BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20925.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313001 jgi|Araly1|313001|fgenesh1_pm.C_scaffold_1001781 1929 0.0
Ahg927049 jgi|Araly1|927049|scaffold_202610.1 414 7e-115
> Ahg313001 jgi|Araly1|313001|fgenesh1_pm.C_scaffold_1001781
Length=1161
Score = 1929 bits (1044), Expect = 0.0
Identities = 1123/1162 (97%), Gaps = 2/1162 (0%)
Strand=Plus/Plus
Query 259 ATGAGGATGAGGCTTTTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTG 318
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGATGAGACTTCTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTG 60
Query 319 TTGATAACAGGAATTGGATTTTACTTGGCTCTTGATCAAGTTAACATTCTCAATCACGAT 378
|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 61 TTGATAACAGGAATCGGATTTTACTTGGCTCTAGATCAAGTTAACATTCTGAATCAAGAC 120
Query 379 GCAAGAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCTCTTGTTGCAAGC 438
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCTAGAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCACTTGTTGCAAGC 180
Query 439 AGTTTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCACTTAAT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGTTTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCGCTTAAT 240
Query 499 GTTTTGCTAACATTCATCATTGGTTCGTTT-TTGGGTTGGATTGTTATCAAAATCACTAA 557
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 GTTTTGCTAACATTCATCATTGGTTCGTTTCTT-GGTTGGATTGTTATCAAAATCACTAA 299
Query 558 ACCTCCTTCGCATCTCCGTGGCATCATCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACCTCCTTCGCATCTCCGTGGCATCATCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAA 359
Query 618 TATGCCACTCATTATCATCCCAGCTATATGTAATGAAAAGGGAAGTCCTTTTGGAGATCC 677
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 360 TATGCCACTCATTATCATCCCAGCTATTTGTAAAGAAAAGGGAAGTCCTTTTGGAGATCC 419
Query 678 TGAGTCTTGTGAGAAATTTGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCAT 737
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAGTCTTGTGAGAAATATGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCAT 479
Query 738 TTACATATGGACTTATGTATACAATCTTATGCGGATGCTAGCAAATCCTGCTGGAGAAAC 797
|||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 480 TTACATATGGACGTACGTATACAATCTTATGCGGATGCTAGCTAATCCTGGTGGAGAAAC 539
Query 798 CGCAATAAACAGTACCTCGTCTACAATGCCACTGATTTCTCCCAAAGTCGAAGTTGCGGA 857
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 CGCGATAAACAGTACCTCATCTACAATGCCACTGATTTCTCCCAAAGTCGAAGTTGGGGA 599
Query 858 ACAGGTTGGGACTTGGGGCAAGGTCAAACAAAGAGTGTGCTCTGTAGCAGAGAAAATCAA 917
||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 600 GCAGGTTGGGACTTGGAGCAAGGTCAAGCAAAGAGTGTCCTCGGTAGCAGAGAAAATCAA 659
Query 918 TCTACGAACAATATTTGCTCCTTCAACTATTGCAGCGCTTATCGCGCTTGCGGTTGGGTT 977
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TCTACGAACAATATTTGCTCCTTCAACCATTGCAGCGCTTATCGCGCTTGCGGTTGGGTT 719
Query 978 AAATCCTTTACTACGGAAGCTACTAGTCGGTAACACAGCTCCACTTCGAGTGATTGAGGA 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATCCTTTACTACGGAAGCTACTAGTCGGTAACACAGCTCCACTTCGAGTGATTGAGGA 779
Query 1038 CTCAGTATCTCTATTGGGGGACGGGGCGATTCCTGTTCTGACTCTGATTGTTGGAGGAAA 1097
||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 780 CTCTGTATCTCTATTGGGGGATGGGGCGATTCCTGTTCTGACTCTCATTGTAGGAGGAAA 839
