BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20950.1
Length=2152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472333 jgi|Araly1|472333|fgenesh2_kg.1__2287__AT1G20950.1 3384 0.0
Ahg476813 jgi|Araly1|476813|fgenesh2_kg.2__1943__AT1G76550.1 2002 0.0
Ahg890188 jgi|Araly1|890188|Al_scaffold_0007_2174 265 1e-69
> Ahg472333 jgi|Araly1|472333|fgenesh2_kg.1__2287__AT1G20950.1
Length=2138
Score = 3384 bits (1832), Expect = 0.0
Identities = 2055/2159 (95%), Gaps = 29/2159 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaGTCACACTCGAAGTCTCACACCACACCAACCActtcttcttcttcttcttctt 60
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATAGTCACACTCAAAGTCTCACACCACACCAACCACTTCTTCTTCTTCTTCTTCTT 60
Query 61 ctACATAAAACCTAACGCCATGGATTCAGATTTCGGAATCCCCAGAGAACTCTCCCCTCT 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CTACATAAAACCTAACGCCATGGATTCAGATTTTGGAATCCCCAGAGAACTCTCCCCTCT 120
Query 121 TCAGCAACTTCGATCTCAGTACAAACCTGAGCTTCCTCCTTGTCTCCAGGGGACTACTGT 180
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGCAACTTCGATCTCAGTACCACCCTGAGCTTCCTCCTTGTCTCCAGGGGACTACTGT 180
Query 181 CCGCGTGGAGCTTGGTGATGGAACCACTGTGGCTGAAGCTGCTGATTCACATACCATGGC 240
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 181 CCGCGTAGAGCTTGGTGATGGAACCACTGTGGCTGAGGCTGCTGATTCACACACCATGGC 240
Query 241 TCGTGCTTTCCCGCATACCTTAGGCCAGCCTTTGGCTCACTTCCTCAGGGAAACTGCTCA 300
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TCGCGCTTTCCCGCATACCTTAGGCCAGCCTTTGGCTCACTTCCTTAGGGAAACTGCTCA 300
Query 301 AGTTCCTGATGCGCACATCATTACCGAGCTTCCTTCAGTTAGAGTTGGAATTGTGTTTTG 360
|||| ||||||| ||||||||| | |||||||| |||||| ||||||||||||| |||||
Sbjct 301 AGTTGCTGATGCTCACATCATTTCTGAGCTTCCATCAGTTCGAGTTGGAATTGTATTTTG 360
Query 361 TGGAAGGCAAGCTCCAGGTGGACATAATGTGATCTGGGGTCTTTTCGAGGCTCTCAAGGT 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 TGGAAGGCAAGCTCCAGGTGGACATAATGTGATCTGGGGTCTTTTTGAGGCTCTCAAAGT 420
Query 421 GCACAACGCAAAAAGCACTTTGCTAGGATTTTTGGGTGGTTCCG-AGGGTCTATTTGCAC 479
|||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct 421 TCACAACACAAAAAGCACTTTGCTAGGCTTTTTGGGTGGTTCCGAAGGG-CTATTTGCAC 479
Query 480 AAAAGACTCTAGAGATTACAGATGATATACTTCAGACTTACAAAAACCAAGGTGGTTATG 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAAGACTCTGGAGATTACAGATGATATACTTCAGACTTACAAAAACCAAGGTGGTTATG 539
Query 540 ATTTGCTCGGAAGAACTAAGGATCAGATCAAAACAACTGAGCAGGTTAACGCTGCACTCA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 ATTTGCTCGGAAGAACTAAGGATCAGATCAAAACAACTGAGCAGGTGAACGCTGCACTCA 599
Query 600 AAGCTTGCACAGATTTGAAGTTAGATGGCCTTGTTATCATTGGAGGCGTAATATCAAACA 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATCTTGCACAGATTTGAAGTTAGATGGCCTTGTTATCATTGGAGGCGTAATATCAAACA 659
Query 660 CAGATGCAGCTCATCTCGCTGAATTTTTTGCTGCTGCAAAATGCTCAACTAAGGTGGTTG 719
||||||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||
Sbjct 660 CAGATGCAGCTCATCTCGCTGAATTTTTTGCGGCAGCAAAATGCCCAACTAAGGTAGTTG 719
Query 720 GTGTTCCAGTTACTACAAATGGAGATCTCAAAAATCAGTTTGTGGAGGCAAACGTGGGTT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GTGTTCCAGTTACTACAAATGGAGATCTCAAAAATCAGTTTGTGGAGGCAAATGTGGGTT 779
Query 780 TTGACACCATATGCAAGGTGAACTCACAACTCATTAGCAATGCCTGCACTGATGCCCTTT 839
