BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20860.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895 2446 0.0
Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1 889 0.0
> Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895
Length=1611
Score = 2446 bits (1324), Expect = 0.0
Identities = 1516/1608 (94%), Gaps = 15/1608 (1%)
Strand=Plus/Plus
Query 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGTAGCTCGAACACAATGGTACCATTTCAAA 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGCAGCTCGAATACAATGGTACCATTTCAAA 60
Query 61 GCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCA 120
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 GCGATCATAGTAGCAGGAATGGGTCTATTCACTGACGCATACGATCTTTTCTGCATCGCA 120
Query 121 CCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGACTCAATCAACACAGCCGTT 180
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 121 CCGGTCTTGAAAATGATTAGCCATGTTTATTACAACGGTGACTCAATCAACACGGCGGTT 180
Query 181 CTTTCAACTTCTTACGCCATCGCTTTACTCGGCACAGCCACGGGTCAACTAGTCTTCGGT 240
||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 181 CTTTCGACTTCTTACGCCATCGCTCTACTCGGCACAGCCACGGGTCAACTCCTCTTCGGT 240
Query 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300
Query 301 CTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTAGCTCTTTTGGCTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360
Query 361 AGCCTCGGTTTTTTCCGGTTCT-TTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTC 419
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||
Sbjct 361 AGCCTCGGTTTTTTCCGGTT-TATTCTTGGTTTGGGTATCGGTGGTGATTACCCGCTTTC 419
Query 420 GGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGT 479
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 420 GGCTACCATTATGTCAGAGTTTGCTAATAAGAAGACACGTGGCGCGTTTATTGCTGCGGT 479
Query 480 GTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCTCCATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539
Query 540 GGCGTTTAAGAGAAGTGGCGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACGGAAGCTGA 599
|||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 540 GGCGTTTAAGAGCGGTGGTGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACAGAAGCCGA 599
Query 600 CTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTG 659
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CGTGGCGTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACATTCTATTG 659
Query 660 GCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTGTAGAAAACAATATCGTCCA 719
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GCGAATGCTGATGCCTGAAACCGCAAGATACACAGCACTTGTGGAAAACAATATCGTCCA 719
Query 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAAGATCTCATATCTCCGACGAAGCCACGAC 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAATATCTCATATCTCCGACGAAGCCACGAC 779
Query 780 GGATCCACCTCCTCCTCCGCC---GCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836
||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 780 GGAGCCACCTCCTCCTCCTCCTCCGCCCCCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 839
Query 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896
||| |||||||| |||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 840 CCGTCTCCATGGCCGCGACCTCTTCGCCGCCTCCTTTAATTGGTTCTTAATAGACATTGT 899
Query 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 900 CTTCTACACAAGCAACCTCCTCCTCTCCCATATCTTCAGTCACTACTCCAACAAACCTTC 959
Query 957 --C----ACTGCAGAAAACGTCTACGACGCAGCCTTTGAAGTGGCGGAATTAGGAGCCAT 1010
| || |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 960 TTCCTCCACCGCAGAAAACGTCTATGATGCAGCCTTCGAAGTGGCGGAATTAGGAGCCAT 1019
Query 1011 CATCGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1070
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATTGCCGCTTGCTCAACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1079
