BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20940.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911935 jgi|Araly1|911935|Al_scaffold_0001_2189 843 0.0
Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1 342 3e-93
> Ahg911935 jgi|Araly1|911935|Al_scaffold_0001_2189
Length=1035
Score = 843 bits (456), Expect = 0.0
Identities = 573/629 (91%), Gaps = 10/629 (2%)
Strand=Plus/Plus
Query 622 TGGAGATTATCGGAAACGAGTATCACCACTAGCTCAAAAAGTGATCTCACTACGCGGATG 681
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 412 TGGAGATTGTCGGAAACGACAATCACCACTAGCTCAAAAAGTGATCTCACAACGCGAATG 471
Query 682 AAACCTGTTTACTTGGACAACACTCTTCACTGGCTGAGAAACGATGGCAGCATCATGTCT 741
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| | |||
Sbjct 472 AAACCTGCTTACTTGGACAACACTCTTCACTGGTTGAGAAACGATGGGAGCATTGTATCT 531
Query 742 TTTAATCCCGAGACAGAGCAAGCATGCTTGATTCCTTCCATATTTCATCGGGAACCGGAT 801
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 532 TTTAATCCCGAGACAGAGCGAGCATGTTTGATTCCTTCCATATTTCATCGGGAACCGGAT 591
Query 802 ACGAAGCTACTTTTCGCGGAAAGCGTTAAGATCAATCGCCTGACCCTAATTTCGGGGACG 861
|| || ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 592 ACTAAACTACTTTTCGCGGAAAGCGTTAAAATCAATCGTCTGACCTTAATTTCGGGGACG 651
Query 862 ATAGAAACAATCTCCGTTTACACACTTGTCGAGAATCACAAATGGACACTCACAAGGCGG 921
||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 652 ATAGAAACAATATCCGTTTACACACTTCTCGGGAATCACAAATGGGCACTCACAAGGCGG 711
Query 922 ATCAAGAACATATCTATCGAGGAAGAA-ACGCTTGTATATTGGAACATAGCTATGTACGA 980
|||||||||||||||||||| ||| || ||||||| || ||||||||||| | ||||||
Sbjct 712 ATCAAGAACATATCTATCGATGAA-AACACGCTTGAATGTTGGAACATAGTTGCGTACGA 770
Query 981 TGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGATGGGTTTAGAACCTTTGGCAA-GTGTTC 1039
|||||||||||||||||||||||||||||||| ||| |||||| |||| | || ||||
Sbjct 771 TGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGAGGGGATTAGAATCTTTTG-AAGGTGTGA 829
Query 1040 TTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTTGGTGTCAACC-CT-TGCTTG 1097
|||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||
Sbjct 830 TTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTTGGGGTCAACCACTAT--TTG 887
Query 1098 GCCCAATTGCGTCCGAGATTTCTATAAATTGACGCCCTCCTTGTTCTTTGTAGAGGAGGA 1157
| ||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 888 GGCCAGTTGCGTCCGAGATTTTTATAAATTTACGCCTTCCTTGTTCTTTGTAGAGGAGGA 947
Query 1158 TGAGCAACAGAAGGTGCTTGTTGCTTCTAATGACCGACGCATCTCCTATATAAATT-CGA 1216
||||||||||| ||||||||| |||||| |||||| ||||||||||||| ||| || | |
Sbjct 948 TGAGCAACAGATGGTGCTTGTAGCTTCTGATGACCAACGCATCTCCTATCTAA-TTGCCA 1006
Query 1217 TTATGGGACTCATTGATACCACCAAGTAA 1245
|||||||||||||||||||||||||||||
Sbjct 1007 TTATGGGACTCATTGATACCACCAAGTAA 1035
Score = 448 bits (242), Expect = 6e-125
Identities = 369/426 (87%), Gaps = 25/426 (6%)
Strand=Plus/Plus
Query 106 ATGGCTATGATGCGATGCACTAACAATTCTATCAAATCATATTTAAGTGATCCAAGATTT 165
||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGATGATGCGATGCACGAACAAATCTATCAAATCGTATTTAAGTGATCCAAGATTT 60
Query 166 GGACCGGAATATCCTTCATGGGTCAGACCTAGTTTGTTTAACCTTGGTAGCTATGGCGCT 225
||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 61 GGACCTGAATATCCTTCATGGGTCAGATCTAGTTTGTTTAACGTTAGTAGCTATGGCGC- 119
Query 226 A-CTTATGTATGTTGCCATCCTTTGGTCTCTTCATGCGATTATATGTCACCGGGAAATGG 284
| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 AGTTTATGTATACTGCCAACCTTTGGTCTCTTCATGCGGTTATATGTCACCGGGAAATGA 179
Query 285 AGTAGAACTGTTTGATGGTAGTGCGGATTGTTACATTTTCGGCTCATGCTCTGGTCTTCT 344
|||||| ||| || | || | || || |||||| ||||||| |||||||| ||||||||
Sbjct 180 AGTAGAGCTGATT-A--GT-GAGC-GA-TGTTACTTTTTCGGTTCATGCTCCGGTCTTCT 233
