BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20890.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911929 jgi|Araly1|911929|Al_scaffold_0001_2183 854 0.0
Ahg476805 jgi|Araly1|476805|fgenesh2_kg.2__1935__AT1G76480.1 420 1e-116
> Ahg911929 jgi|Araly1|911929|Al_scaffold_0001_2183
Length=594
Score = 854 bits (462), Expect = 0.0
Identities = 551/595 (93%), Gaps = 2/595 (0%)
Strand=Plus/Plus
Query 120 ATGATCGATTTACGCTATAAAGAATGCTACTTGCTCATCTGTCTTATCGTCTTCATAAAT 179
||| ||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 ATGCTCGATTTACACTACAAAGAATGCTACTTTCTCATCTGTCTTCTCGTCTTCATAAAT 60
Query 180 TTTGTGACTTGTTATAGCGATGAGAGACTGTTTGGTGGAAAAACTTTATATGCTGGGAAG 239
|||||| ||||||| |||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 61 TTTGTGCCTTGTTACAGCGATGAGACACTGTTTGATGGAAAAAGTTTATATGCTGGGAAG 120
Query 240 GAACTTTGGAAAGAGACACTGCCATTGAAATCTGGATCTCGAGTTTACAAATTACAAGGG 299
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GAACTATGGAAGGAGACTCTGCCATTGAAATCTGGATCTCGAGTTTACAAATTACAAGTG 180
Query 300 CTTAAGTCGAACTCTTGGTATGAAGTCAAGATATCATACCCAGCTTCTATACCGGCTCTA 359
|| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 181 CTGAAGTCAAATTCTTGGTATGAAGTCAAGATATCGTACCCAGCTTCTATACCGGCTTTG 240
Query 360 TTTTCGCTGCAATTACTGAAGAACGGTGTAATGGGTTTGAAGGTTAACCATATGAGGAGA 419
||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TTTACGCTGCAACTACTAAAGAACGGTGTAATGGGTTTGAAGCTTAACCATATGAGGAGA 300
Query 420 TTACTAAACACTGAGAAGTTGATCTTCAAAACAGAAAGTATTGAAGAAGTTGATAACAAG 479
|| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 301 TTGCTAAACACTGAGAAGTTGATCTTCAAAACGGAAAGTCTTGAAGAAGTTGATAACAAG 360
Query 480 GAGGGATTGTATGTTTTGGTGACGGTGGAACCTGAAGGAATCGTGGCTATACCAAATGTT 539
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 361 GACGGATTTTATGTTTTGGTGACTGTGGAACCTGAAGGAATCGTGGCTATACCAAAT-TC 419
Query 540 -AAAGAAAGACCGTCCATCATTTACAACATAGTTTGTGAAGAACAGCTCTTAGGCATCCC 598
|||||| | |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CAAAGAACGGGCGTCTATCATTTATAACATAGTTTGTGAAGAACAGCTCTTAGGCATCCC 479
Query 599 TCACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTTTTGTGTCTCGTTGTCGCGTTGATTCT 658
| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 480 TTACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTGTTGTGTCTGGTGGTCGCGTTGATTCT 539
Query 659 TCCCCGGTTCCTCCCATCTTATCTTCTGATCAAAGATGTAGATCGTGATCGTTAA 713
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TCCCCGGTTTCTCCCATCTTATCTTCTAATCAAAGATGTAGATCGTGATCGTTAA 594
> Ahg476805 jgi|Araly1|476805|fgenesh2_kg.2__1935__AT1G76480.1
Length=578
Score = 420 bits (227), Expect = 1e-116
Identities = 411/500 (82%), Gaps = 12/500 (2%)
Strand=Plus/Plus
Query 159 TGTCTTATCGTCTTCATAAAT-TTTGTGACTTGTTAT-AGCGATGAGAGAC-TGTTTGGT 215
|||||| | |||||| ||||| || || |||| | | || | |||| || |||||| |
Sbjct 84 TGTCTTTTAGTCTTCGTAAATGGTT-TGCCTTG-TCTCGGCCACGAGA-ACATGTTTGAT 140
Query 216 G-GAAAAACTTTATATGCTGGGAAGGAACTT-TGGAAAGAGACACTGCCATTGAAATCTG 273
| | ||| ||||||||| |||||||||| || ||| |||||| ||| ||||| |||| |
Sbjct 141 GTG-AAAGCTTTATATGTTGGGAAGGAA-TTGTGGGGAGAGACTCTGTCATTGCAATCAG 198
Query 274 GATCTCGAGTTTACAAATTACAAGGGCTTAAGTCGAACTCTTGGTATGAAGTCAAGATAT 333
| || || |||||||| ||| |||| || ||||| || ||||| |||||||| |||||||
Sbjct 199 GTTCACGGGTTTACAAGTTAGAAGGACTAAAGTCTAATTCTTGTTATGAAGTGAAGATAT 258
Query 334 CATACCCAGCTTCTATACCGGCTCTATTTTCGCTGCAATTACTGAAGAACGGTGTAATGG 393
||||||| ||||||||||| |||| ||||||||| || |||| |||||| ||| |||||
Sbjct 259 CATACCCTGCTTCTATACCAGCTCGGTTTTCGCTGAAACTACTTAAGAACCGTGAAATGG 318
Query 394 GTTTGAAGGTTAACCATATGAGGAGATTACTAAACACTGAGAAGTTGATCTTCAAAACAG 453
| |||||| | ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 319 GATTGAAGCTAAACCAGATGAGGAGATTACTAAACACTGAGAAGTTGATGTTCAAGGTGG 378
Query 454 AAAGTATTGAAGAAGTTGATAACAAGGAGGGATTGTATGTTTTGGTGACGGTGGAACCTG 513
||||| ||||||||||| | || |||| |||||| ||||||||||||| |||||||| |
Sbjct 379 AAAGTCTTGAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGGTGACCGTGGAACCCG 438
Query 514 AAGGAATCGTGGCTATACCAAATGTT-AAAGAAAGACCGTCCATCATTTACAACATAGTT 572
| || || ||||| ||||||||| | ||||||||| | | |||||||||||| ||||||
Sbjct 439 AGGGGATTGTGGCAATACCAAAT-TCCAAAGAAAGATCTTTCATCATTTACAATATAGTT 497
Query 573 TGTGAAGAACAGCTCTTAGGCATCCCTCACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTT 632
||||||||||| ||| | ||||| ||| | ||||||||||||||||| | ||||||| |
Sbjct 498 TGTGAAGAACAACTCATGGGCATACCTTATTCAAGCTGGTCAGTGGTTATATTAGTAGCT 557
Query 633 TTGTGTCTCGTTGTCGCGTT 652
||||||||||| || |||||
Sbjct 558 TTGTGTCTCGTGGTGGCGTT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5