BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20930.1
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472331 jgi|Araly1|472331|fgenesh2_kg.1__2285__AT1G20930.1 1927 0.0
> Ahg472331 jgi|Araly1|472331|fgenesh2_kg.1__2285__AT1G20930.1
Length=1154
Score = 1927 bits (1043), Expect = 0.0
Identities = 1117/1154 (97%), Gaps = 0/1154 (0%)
Strand=Plus/Plus
Query 57 AGAGTTGTCTTGAGAGATTGATAGAGATGGACAACAATGGAGTTAAACCCGCTGTTTCCG 116
|||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 AGAGTTTTCTTAAGAGATTGATAGAGATGGACAACAATGGAGTCAAACCTGCTGTTTCCG 60
Query 117 CCATGGAAGCCTTTGAAAAGCTTGAGAAAGTAGGTGAAGGGACTTATGGGAAAGTTTACA 176
||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 61 CCATGGAAGCCTTCGAGAAGCTTGAGAAAGTAGGTGAAGGTACTTACGGGAAAGTTTACA 120
Query 177 GAGCAAGAGAGAAAGCTACTGGGATGATCGTTGCTTTGAAGAAGACGCGTCTCCATGAGG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGCAAGAGAGAAAGCTACTGGGATGATCGTTGCTTTGAAGAAGACGCGTCTCCATGAGG 180
Query 237 ATGAAGAAGGTGTTCCTCCCACTACTCTTCGCGAGATCTCTATCTTGCGTATGCTCGCTC 296
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ATGAAGAAGGTGTTCCTCCCACTACTCTTCGCGAGATCTCTATCTTGCGCATGCTCGCTC 240
Query 297 GTGATCCTCACATCGTTAGGTTGATGGATGTTAAGCAAGGAATAAACAAAGAAGGAAAAA 356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GTGATCCTCACATCGTTAGGTTGATGGATGTTAAGCAAGGAATTAACAAAGAAGGAAAAA 300
Query 357 CTGTACTTTACCTTGTTTTCGAGTATGTTGATACTGATCTCAAGAAATTCATCAGAAGCT 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CTGTACTTTACCTTGTTTTCGAGTATGTTGACACTGATCTCAAGAAATTCATCAGAAGCT 360
Query 417 TTCGTCAAGCTGGACAGAACATTCCACAAAATACTGTCAAGTGCTTGATGTACCAGTTAT 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 TTCGTCAAGCTGGACAGAACATTCCACAGAATACTGTCAAGTGCTTGATGTACCAGTTAT 420
Query 477 GCAAAGGCATGGCTTTTTGCCATGGTCATGGAGTGTTGCACAGGGATCTTAAGCCTCACA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GCAAAGGCATGGCTTTTTGCCATGGTCATGGAGTGTTGCACAGGGATCTTAAGCCGCACA 480
Query 537 ATCTCTTGATGGACCGGAAGACAATGACGCTCAAAATAGCAGATCTTGGATTAGCCAGAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 ATCTCTTGATGGACCGGAAGACAATGACGCTCAAAATAGCAGATCTTGGATTAGCTAGAG 540
Query 597 CCTTCACTCTCCCAATGAAAAAGTATACACATGAGATTCTAACTCTATGGTATAGAGCTC 656
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 541 CCTTCACTCTCCCAATGAAAAAGTACACACATGAGATTCTAACTCTGTGGTATAGAGCTC 600
Query 657 CGGAAGTTCTTCTTGGAGCAACCCATTACTCTACTGGAGTGGATATGTGGTCTGTTGGCT 716
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 601 CGGAAGTTCTTCTTGGAGCAACCCATTACTCAACTGCAGTGGATATGTGGTCTGTTGGCT 660
Query 717 GTATTTTTGCTGAACTAGTGACCAAGCAAGCAATCTTTGCGGGAGACTCTGAGCTCCAAC 776
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 661 GCATTTTTGCTGAACTAGTGACCAAGTAAGCAATCTTTGCGGGAGACTCTGAACTCCAAC 720
Query 777 AGCTCCTCCGTATATTCAGGTTGTTGGGAACACCAAACGAAGAAGTTTGGCCTGGAGTAA 836
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 AGCTCCTCCGTATTTTCAGGTTGTTGGGAACACCAAACGAAGAAGTGTGGCCTGGAGTAA 780
Query 837 GCAAACTCAAGGACTGGCATGAATACCCGCAATGGAAACCGTTGAGTCTCTCCACAGCTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAAACTCAAGGACTGGCATGAATACCCGCAATGGAAACCGTTGAGTCTCTCCACAGCTG 840
Query 897 TGCCAAACCTCGACGAGGCTGGACTTGATCTCTTATCTAAAATGCTGGAGTACGAGCCAG 956
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 TGCCAAACCTCGACAAGGCCGGAGTTGATCTCTTATCTAAAATGCTGGAGTACGAGCCAG 900
Query 957 CAAAACGAATCTCAGCAAAGAAAGCTATGGAGCATCCTTACTTCGATGATTTGCCTGACA 1016
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 901 CAAAACGAATCTCAGCAAAGAAAGCTATGGAGCATCCTTACTTTGATGATTTACCTGACA 960
Query 1017 AGTCCTCTCTCTGAGGCTCTCTTTATAAACTCTCAATAGGATATTTTGTTCTATCTCTGT 1076
||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 961 AGTCCTCTCTCTGAGACTCTCTTTATCAACTCTCAGTAGGATATTTTGTTCCATCTCTGT 1020
Query 1077 CTTTGCTTGTCTCAAGCATTTATCTGCTATCTTAGGATGATTGAAGTTTCAATATTCCCT 1136
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 CCTTGCTTGTCTCAAGCATTTATCTGCTATCTTAGGATGATCGAAGTTTCAATATTCCCT 1080
Query 1137 TTTGATTGGGTCTCTATTCCCAATTGTATAACCTTCCAACATTTTTATCAATGAAAGAAT 1196
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TTTGATTGGGTCTCTATTCCCAATTGTATAACCTTCCAACATTTTTAACAATGAAAGAAT 1140
Query 1197 ATATCAGTTTCTCT 1210
|||||| || ||||
Sbjct 1141 ATATCAATTGCTCT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45328148313
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5