTTTCTGTATAGCTCCGATCATGAAGATGATAAGTCAAATCTATTACCACAAAGA 242 Query 162 CTCAATC--AACACAGCCGTTCTTTCAACTTCTTACGCCATCGCT-TTACTCGGCACAGC 218 ||||||| ||| | || |||| |||||||||||||| |||||| || || ||||| || Sbjct 243 CTCAATCGGAAC-C-GCTATTCTCTCAACTTCTTACGCAATCGCTCTT-CTTGGCACCGC 299 Query 219 CACGGGTCAACT-AGTCTTCGGTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACG 277 ||||| || | |||| |||||| | || |||||| |||| ||||| |||||| | Sbjct 300 TTTAGGTCAGCTCA-TCTTTGGTTACTTAGGCGACCGAATCGGACGTCGTAAAGTCTATG 358 Query 278 GACTTTGTTTGATT-ATTATGATCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACC 336 |||||||| | || || ||||| ||||||| |||||||||||||| || || ||||| Sbjct 359 GACTTTGTCT-CTTAATCATGATTTTTAGCTCTTTTGGTTGTGGCTTCTCTGTTTGCACG 417 Query 337 ACTCGTCGGTCTTGTGTTATGGTTAGCCTCGG-TTTTTTCCGGTTCTTTCTTGG-TTTAG 394 ||||| || ||||| ||| ||||||| || || || ||| | ||| ||||||| || | Sbjct 418 ACTCGGCGTTCTTGCGTTTTGGTTAGTCTTGGATTCTTT-AGATTCGTTCTTGGACTT-G 475 Query 395 GTATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGA 454 | |||||||| ||||| || || || || || |||||||||||||| |||||||| |||| Sbjct 476 GAATCGGTGGAGATTATCCTCTTTCCGCCACGATTATGTCGGAGTTCGCTAATAAAAGGA 535 Query 455 CACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCT 514 | ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 536 CGCGTGGAGCTTTTATAGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCT 595 Query 515 CTGCCGTGACCATGGCTGTTTGCGTGGCGTTTAAG-A-GAAG--TG-GCGGTG-GTTTGG 568 |||| ||||| |||| ||| || |||||||||||| | | || | | || | | |||| Sbjct 596 CTGCTGTGACTATGGTTGTGTGTGTGGCGTTTAAGAACGCAGCCGGAGAGGGGAGCTTGG 655 Query 569 AG--G-TGGA--T-GC---G---G---C---GGCTCCGACGGAAGCTGACT-TGGCCTGG 609 || | | | | || | | | |||||| ||||| | || | | || ||| Sbjct 656 AGAAGACGAACGTGGCGGGGTTAGAAACTGTGGCTCCCCCGGAATCGGA-TATAGCGTGG 714 Query 610 AGACTT-ATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTT 668 || || || ||||||||||| |||||||| ||||| || ||||| || ||||||||| | Sbjct 715 AG-GTTGATTCTTATGATCGGAGCTCTTCCCGCTGCGTTAACGTTTTACTGGCGAATGCT 773 Query 669 GATGCCTGAAACCGCAAGATACACAGCACTT-GTAGAAAACAATATCGTCCAAGCAGCAA 727 |||||||||||||| |||||||||||| || || || |||||| | ||| ||||||||| Sbjct 774 CATGCCTGAAACCGCCAGATACACAGCA-TTGGTGGAGAACAATGTAGTCGAAGCAGCAA 832 Query 728 AAGACATGCAAAGAGTCATGTCAAG-ATC--TCATATCTCCGA---C-GAAGC--CA-CG 777 |||||||||||||||||||| | | ||| | ||||||| | | |||| || | Sbjct 833 AAGACATGCAAAGAGTCATGACC-GTATCCATGATATCTCAAATAGCCGAAGATTCATC- 890 Query 778 A-CGGATCCACCTCCTCCTCCGCCGCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836 | |||| | | | || ||| | | | | |||||||||||||||| ||| | ||| | Sbjct 891 ATCGGAGCTAGAACAACCACCGACTTC-C-T-CCTACAAACTCTTCTCTCGCCGTTTCCT 