BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20910.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472327 jgi|Araly1|472327|fgenesh2_kg.1__2281__AT1G20910.1 2324 0.0
Ahg476809 jgi|Araly1|476809|fgenesh2_kg.2__1939__AT1G76510.1 837 0.0
> Ahg472327 jgi|Araly1|472327|fgenesh2_kg.1__2281__AT1G20910.1
Length=1619
Score = 2324 bits (1258), Expect = 0.0
Identities = 1494/1602 (93%), Gaps = 39/1602 (2%)
Strand=Plus/Plus
Query 42 tcttcttcttcttcctccagcttctttcaatttctccGGCTGCTAAACCCTAGCGCGCCG 101
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 22 TCTTCTTCTTCTTCTTCCAGTTTCTTTCAATTTCTCCGGCTGCTAAACCCTAGCGCGCCG 81
Query 102 TCGGA-GTCCCTGCGTTCTCATACC-AACCTT--T--AC-TCGCCGTCGCCGTCGCTGCA 154
|||| || |||||||||| || || | || | | ||||||||||||||||||||
Sbjct 82 CCGGAGGT-CCTGCGTTCTTATCCCGTGCTTTCCTCGCCGTCGCCGTCGCCGTCGCTGCA 140
Query 155 GAACT-GAAATCGAAGCTTAAGATGGTGGATACCGAAATGCAAGAGCAAGATGTGACTTT 213
||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAACTCGGAATTGAAGCATAAGATGGTGGATACCGAAATGCAAGAGCAAGATGTGACTTT 200
Query 214 TGGTGC---------CCTTGTTGAGACAAAGTATTTAGAGGAAGAACCTTTGGAGCCAGA 264
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TGGTGCTGAGGATGTCCTTGTTGAGACAAAGTATTTAGAGGAAGAACCTTTGGAGCCAGA 260
Query 265 AAATGATCACAACCCTAGTGAAATCCCGCAGCCCCTTCTTCTTGGAGATGGTCAGGCTAA 324
|||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 261 AAATTATCAGAACCCTAGTGAAATCCCTCAGCCCCTTGTTCTTGGAGATGGTCAGGCTAA 320
Query 325 TAATGGTCATGGCATGAATGGTGGTGCTGTTGGAGTTGTTGACCACTCTGAAAGGAAGAC 384
|||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 321 TAATGGTCATGGGATGAATGGT-G-G-TGTTGGAGTTGTTGACCACTCTGAAAGGAAGAC 377
Query 385 TCGTAGGGTGCAAATGTTGAGTCCTAAGACTGAAGGTGAGAATGCCAAAAAGAGGAAGAC 444
||||| ||||||||||||||||||||||||||||| ||| || |||||||||||||| |
Sbjct 378 TCGTAAGGTGCAAATGTTGAGTCCTAAGACTGAAGTTGAAAACACCAAAAAGAGGAAGTC 437
Query 445 TTGGCTGCTGGATTCTGAGGCACAGGGAACTGATGAAGCAGGGACACCGGTAGAACAAGT 504
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 438 TTGGCTGCTGGATTCTGAGGCACAGGGAGTTGATGAAGCAGGGACACCAGTAGAACAAGT 497
Query 505 GGCGTTTCTAAGAGAAGTGGAGGCCTTTTACAAAGAGAGTTTCCTGGAATTTAAACCTCC 564
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 498 GACGTTTCTAAGAGAAGTGGAGGCCTTTTACAAAGAGAATTTCCTGGAATTTAAACCTCC 557
Query 565 TAAGTTTTATGGACAGCCTTTAAACATTCTCAAGCTTTGGCGAGCAGTCGTGAACCTAGG 624
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 558 TAAGTTTTATGGACAGCCTTTAAACATTCTCAAGCTTTGGCGAGCAGTCGTTAAACTAGG 617
