BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20900.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472326 jgi|Araly1|472326|fgenesh2_kg.1__2280__AT1G20900.1 2435 0.0
Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1 102 7e-21
> Ahg472326 jgi|Araly1|472326|fgenesh2_kg.1__2280__AT1G20900.1
Length=1511
Score = 2435 bits (1318), Expect = 0.0
Identities = 1451/1514 (96%), Gaps = 14/1514 (1%)
Strand=Plus/Plus
Query 1 GGACCAAAAATTTATTGCAGAGTCGCACATGAATCTCAAGCTTCTCTCTCC-tttttttC 59
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGACCAAAAATTTATTGCAGAGTCGCACATGAATCTCAAGCTTCTCTCTCCTTTTTTTTT 60
Query 60 CCATAGCACATCAGAATCGCTAAATACGACTCCTATGCAAAGAAGAAGCTACTTCTTTCT 119
||| |||||||||||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 61 CCAGAGCACATCAGAATCGCTAAATACGACTCGTATGC-AATAAGAAGCTGCTTCTTTCT 119
Query 120 CTTGCCCTAATTAATCTACCTAACTAGGGTTTCCTCTTACCTTTCATGAGAGAGATCATT 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGCCCTAATTAAGCTACCTAACTAGGGTTTCCTCTTACCTTTCATGAGAGAGATCATT 179
Query 180 TAACATAAGTCACCTTTTTTATATCTTTTGCTTCGTCTTTAATTTAGTTCTGTTCTTGGT 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAACATAAGTCACCTTTTTT-TATCTTTTGCTTCGTCTTTAATTTAGTTCTGTTCTTGGT 238
Query 240 CTGTTTCTATATTTTGTCGGCTTGCGTAACCGATCACACCTTAATGCTTTAGCTATTGTT 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 239 CTGTTTCTATATTTTGTCGGCTTGTGTAACCGATCACACCTTAATGCTTTAGCTATTGGT 298
Query 300 TCCTCAAAATCATGAGTTTTGACTTCTCGATCTGAGTTTTCTTTTTCTCTCTTTACGCTC 359
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 299 TCCTCAAAATCCTGAGTTTTGACTTCTCGATCTGAGTTTCCTTTTTCTCTCTTCACGCTC 358
Query 360 TTCTTCACCTAGCTACCAATATATGAACGAGCAGGATCAAGA-ATCGAGAAATTGATTTG 418
|||||||||||||| ||||||||||| |||| |||||||||| ||| |||||||||||||
Sbjct 359 TTCTTCACCTAGCTCCCAATATATGAGCGAGAAGGATCAAGATATCAAGAAATTGATTTG 418
Query 419 AGCTGGCGAATAAGCAGTGGTGGGATAGGGAATTAGTAGATGCGGCGGCGATGGAAGGCG 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AGCTGGCGAATAAGCAGTGGTGGGACAGGGAATTAGTAGATGCGGCGGCGATGGAAGGCG 478
Query 479 GTTACGAGCAAGGCGGTGGAGCTTCTAGATACTTCCATAACCTCTTTAGACCGGAGATTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTACGAGCAAGGCGGTGGAGCTTCTAGATACTTCCATAACCTCTTTAGACCGGAGATTC 538
Query 539 ACCACCAACAGCTTCAACCGCAGGGCGGGATCAATCTTATCGACCAGCATCATCATCAGC 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 ACCACCAACAGCTTCAACCGCAGGGTGGGATCAATCTTATCGACCAGCATCATCATCAGC 598
Query 599 ACCAGcaacatcaacaacaacaacaac--C-------GTCGGATGATTCAAGAGAATCTG 649
||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 599 ACCAGCAACATCAACAACAACAACAACAACAACAAAAGTCTGATGATTCAAGAGAATCTG 658
Query 650 ACCATTCAAACAAAGATCATCATCAACAGGGTCGACCCGATTCAGACCCGAATACATCAA 709
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCACTCAAACAAAGATCATCATCAACAGGGTCGACCCGATTCAGACCCGAATACATCAA 718
Query 710 GCTCAGCACCGGGAAAACGTCCACGTGGACGTCCACCAGGATCTAAGAACAAAGCCAAGC 769
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTCAGCACCCGGAAAACGTCCACGTGGACGTCCACCAGGATCTAAGAACAAAGCCAAGC 778
Query 770 CACCGATCATAGTAACTCGTGATAGCCCCAACGCGCTTAGATCTCACGTTCTTGAAGTAT 829
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 779 CACCGATCATAGTAACCCGCGATAGCCCCAACGCGCTTAGATCTCACGTCCTTGAGGTAT 838
