BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20870.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472323 jgi|Araly1|472323|fgenesh2_kg.1__2277__AT1G20870.1 2043 0.0
> Ahg472323 jgi|Araly1|472323|fgenesh2_kg.1__2277__AT1G20870.1
Length=1522
Score = 2043 bits (1106), Expect = 0.0
Identities = 1310/1410 (93%), Gaps = 8/1410 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCTGTATAGCGACGGATTATCGAGTGATCAGTATTTCTTGGTTAATTTCATCATG 60
|||||||||| |||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTCTGTGTAGCGATGGTTTATCGAGCGATCAGTATTTCTTGGTGAATTTCATCATG 60
Query 61 AGCAACTACTTGGGTCCTGATGTCTATTCTGATAACCCAAGATGTTCATCTTCTCAAAGA 120
||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 61 AGCAATTACTTGGGTCCTGATGTGTATTCGGATAACCCAAGATGTTCAGCTTCTCAAAGA 120
Query 121 TTAGCTAGAGGTTTGCCACCTTACACTTTGATGCACATTGGATCTTCCTCTCTAACTGTT 180
||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTAGCCAAAGGTTCACCACCTTACACTTTGATGCACATTGGATCTTCCTCTTTAACTGTT 180
Query 181 TCCCAGCTACAGAACTTGTACTATAATGTACTCAGAAACGCCAAGTCCAGCCTCCTTCTT 240
| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 181 GCGCAGCTGCAGAACTTGTACTATAATGTACTGAGAAACGCAAAGTCCAGCCTTGTTCTC 240
Query 241 CATCCAGACATGATTTATATGTATCTCAAGGGATATCTACCATTGGAACCAAGTGGAAAG 300
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 241 CATCCAGACATGATTTATATGTATCTCAAGGGATACCTACCTTTGGAACCAAGTGGAAAA 300
Query 301 TTTCCTCAGTTCACGCATTTTTTCCCGACGAATCTTCACCCGCAGAAAAGGTATTCCCCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTCCTCAGTTCACGCATTTTTTCCCGACGAATCTTCACCCGCAGAAAAGGTATTCCCCG 360
Query 361 AGCCACGAGATTGTGAAAGGAATTGTTGTTATTGATGATCCTGCAGTAGGGTTCATAAAC 420
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 361 AGCCATGAGATTGTGAAAGGAATTGTTGTTATTGATGATCCTGCAGTTGCATTCATAAAC 420
Query 421 AAGGAAGAACTCCAAAGGTTCAGATGCTTGTCGCGTTTGGACGACCTGAAAATCGATAGA 480
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGAGGAACTCCAAAGATTCAGATACTTGTCGCGTTTGGACGACCTGAAAATCGATAGA 480
Query 481 GTCACGTCTTTATCTCCTCGGG-T-T-AATCTGGATGAAAGCCGGGAAACTGAGCAGGAC 537
||| ||||||||||||||||| | | || |||||||||| ||||||||| |||| ||||
Sbjct 481 GTCGTGTCTTTATCTCCTCGGGGTGTGAAGCTGGATGAAATCCGGGAAACAGAGCTGGAC 540
Query 538 TGTTCAAGAAATGGTGATGCGACA---GCTAATGGAGTTGTCAC-TAACGAGGACTACAA 593
|||||||||||||| || |||||| ||||||||| |||| || |||||| ||||||||
Sbjct 541 TGTTCAAGAAATGGGGAAGCGACAACAGCTAATGGACTTGT-ACCTAACGAAGACTACAA 599
Query 594 TTCATCTGGTGAGCTTCAAGAAACGTGCAAGAGAAAGGAAGGGGAAGACGCGGTTGCTAG 653
||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 600 TTCATCTGGAGAGCTTCAAGAAACGTGCAAGAAAAATAAAGGGGAAGAAGCGGTTGCTAG 659