Query 625 TGGCTATGAAGTGGTCACCACAAATAAGCTGTGGCGGCAAGTTGGAGAATCCTTCAATCC 684
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 618 TGGCTATGAAGTGGTCACCACAAATAAGCTATGGCGGCAAGTTGGAGAATCCTTCCATCC 677
Query 685 TCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTTCTATGAGAAGGCACTTTT 744
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 678 TCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTTCTACGAGAAGGCACTTTT 737
Query 745 GGAGTACGAAAAGTGTTTAAGGAATAATGGTGAGCTTAACCTTCCTGGTTCAACATTGAT 804
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 GGAGTACGAAAAGTGTTTAAGGAAAAATGGTGAGCTTAACCTTCCTGGTTCAACATTGCC 797
Query 805 TCTGTCTTCCAGTGTCGAGAAAGAGCCAAGTAGCCATCAAGGTTCAGGGTCAGGCAGGGC 864
|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 798 TCTGTCTTCCAGCCTCGAGAAAGAGGCAAGTAGCCATCAAGGTCCAGGGTCAGGCAGGGC 857
Query 865 ACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGCCTTGTTGGATC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGCCTTGTTGGATC 917
Query 925 TGGAGAGGTTACTGCGCCTGCTGTTAAGGATAAGGGCTTAATTTCCACCCCAAAGCACAA 984
|||||||| ||||||||| | |||||||||||||||||||| || ||||||||||| ||
Sbjct 918 TGGAGAGGGTACTGCGCCAGTTGTTAAGGATAAGGGCTTAAACTCAACCCCAAAGCATAA 977
Query 985 GAAACTCAAAAGCATTGGGCTGCAAAAACACAAACAACAAACTAGCATGGACCATGTTGT 1044
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 978 GAAACTCAAAAGCATTGGGCTGCAAAAACACAAACCACAAACTAGCATGGACCTTTTTGT 1037
Query 1045 TACAAATGAAGCTGACAAACAGTTGGCTGCTGAGGTTGTTGATGTTGGACCCGTTGCTGA 1104
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1038 TTCAAATGAAGCTGACAAACAGTCGGCTGCTGAGGTTGTTGATGTTGGACCCCTTGCTGA 1097
Query 1105 CTGGGTGAAGATAAATGTCAAAGAATCTAAGGATTCCTTCGAGATATTTGCCTTGGTACC 1164
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1098 CTGGGTGAAGATAAATGTCAAAGAAACTAAGGATTCCTTCGAGATATTTGCCTTGGTACC 1157
Query 1165 TGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGCGGGAAAGGTGGTTATAAC 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGCGGGAAAGGTGGTTATAAC 1217
Query 1225 AGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGGATTACACCCTTCAAAAAGATTGTTGA 1284
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1218 AGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGCATTACACCCTTCAAAAAGATTGTTGA 1277
Query 1285 CTTATCAGCAAGAATTGATCCGCTTCACACATCCGCGGTCATGAGCATGCATGGACGGTT 1344
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 1278 CTTATCAGCAAGAATCGATCCGCTTAACACATCTGCGGTCATGAGCATGCATGGCCGGTT 1337
Query 1345 GTTCATACGAGTTCCGTTTGAGCAGTAATGGATTTCAAGAG--AGCTGGTCAGTTGTTCG 1402