Query 1098 CCTTCTCAATGGTCTGAGAGGTTCAGGAATAAACAAGTCAGTCATAATGGGTGTGGTGGT 1157
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CCTTCTCAATGGTCTGAGAGGTTCAGGAATGAACAAGTCAGTCATAATGGGTGTGGTGGT 899
Query 1158 TGTGCGTTACTTGTTGCTGCCAATATTAGGAGTTTTCATAGTACGAGGAGCGCATTACTT 1217
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TGTGCGTTACTTGTTGCTGCCAATATTAGGCGTTTTCATAGTACGAGGAGCGCATTACTT 959
Query 1218 GGGTTTGGTTACATCCGAACCGCTTTACCAGTTTGTTCTTCTGCTTCAGTATGTCGTTCC 1277
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGGTTTGGTTACATCTGAACCGCTTTACCAGTTTGTTCTTCTGCTTCAGTATGTCGTTCC 1019
Query 1278 CCCAGCGATGAATCTTGGTACAATCACTCAACTATTCGGATCAGGAGAAAGTGAATGCTC 1337
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCCAGCAATGAATCTTGGTACAATCACTCAACTATTCGGATCAGGAGAAAGTGAATGCTC 1079
Query 1338 TGTGATTCTATTCTGGAGTTATGCCTTGGCTTCAGTTTCTCTCACTGTCTGGCCAACATT 1397
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTGATTCTCTTCTGGAGTTATGTCTTGGCTTCAGTTTCTCTCACTGTCTGGCCAACATT 1139
Query 1398 CTTCATGTGGCTCGTAGCCTGA 1419
||||||||||||||||||||||
Sbjct 1140 CTTCATGTGGCTCGTAGCCTGA 1161
> Ahg927049 jgi|Araly1|927049|scaffold_202610.1
Length=1218
Score = 414 bits (224), Expect = 7e-115
Identities = 424/520 (82%), Gaps = 16/520 (3%)
Strand=Plus/Plus
Query 266 TGAGGCTTTTGGATCTGTTCATAACCTCATCGATACCAGTTGCGAAGATTCTGTTGATAA 325
||| ||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||||
Sbjct 27 TGAAGCTTTTGGAGCTGTTCATAACTTCATCGAAACCAGTTGTGGAGATTCTGTTGATAA 86
Query 326 CAGGAATTGGATTTTACT-TGGCTCTTGATCAAGT-T-AA-CATTCTCAATCACGATGCA 381
|| | |||||||| | |||||||||| | || | || | |||| ||| |||||
Sbjct 87 CATCTGTCGGATTTTA-TATGGCTCTTGA-C-GGTGTCAATC-TTCTTGGTCATGATGCT 142
Query 382 AGAAAACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCTCTTGTTGCAAG-CAG 440
| ||| | | ||||| || || |||||||||||| ||||||| ||| ||| ||| | |
Sbjct 143 CGCAAATATTTGAACAACATTGTCTTCTATGTGTTTGGTCCTTCGCTTATTGGAAGTC-G 201
Query 441 TTTATCTGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCACTTAATGT 500
|||| |||| | | ||||||| |||||| |||| ||||||||||| ||||| |||||||
Sbjct 202 TTTAGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGTTTATGCCGGTTAATGT 261
Query 501 TTTGCTAACATTCATCATTGGTTCGTTTTTGGGTTGGATTGTTATCAAAATCACTAAACC 560
| || | |||||||||||||||||||| || || ||||||||||| |||||||| ||
Sbjct 262 TCTGTTGACATTCATCATTGGTTCGTTATTAGGCTGGATTGTTATTGTCATCACTAAGCC 321
Query 561 TCCTTCGCATCTCCGTGG-CATCA-TCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAAT 618
|||||| ||||| ||||| | ||| || ||||||||||||||||||||||||||||||||
Sbjct 322 TCCTTCACATCTTCGTGGTC-TCATTC-TTGGTTGTTGTGCTGCTGGGAATTTGGGGAAT 379
Query 619 ATGCCACTCATTATCATCCCAGCTATATGTAATGAAAAGGGAAGTCCTTTTGGAGATCCT 678
|||||||| ||||| |||||||| | ||||| ||||| ||| |||| |||||||||||
Sbjct 380 ATGCCACTGATTATAATCCCAGCCGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCA 439
Query 679 GAGTCTTGTGAGAAATTTGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCATT 738
||| ||| |||||| |||| | || ||| |||| ||||| ||||| || ||| | |||
Sbjct 440 GAGAGTTGCCAGAAATATGGAATGGGCTATGTTGCTCTCTCCATGGCAATGGGATCGATT 499
Query 739 TACATATGGACTTATGTATACAATCTTATGCG-GATGCTA 777
|||||||||||||| ||||||||||| ||||| | |||||
Sbjct 500 TACATATGGACTTACGTATACAATCTAATGCGTG-TGCTA 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5