947 Query 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896 | ||| || || || ||||||||||||||||| ||||||||||||||| ||| | || Sbjct 948 CAACCTTCACGGCCGAGACCTCTTCGCAGCCTCAGCTAATTGGTTCCTAGTCGACGTCGT 1007 Query 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956 |||||| ||||||||||||||||| || || ||||||| | ||| ||||| |||||| | Sbjct 1008 CTTCTATACAAGCAACCTCCTCCTCTCTCAAATCTTCAAT--TTA-TCCAACAAACCTCC 1064 Query 957 CACTGC-AGAAAACGTCTACGACG-CAGCCTTTGAAGTGGCGGAAT-TAGGAGCCATCAT 1013 || | | | ||| ||||||||| | | ||||| ||||| | || | | |||||| | Sbjct 1065 CAATTCCACAAA-CGTCTACGA-GTCCGCCTTCGAAGTATCT-AAGCTCGCAGCCATTGT 1121 Query 1014 CGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGG 1073 || |||||||||||||| |||||||| |||||||| ||||| |||||||| || || || Sbjct 1122 AGCCGCTTGCTCCACCATCCCCGGTTACTGGTTCACCGTTTATTTCATCGATAAAATCGG 1181 Query 1074 TCGTGTCAAAATCCAGATTATGGGGTTTTTC-TTCATGGCCGTTATTTATTTAGTCGCTG 1132 ||| ||||| || ||||| ||||| |||||| || ||||||||| |||| |||||||||| Sbjct 1182 TCGAGTCAAGATTCAGATGATGGGTTTTTTCCTT-ATGGCCGTTGTTTACTTAGTCGCTG 1240 Query 1133 GTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGGTTC 1192 | ||||| ||||||||||||||||| ||||| ||| | | ||| |||||||| ||||||| Sbjct 1241 GGATTCCATACAGTTGGTATTGGTCTAAGCATGAGAAGACTAAAAAAGGCTTTATGGTTC 1300 Query 1193 TCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTC 1252 ||||||| ||| ||||||||||| |||| |||||||| ||||| ||||| |||||||| | Sbjct 1301 TCTACGGATTGATTTTCTTCTTTAGCAACTTTGGTCCTAACACGACAACGTTTATTAT-C 1359 Query 1253 CCG-CAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC- 1310 ||| | |||| ||| ||||| ||||||||||| || ||||||||||| ||||| || || Sbjct 1360 CCGGCGGAGCTTTTTCCGGCAAGGTTTAGGTCCACATGTCACGGGATATCTGGAGCTGCC 1419 Query 1311 GGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGA 1370 ||| ||| |||| || ||||| ||||||||||| ||||||||||| || ||| | | Sbjct 1420 GGG-AAGTTTGGTGCGATTGTTGGCACTGTTGGTTTCTTGTGGGCCAC---GAA-AC--A 1472 Query 1371 AAGCGATGATAAAA-ACCAGATTTATCCCGAAGT-AAACCGTATGAGAATTGC-TTTCTT 1427 | |||| | | || | ||| ||| || || |||| || ||||||| || ||| || Sbjct 1473 C--C-ATGA-AGAGGACG-G-TTT-TCCAGACGTGAAAC-GTGTGAGAATCGCGTTT-TT 1523 Query 1428 GATTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCAC-CAAGGAAA 1486 ||| ||||| |||||||| || |||||||| | || |||||||||||||| | | ||| Sbjct 1524 GATCCTTGGCGGCGTTTGTATAGCTGGAATGATCGTTACGTATTTCTTCACTCGTG-AAA 1582 Query 1487 CTATGGGAAGATCGTTAGAGGAGAACGA 1514 | ||||||||||| ||||| |||||||| Sbjct 1583 CGATGGGAAGATCATTAGAAGAGAACGA 1610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60144496855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5