Query 1071 AGGTCGTGTCAAAATCCA-GATTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCG 1129
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 AGGTCGTGTCAAAATCCAAG-TTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTTG 1138
Query 1130 CTGGTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGG 1189
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1139 CTGGGATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCAGAATAATAAAGGCTTTATGG 1198
Query 1190 TTCTCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTA 1249
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 TTCTCTACGGTTTGATTTTCTTCTTTTGCAACTTTGGTCCCAACACTACAACTTTTATTA 1258
Query 1250 TTCCCGCAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCG 1309
|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1259 TTCCCGCAGAGCTTTTTCCGGCTAGGTTTAGGTCTACTTGCCACGGGATCTCTGGCGCCG 1318
Query 1310 CGGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1369
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1378
Query 1370 AAAGCGATGATAAAAACCAGATTTATCCCGAAGTAAACCGTATGAGAATTGCTTTCTTGA 1429
|| ||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1379 AAGGCGATGATAAAAACCAGGTTTATACCGAAGTGAACCGTATGAGAGTTGCTTTCTTGA 1438
Query 1430 TTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCACCAAGGAAACTA 1489
|||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1439 TTCTTGGTGGCGTTTGTATTGCCGGAATCTTTGTGACGTATTTCTTCACTAAGGAAACTA 1498
Query 1490 TGGGAAGATCGTTAGAGGAGAACGAGCATGACCAAGATAACAATGCTGAG-TCTGAAGAT 1548
||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||| |
Sbjct 1499 TGGGAAGATCGTTAGAGGAGAACGAGCATGAACAAGATAACAATGATGAGATC-GAAGTT 1557
Query 1549 GAGCCACAGATTGTTGACGGGCAATCCTCCGTGAGCACTTTGCTTCAG 1596
||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1558 GAGCCACAGATTGTTGACGGGCAATCCTCGGCCAGCACTTTGCTTCAG 1605
> Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1
Length=1749
Score = 889 bits (481), Expect = 0.0
Identities = 1195/1528 (78%), Gaps = 95/1528 (6%)
Strand=Plus/Plus
Query 42 ACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATA 101
||| ||||||||||||||||| || ||||| || || ||||| || ||||||||||| ||
Sbjct 123 ACAGTGGTACCATTTCAAAGCCATAATAGTCGCCGGCATGGGACTTTTCACCGACGCTTA 182
Query 102 CGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGA 161
|||||||||||| ||||| ||| ||||||| ||||| ||||| | |||||| || ||
Sbjct 183 CGATCTTTTCTGTATAGCTCCGATCATGAAGATGATAAGTCAAATCTATTACCACAAAGA 242
Query 162 CTCAATC--AACACAGCCGTTCTTTCAACTTCTTACGCCATCGCT-TTACTCGGCACAGC 218
||||||| ||| | || |||| |||||||||||||| |||||| || || ||||| ||
Sbjct 243 CTCAATCGGAAC-C-GCTATTCTCTCAACTTCTTACGCAATCGCTCTT-CTTGGCACCGC 299
Query 219 CACGGGTCAACT-AGTCTTCGGTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACG 277
||||| || | |||| |||||| | || |||||| |||| ||||| |||||| |
Sbjct 300 TTTAGGTCAGCTCA-TCTTTGGTTACTTAGGCGACCGAATCGGACGTCGTAAAGTCTATG 358
Query 278 GACTTTGTTTGATT-ATTATGATCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACC 336
|||||||| | || || ||||| ||||||| |||||||||||||| || || |||||
Sbjct 359 GACTTTGTCT-CTTAATCATGATTTTTAGCTCTTTTGGTTGTGGCTTCTCTGTTTGCACG 417
Query 337 ACTCGTCGGTCTTGTGTTATGGTTAGCCTCGG-TTTTTTCCGGTTCTTTCTTGG-TTTAG 394
||||| || ||||| ||| ||||||| || || || ||| | ||| ||||||| || |
Sbjct 418 ACTCGGCGTTCTTGCGTTTTGGTTAGTCTTGGATTCTTT-AGATTCGTTCTTGGACTT-G 475
Query 395 GTATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGA 454
| |||||||| ||||| || || || || || |||||||||||||| |||||||| ||||
Sbjct 476 GAATCGGTGGAGATTATCCTCTTTCCGCCACGATTATGTCGGAGTTCGCTAATAAAAGGA 535
Query 455 CACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCT 514
| ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 536 CGCGTGGAGCTTTTATAGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCT 595