Query 654 TTGCGTAATCAGTGAACCAGAAAGACTTTCGGGAGACATACCAGAAAGCCAGGGAATGAA 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 660 TTGCGTAATCAGTGAACCAGAAAGACTTTCGGGAGACATACCAGAAAGTCAGGAAATGAA 719
Query 714 GCAGGACTGTTCAAGAAACGGAGAATCTGCATTCAGTGGAATTGTCTCTGACCAAGACTA 773
|||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 720 GCAGGACTGTTCAAGAAATGGAGAATCGGCATTCAATGGAATTGTCTCTGACCAAGACTA 779
Query 774 CTATTCATTTGTAAAGCTTCCAGAAACATGCAAGCGAAAGAACAAGGAAGAAGAAGCAGT 833
||||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 780 CTATTCATTTGTAGAGCCTCGAGAAACACACAAGCGAAAGAACGAGGAAGAAGAAGCAGT 839
Query 834 TACTGGTCATGCTGTTAGTGGAACGAGTAAAACCCCTGAAAGATTTCGTGAGACATACAA 893
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 TACTGGTCATGCTGTTTGTGGAACAAGTAAAACCCCTGAAAGATTTCGTGAGACATACAA 899
Query 894 GAGAAGACGGTTCAAGAACTCATCAAAAAAGGCAACAAACAAGAATGGTGAAACTCTTAT 953
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 900 GAGAAAACGGTTCAAGAACTCATCAAAAAAGGCAACAAACAAGAATGGCGAAACTCCTAT 959
Query 954 GGAAAGAGAAAAAACAGATAAGCCTATACCTTTTTCTTCGGAGATGAAGGAAAGCGATGC 1013
||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct 960 GGAAAGAGAAAAAACAGATAAGCCTATACCTGTTCCTCCTGAGATGAAGGAAAGCGATGC 1019
Query 1014 AGAACCGTCGGTTGTAACTACTGGAACAGCCAGTAAAGAAACTCTAGGATCATCTGTTGG 1073
|||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 AGAACCATCAGTTGTAACTACCGGAACAGCCAGTAAAGAAACTCTAGGAACATCTGTTGG 1079
Query 1074 TGTTGTTGACATTGGTGTCAACAAGGTTGCTTACTTTTTTCAGGTTGCTTTGCCCGGTGT 1133
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTCGTCGACATTGGTGTCAACAAAGTTGCTTACTTTTTTCAGGTTGCTTTGCCCGGTGT 1139
Query 1134 CCGCAAAGATTACGGTGAATTCAGCTGTGAGATTGAATCAGATGGAAAGGTTATACTGGA 1193
|||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 1140 CCGCAAAGATTATGGTGAATTCAGCTGCGAGATTGAATCAGATGGTAAGGTGATACTTGA 1199
Query 1194 GGGATCAACTACAAGAGGCGaaaaaaaTATCAAGAGACATTCTCGGGTGTTCGAGATGAA 1253
|||||||||||| | ||||||||||| |||||||| ||||||||||| || || |||||
Sbjct 1200 GGGATCAACTACGACAGGCGAAAAAACGATCAAGAGGCATTCTCGGGTTTTTGAAATGAA 1259
Query 1254 TATCCGGAAGCTGTGTCCGCCTGGACCATTCAAGCTGTGCTTTAACCTCCCGGGACCAGT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 AATCCGGAAGCTGTGTCCGCCTGGACCATTCAAGCTGTGCTTTAACCTCCCAGGACCAGT 1319
Query 1314 TGATCCGCGGCTATTCTCTCCTAACTTCCGATCAGATGGTATCTTCGAGGGAGTCATCAT 1373
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 TGATCCGCGGCTATTCTCTCCTAACTTCCGATCAGATGGTATCTTCGAGGCTGTCATCAT 1379
Query 1374 CCGACACAAAAACTCTTAATTAAACCGGAG 1403
| ||||||||||||||||||||||||||||
Sbjct 1380 CAGACACAAAAACTCTTAATTAAACCGGAG 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5