|||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||
Sbjct 1338 GTTCATACGAGTTCCGTTTGAGCAGTGATGGATGTCAAGAGTGAGCTGGTCATTTGTTCT 1397
Query 1403 TGGTTTCTTCTAGGAATTCAT-AT--GTTTCAGAACCAAATTGTTAGGCGGCTGAAGCAG 1459
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1398 TGGTTTCTTCTAGGAATTCATCATATGTTTCAGAACCAAATTGTTAGGCGGCTGAAGCAG 1457
Query 1460 TTTTGTAACTGTGATTTGAATCTGAAGACTGAAGTTAGGAACATGCAA-CAAACATTTGA 1518
||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1458 TTTTGTAACTGTGATCTGAGTCTGAAGACTGAAGTTAGGGACATGCAAACAAACATTTGA 1517
Query 1519 TCTTACTGTAATATTTCTCTTTTGTATAATTTGAGATTAGTAGGAGAAACTGCTCCAAA- 1577
||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1518 TCTTACTGTAAGATTTGTCTTTTGTAAAATTTGAGATTAGTAGGAGAAACTGCTCCAAAT 1577
Query 1578 ----G---A---C-ATTTAGGATGCAACCAACAATGATGATT 1608
| | | ||||||||||||||||||||||||||||
Sbjct 1578 CTTAGTTTAAATCCATTTAGGATGCAACCAACAATGATGATT 1619
> Ahg476809 jgi|Araly1|476809|fgenesh2_kg.2__1939__AT1G76510.1
Length=1667
Score = 837 bits (453), Expect = 0.0
Identities = 847/1032 (82%), Gaps = 47/1032 (5%)
Strand=Plus/Plus
Query 434 AAGAGGAAGACTTGGCTGCT--G-GATTCTGAGGCACAGGGAA-CTGATGAAGCAGGGAC 489
||| ||||||| ||| || | | ||||||||||| ||||||| |||||||||||||||
Sbjct 562 AAGTGGAAGACATGGTTGTTGAGTGATTCTGAGGC-CAGGGAAGTTGATGAAGCAGGGAC 620
Query 490 ACCGGTAGAACAAGTGGCGTTT-CTAAGAGAAGTGGAGGCCTTTTACAAAGAGAGTTTCC 548
||| || |||| ||||||| ||| ||||||||||||||| |||| |||| |||||
Sbjct 621 ACCACCGGATCAAGAGGCGTTTATTAA-AGAAGTGGAGGCCTTCCACAAGGAGAATTTCC 679
Query 549 TGGAATTTAAA-CCTCCTAAGTTTTATGGACAGCCTTTAAACAT-TCTCAAGCTTTGGCG 606
| ||||||||| || || ||||||||||||||||| ||||| | ||||||||| ||| |
Sbjct 680 TTGAATTTAAAGCC-CCAAAGTTTTATGGACAGCCCTTAAA-TTGTCTCAAGCTATGGAG 737
Query 607 AGCAGTCGTGAACCTAGGTGGCTATGAAGTGGTCACCACAAATAAGCTGTGGCGGCAAGT 666
||| ||| | || |||||||||| || |||||||||||| |||||| |||||||||||
Sbjct 738 AGCCGTCATCAAGTTAGGTGGCTACGACGTGGTCACCACATCTAAGCTATGGCGGCAAGT 797
Query 667 TGGAGAATCCTTCAATCCTCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTT 726
||||||||||||| ||||||| || |||||||| |||||||||| |||||||||| |||
Sbjct 798 TGGAGAATCCTTCCATCCTCCAAAAACATGCACTACAGTCTCCTGGACATTCCGCATTTT 857
Query 727 CTATGAGAAGGCACTTTTGGAGTACGAAAAGTGTTTAAGG-AATAATGGTGAGCTTAACC 785
|||||| ||||||||||||||||| || |||| ||||||| || ||||||||||||||||
Sbjct 858 CTATGAAAAGGCACTTTTGGAGTATGAGAAGTATTTAAGGCAA-AATGGTGAGCTTAACC 916
Query 786 TTCCTGGTTCAACATT-GATTCTGTCTTCCA-GTGTCGAGAAA-GAGCCAAGTAGCCATC 842