Query 515 CTGCCGTGACCATGGCTGTTTGCGTGGCGTTTAAG-A-GAAG--TG-GCGGTG-GTTTGG 568
|||| ||||| |||| ||| || |||||||||||| | | || | | || | | ||||
Sbjct 596 CTGCTGTGACTATGGTTGTGTGTGTGGCGTTTAAGAACGCAGCCGGAGAGGGGAGCTTGG 655
Query 569 AG--G-TGGA--T-GC---G---G---C---GGCTCCGACGGAAGCTGACT-TGGCCTGG 609
|| | | | | || | | | |||||| ||||| | || | | || |||
Sbjct 656 AGAAGACGAACGTGGCGGGGTTAGAAACTGTGGCTCCCCCGGAATCGGA-TATAGCGTGG 714
Query 610 AGACTT-ATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTT 668
|| || || ||||||||||| |||||||| ||||| || ||||| || ||||||||| |
Sbjct 715 AG-GTTGATTCTTATGATCGGAGCTCTTCCCGCTGCGTTAACGTTTTACTGGCGAATGCT 773
Query 669 GATGCCTGAAACCGCAAGATACACAGCACTT-GTAGAAAACAATATCGTCCAAGCAGCAA 727
|||||||||||||| |||||||||||| || || || |||||| | ||| |||||||||
Sbjct 774 CATGCCTGAAACCGCCAGATACACAGCA-TTGGTGGAGAACAATGTAGTCGAAGCAGCAA 832
Query 728 AAGACATGCAAAGAGTCATGTCAAG-ATC--TCATATCTCCGA---C-GAAGC--CA-CG 777
|||||||||||||||||||| | | ||| | ||||||| | | |||| || |
Sbjct 833 AAGACATGCAAAGAGTCATGACC-GTATCCATGATATCTCAAATAGCCGAAGATTCATC- 890
Query 778 A-CGGATCCACCTCCTCCTCCGCCGCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836
| |||| | | | || ||| | | | | |||||||||||||||| ||| | ||| |
Sbjct 891 ATCGGAGCTAGAACAACCACCGACTTC-C-T-CCTACAAACTCTTCTCTCGCCGTTTCCT 947
Query 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896
| ||| || || || ||||||||||||||||| ||||||||||||||| ||| | ||
Sbjct 948 CAACCTTCACGGCCGAGACCTCTTCGCAGCCTCAGCTAATTGGTTCCTAGTCGACGTCGT 1007
Query 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956
|||||| ||||||||||||||||| || || ||||||| | ||| ||||| |||||| |
Sbjct 1008 CTTCTATACAAGCAACCTCCTCCTCTCTCAAATCTTCAAT--TTA-TCCAACAAACCTCC 1064
Query 957 CACTGC-AGAAAACGTCTACGACG-CAGCCTTTGAAGTGGCGGAAT-TAGGAGCCATCAT 1013
|| | | | ||| ||||||||| | | ||||| ||||| | || | | |||||| |
Sbjct 1065 CAATTCCACAAA-CGTCTACGA-GTCCGCCTTCGAAGTATCT-AAGCTCGCAGCCATTGT 1121
Query 1014 CGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGG 1073
|| |||||||||||||| |||||||| |||||||| ||||| |||||||| || || ||
Sbjct 1122 AGCCGCTTGCTCCACCATCCCCGGTTACTGGTTCACCGTTTATTTCATCGATAAAATCGG 1181
Query 1074 TCGTGTCAAAATCCAGATTATGGGGTTTTTC-TTCATGGCCGTTATTTATTTAGTCGCTG 1132
||| ||||| || ||||| ||||| |||||| || ||||||||| |||| ||||||||||
Sbjct 1182 TCGAGTCAAGATTCAGATGATGGGTTTTTTCCTT-ATGGCCGTTGTTTACTTAGTCGCTG 1240
Query 1133 GTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGGTTC 1192
| ||||| ||||||||||||||||| ||||| ||| | | ||| |||||||| |||||||
Sbjct 1241 GGATTCCATACAGTTGGTATTGGTCTAAGCATGAGAAGACTAAAAAAGGCTTTATGGTTC 1300
Query 1193 TCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTC 1252
||||||| ||| ||||||||||| |||| |||||||| ||||| ||||| |||||||| |
Sbjct 1301 TCTACGGATTGATTTTCTTCTTTAGCAACTTTGGTCCTAACACGACAACGTTTATTAT-C 1359
Query 1253 CCG-CAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC- 1310
||| | |||| ||| ||||| ||||||||||| || ||||||||||| ||||| || ||
Sbjct 1360 CCGGCGGAGCTTTTTCCGGCAAGGTTTAGGTCCACATGTCACGGGATATCTGGAGCTGCC 1419
Query 1311 GGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGA 1370
||| ||| |||| || ||||| ||||||||||| ||||||||||| || ||| | |
Sbjct 1420 GGG-AAGTTTGGTGCGATTGTTGGCACTGTTGGTTTCTTGTGGGCCAC---GAA-AC--A 1472
Query 1371 AAGCGATGATAAAA-ACCAGATTTATCCCGAAGT-AAACCGTATGAGAATTGC-TTTCTT 1427
| |||| | | || | ||| ||| || || |||| || ||||||| || ||| ||
Sbjct 1473 C--C-ATGA-AGAGGACG-G-TTT-TCCAGACGTGAAAC-GTGTGAGAATCGCGTTT-TT 1523
Query 1428 GATTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCAC-CAAGGAAA 1486
||| ||||| |||||||| || |||||||| | || |||||||||||||| | | |||
Sbjct 1524 GATCCTTGGCGGCGTTTGTATAGCTGGAATGATCGTTACGTATTTCTTCACTCGTG-AAA 1582
Query 1487 CTATGGGAAGATCGTTAGAGGAGAACGA 1514
| ||||||||||| ||||| ||||||||
Sbjct 1583 CGATGGGAAGATCATTAGAAGAGAACGA 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5