Query 345 CCTATTGTACATTGGTTGTCTCTTTGTTGCAAATCCCTTAACAAAAAGGTTTCGAATCCT 404
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 CCTATTGTACATCGGTTGCCTCTTTGTCGCAAATCCCTTAACAAAAAGGTTTCGAATCCT 293
Query 405 GGATCATTCTGGATCAAAGCTTATACC-AATGATAGTTAATGGTGGACTTAAAGGTCTTA 463
|||||| |||||||||||||||||||| || ||||||| ||||| | || | | |
Sbjct 294 GGATCACTCTGGATCAAAGCTTATACCTAA-GATAGTT---GGTGG--T-AATGAT---A 343
Query 464 GCGGAATTAGTTATCCTGGAGGTAATGTTGCTTGTACGGAACGAGCGATGTGCGTTGGAT 523
| | |||||||||| |||||| ||||| |||| ||| ||||||||||||||||||
Sbjct 344 ----A-T-AGTTATCCTGAAGGTAACATTGCTCGTACAGAAAGAGCGATGTGCGTTGGAT 397
Query 524 TTGCGG 529
||||||
Sbjct 398 TTGCGG 403
> Ahg472254 jgi|Araly1|472254|fgenesh2_kg.1__2208__AT1G20240.1
Length=1674
Score = 342 bits (185), Expect = 3e-93
Identities = 589/772 (76%), Gaps = 76/772 (10%)
Strand=Plus/Plus
Query 511 ATGTGCGTTGGATTTGCGGTAAATCGAAATCTAACAACCAAGAGATTCAAGATCGTGGGC 570
||||| ||||| ||||||||||||||||||| ||| || | ||||||||||||||| ||
Sbjct 1 ATGTGTGTTGGTTTTGCGGTAAATCGAAATCGAACCACTATGAGATTCAAGATCGTTTGC 60
Query 571 ATACTCGAGATGGAAAAC-GTATACGGATTCGAGATCAACGAAGGAGACTCTTGGAGATT 629
||||||||||| | |||| || ||| ||||||||||| ||| ||| | || ||||||||
Sbjct 61 ATACTCGAGAT-GCAAACGGTCTACAAATTCGAGATCAGCGACGGATATTCATGGAGATT 119
Query 630 ATCGGAAACGAGTATCACCACTAGCTCAAAAAGTGATCTCACT-ACGCGGATGAAACCTG 688
||||||||||| |||||| ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 120 ATCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCA-TGACGCGAATGAAACCTG 178
Query 689 TTTACTTGGACAACACTCTTCACTGGCTGAGAAACGATGGCAGCATCAT-GTCTTTTAAT 747
|||||||||||||||||||||| ||| ||||||| ||||| |||||||| | ||||||||
Sbjct 179 TTTACTTGGACAACACTCTTCATTGGTTGAGAAATGATGGGAGCATCATAG-CTTTTAAT 237
Query 748 CCCGAGACAGAGCAAGCATGCTTGATTCCTTCCATATTTCA--T-CGG-GA-ACC----- 797
|||||||||||||||||| | ||||||||||||| ||| || | || || |
Sbjct 238 CCCGAGACAGAGCAAGCACGATTGATTCCTTCCAGATT-CAGATTCGATGATAATTATAT 296
Query 798 GG--ATACGAAGCTACT-TTTCGCGG-AAAGCGTTAAGAT--CAATCGCCTGACCCTAAT 851
|| ||| || | | | ||| || | ||| || ||||| ||| |||||||| | ||
Sbjct 297 GGTCATAA-AACC-ATTATTT-GCAGCAAA-CG--AAGATATCAACCGCCTGACTTTGAT 350
Query 852 TTCGG-GGACGATAGAAACAATCTCCGTTTACACACTTGTCGAGAATCACAAA-TGGACA 909
|| || ||||| ||| |||||| ||||||||||| || || || | || ||| |
Sbjct 351 ATCAATGG-CGATAAAAAGAATCTCAGTTTACACACTACTCCAGGATT-CGAAGTGGGCT 408
Query 910 CTCAC-AAGGCGGATCAAGAACATATCTATCG-AG-GAAGAAACGCTTGTATATT-GGAA 965
||| | ||| ||||||||| ||||||||| || | ||||| | | || || | |||
Sbjct 409 CTCGCCAAG-CGGATCAAGTACATATCTA-CGGACAGAAGAGA-GATTATAGCCTCGGAT 465
Query 966 CATAGCTATGTACGATGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGATGGGTTTAGAACC 1025
| | | |||||||||||||||||||||| ||||| || |||| | || ||
Sbjct 466 G-TGGTTGCGTACGATGGCAAGTGTCTTGTGTTGAGGCAGATGAAGAAAGAC---GATCC 521
Query 1026 T--TTGGC-AAGTGTTCTTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTT-GG 1081
| |||| |||||| |||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 522 TCATTGGAGAAGTGTGGTTCATGTGTACGACATGGAAGCTAACTGTTGGAGAGGGCTAGG 581
Query 1082 TGTCA-ACC-CTTGCT-TGGCCCAATTGCGTCCGA-GATTTCTATAA-ATTGACGCCCTC 1136
| || | | | | || | | | ||||| | || || ||||| ||| ||||||||
Sbjct 582 GGCCATATGTCA-G-TATG-CT-A-T--CGTCC-ACGACTTGTATAAGATT-ACGCCCTC 632
Query 1137 CTTGTTCTTTGT--A-GAGGAGGATGAGCAA-CAGAAGGT-GCTTGTTGCTTCTAATGAC 1191
||||||||||| | ||||| |||||| || || ||||| | |||| || |||||| ||
Sbjct 633 TTTGTTCTTTGTCGAAGAGGATGATGAG-AAGCAAAAGGTAG-TTGTAGCATCTAATCAC 690
Query 1192 CGACGCATCT-CCTATATAAATTCGATTATGGGA-CTCATTGATACCACCAA 1241
| || ||| | |||| | | || || ||||| | |||||||||||||||
Sbjct 691 CAACACATGTACCTA-ACC--T-CGGTTTTGGGAGC-CATTGATACCACCAA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5