||||||||||| | || ||| ||||| || | | || ||| ||| ||| ||||||||
Sbjct 917 TTCCTGGTTCAGC-TTCTCTTCCGTCTT-CAGGCCTTGA-AAAGGAGGCAACTAGCCATC 973
Query 843 AAGGTTCAGGGTCAGGCAGGGCACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGC 902
||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 974 AAGCTTCAGGGTCAGGCAGAGCACGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGC 1033
Query 903 ATGCGCAGCGCCTTGTTGGATCTGGAGAGGTTACTGCGCCTGCTGTTAAGGATAAGGGCT 962
|| | ||||||||| |||||||||| |||||||||| |||| |||||||||||| ||||
Sbjct 1034 ATTCTCAGCGCCTTCTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGATAAAGGCT 1093
Query 963 T-AATTTCCACCCCAAAGCACAAGAAAC-TCAAAAGCATTGG-GCTGCAAAAACACAA-A 1018
| |||| | ||||||||||| || |||| |||||| |||||| | |||| ||||| || |
Sbjct 1094 TGAATT-CAACCCCAAAGCAAAA-AAACCTCAAAAACATTGGTG-TGCAGAAACAAAAGA 1150
Query 1019 CAACAAACTAGCATGGACCATGTTGTTACAAATGAAGCTGACAAACAGTTGGCTGCTGAG 1078
||||| | ||||||||| |||| || || ||||| | || ||||||| |||| |||
Sbjct 1151 CAACACCCG-GCATGGACCTTGTTTTTTCACATGAATCAGAAAAACAGTCAACTGCCGAG 1209
Query 1079 GTTGTTGATGTTGGACCCGTTGCTGACTGGGTGAAGATAAATGTCAAAGAATCTAAGGAT 1138
||| | |||||||||||| ||| |||||||||||||||||||||| |||| |||| ||
Sbjct 1210 GTTATAGATGTTGGACCCCCTGCAGACTGGGTGAAGATAAATGTCAGAGAAACTAAAGAC 1269
Query 1139 TCCTTCGAGATATTTGCCTTGGTACCTGGACTTCTTCGCAAAGAGGTTCGAATTCAATCA 1198
| ||| |||||||||||| | |||||||||||||||||| ||||||| || |||| |||
Sbjct 1270 TGCTTTGAGATATTTGCCCTAGTACCTGGACTTCTTCGCGAAGAGGTCCGCGTTCAGTCA 1329
Query 1199 GATCCTGC-GGGAAAGG-TGGTTATAACAGGCCAGCCAGAGCAGCTTGACAATCCTTGGG 1256
|| ||||| ||| || | |||||| ||||||| || ||||| ||||||||||| ||||
Sbjct 1330 GACCCTGCAGGGC--GGCTAGTTATAGCAGGCCAACCTGAGCAACTTGACAATCCATGGG 1387
Query 1257 GGATTACACCCTTCAAAAAGATTGTTGA-CTTATC-AGCAAGAATTGATCCGCTTCACAC 1314
| || ||||||||||||||| |||| || ||| || ||||||||| ||||| ||||||||
Sbjct 1388 GAATCACACCCTTCAAAAAGGTTGT-GAACTT-TCCAGCAAGAATCGATCCACTTCACAC 1445
Query 1315 ATCCGCGGTCATGAGCATGCATGGACGGTTGTTCATACGAGTTCCGTTTGAGCAGTAAT- 1373
|| ||||| ||||| | ||||| || |||| | ||||| || |||||||||| |
Sbjct 1446 GTCAGCGGTTGTGAGCCTACATGGTCGACTGTTTGTGCGAGTCCCATTTGAGCAGTGACC 1505
Query 1374 GGAT-T--TC--AAGAGAGCTGGT-CAGTTGTTCGTGGTTTCTTCTAGGAATTCATATGT 1427
|| | | || ||| ||||| || | || || || |||||| ||||||||| | |||
Sbjct 1506 GG-TCTCATCCCAAGTGAGCTTGTTCT-TTATT--TG-TTTCTTTTAGGAATTCGTTTGT 1560
Query 1428 TTCAGAACCAAA 1439
||||||| |||
Sbjct 1561 ATCAGAACTAAA 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5