Query 830 CTCCTGGAGCTGACATAGTTGAGAGTGTTTCCACGTACGCTAGGAGGAGAGGGAGAGGCG 889
| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 839 CACCTGGAGCTGATATAGTTGAGAGTGTTTCCACTTACGCAAGGAGGAGAGGGAGAGGCG 898
Query 890 TCTCCGTTTTAGGAGGAAACGGCACCGTATCTAACGTCACTCTCCGTCAGCCAGTCACTC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 TCTCCGTTTTAGGAGGAAACGGCACCGTATCTAACGTCACTCTCCGTCAGCCAGTCAATC 958
Query 950 CTGGAAATGGCGGTGGTGTGTCCGGAGGAGGAGGAGTTGTGACTTTACATGGAAGGTTTG 1009
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCGGAAATGGCGGTGGTGTGTCCGGAGGAGGAGGAGTTGTGACTTTACATGGAAGGTTTG 1018
Query 1010 AGATTCTTTCGCTAACGGGGACTGTTTTGCCACCTCCTGCACCGCCTGGTGCCGGTGGTT 1069
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 AGATTCTTTCACTAACCGGGACTGTTTTGCCACCTCCTGCACCTCCTGGTGCCGGTGGTT 1078
Query 1070 TGTCTATATTTTTAGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGCGTTGTGGCTCCCC 1129
||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1079 TGTCTATATTTCTAGCTGGAGGACAAGGTCAGGTGGTCGGAGGAAGCGTGGTGGCTCCCC 1138
Query 1130 TTATTGCATCAGCTCCGGTTATACTAATGGCGGCTTCGTTCTCAAATGCGGTTTTCGAGA 1189
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 TTATTGCATCAGCTCCGGTTATACTAATGGCTGCTTCGTTCTCAAATGCGGTTTTCGAGA 1198
Query 1190 GACTACCGATTgaggaggaggaagaagaaggtggtggtggcggaggaggaggaggaggag 1249
|||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1199 GACTACCGATTGAGGAGGAGGAGGAAGAGGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAG 1258
Query 1250 gGCCACCGCAGATGCAACAAGCTCCATCAGCATCTCCGCCGTCTGGAGTGACCGGTCAGG 1309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGCCACCGCAGATGCAGCAAGCTCCATCAGCATCTCCGCCGTCTGGAGTGACCGGTCAGG 1318
Query 1310 GACAGTTAGGAGGTAATGTGGGTGGTTATGGGTTTTCTGGTGATCCTCATTTGCTTGGAT 1369
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 GACAGTTAGGAGGTAATGTGGGTGGTTATGGGTTTTCCGGTGATCCTCATTTGCTTGGAT 1378
Query 1370 GGGGAGCTGGAACACCTTCAAGACCACCTTTTTAATTGAATTTTAATGTCCGGAAATTTA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGGGAGCTGGAACACCTTCAAGACCACCTTTTTAATTGAATTTTAATGTCCGGAAATTTA 1438
Query 1430 TGTGTTTTTATCATCTTGTGGAGTCGTCTTTCCTTTGGGATATTTGGTGTTTAATGTTTA 1489
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1439 TGTGTTTTTATCATCTTGTGGAGTCGTCTTTCTTTTGGGATCTTTGGTGTTTAAA-TTTA 1497
Query 1490 GTTGATATGCATAT 1503
||||||||||||||
Sbjct 1498 GTTGATATGCATAT 1511
> Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1
Length=1362
Score = 102 bits (55), Expect = 7e-21
Identities = 113/141 (80%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 985 GTTGTGACTTTACATGGAAGGTTTGAGATTCTTTCGCTAACGGGGACTGTTT-TGCCACC 1043
|||||||| |||| |||| ||| ||||||||||| || | ||| | |||| | || ||
Sbjct 723 GTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTC-GTTTCTTCCTCC 781
Query 1044 TCCTGCACCGCCTGGTGCCGGTGGTTTGTCTATATTT-TTAGCCGGAGGGCAAGGTCAGG 1102
||| || || || || || | ||||| | || ||| ||||||||||| ||||||||||
Sbjct 782 TCCGGCTCCTCCCGGAGCAACTAGTTTGACAAT-TTTCTTAGCCGGAGGACAAGGTCAGG 840
Query 1103 TGGTCGGAGGAAGCGTTGTGG 1123
|||||||||||||||||||||
Sbjct 841 TGGTCGGAGGAAGCGTTGTGG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5