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 780 TTGACACCATATGCAAGGTGAATTCACAGCTCATTAGCAATGCCTGCACTGATGCCCTTT 839
Query 840 CTGCAGAGAAGTATTATTATTTCATCCGCCTCATGGGTCGTAAGCACTCTCATGTTGCCC 899
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 CTGCAGAGAAGTATTATTATTTCATCCGTCTCATGGGTCGTAAGCACTCTCATGTTGCCC 899
Query 900 TTGAGTGTACACTCCAGTCTCATCCAAACATGGTGATACTGGGCGAGGAGGTTGCAGCAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 TTGAGTGTACACTCCAGTCTCATCCAAACATGGTGATACTGGGCGAGGAGGTTTCAGCAT 959
Query 960 CTAAGCTCACAATTTTTGACATTGCTAAA-CAGATCTGTGATGCTGTTCAAGCAAGAGCA 1018
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 960 CTAAGCTCACAATTTTTGACATTGC-AAATCAGATCTGTGATGCTGTTCAAGCAAGAGCA 1018
Query 1019 GTAGAAGACAAGAATCATGGAGTCATCCTCATTCCTGAAGGGCTTATAGTCAGTATTCCT 1078
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1019 GTAGAAGACAAGAATCATGGAGTCATTCTCATTCCTGAAGGGCTTATAGTGAGTATTCCT 1078
Query 1079 GAAGTCTACGCTCTGTTAAAGGAAATTCACGGGCTGCTGAGGCAGGGTGTATCTGCTGAT 1138
||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1079 GAAGTCTACGCTCTGTTAAAGGAAATTCATGGGCTGCTAAGGCAGGGTGTAGCTGCTGAT 1138
Query 1139 AAGATTTCTACTCAGCTCTCACCTTGGTCATCTGCTTTGTTTGAATTTCTTCCTCCATTC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGATTTCTACTCAGCTCTCACCTTGGTCATCTGCTTTGTTTGAATTTCTTCCTCCATTT 1198
Query 1199 ATTAAGAAACAGCTACTTCTCCATCCTGAGTCTGATGATTCTGCTCAGCTATCCCAGATT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATTAAGAAACAGCTACTTCTCCATCCTGAGTCTGATGATTCTGCTCAGCTATCCCAGATT 1258
Query 1259 GAGACAGAGAAACTTCTTGCGTATCTCGTGGAGACTGAAATGAACAAGCGCTTGAAAGAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAGACAGAGAAACTTCTTGCGTATCTCGTGGAGACTGAAATGAACAAGCGCTTGAAAGAA 1318
Query 1319 GGCACATACAAGGGGAAGAAATTCAATGCCATATGTCACTTTTTTGGTTACCAAGCTCGT 1378
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 GGGACATACAAGGGGAAGAAATTCAATGCCATATGTCACTTTTTTGGCTACCAAGCTCGT 1378
Query 1379 GGATCTCTTCCATCGAAATTCGATTGTGATTACGCCTACGTTCTTGGACATATATGTTAC 1438
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1379 GGATCTCTTCCATCGAAATTTGATTGTGATTATGCCTATGTTCTTGGACATATATGTTAT 1438
Query 1439 CACATCCTTGCAGCTGGTCTGAATGGTTACATGGCAACAGTGACCAACCTAAAAAGTCCT 1498
||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1439 CACGCCCTCGCAGCTGGTCTGAATGGTTACATGGCAACTGTAACCAACCTAAAAAGTCCT 1498
Query 1499 GTGAACAAGTGGAAATGTGGTGCTACACCTATTACAGCGATGATGACGGTGAAGCATTGG 1558
|| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1499 GTAAACAAGTGGAAATGTGGTGCTGCACCTATTACAGCGATGATGTCAGTGAAGCATTGG 1558
Query 1559 TCCCAGGATGCTAGTTATACTTTAACTTCAATTGGTAGACCTGCAATTCATCCAGCTATG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCCCAGGATGCTAGTTATACTTTAACTTCAATTGGTAGACCTGCAATTCATCCAGCTATG 1618
Query 1619 GTGGATTTGAAAGGCAAAGCATACGACCTCTTGAGACAGAATGCACAAAAATTCTTGATG 1678
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1619 GTGGATTTGAAAGGCAAAGCATACGACCTTTTAAGACAGAATGCACAAAAATTCTTGATG 1678
Query 1679 GAAGATCTGTACAGAAACCCAGGACCGCTACAGTACGATGGTCCTGGTGCGGATGCTAAA 1738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1679 GAAGATCTGTACAGAAACCCAGGACCGCTTCAGTACGATGGTCCTGGTGCGGATGCTAAA 1738
Query 1739 GCAGTGAGTCTCTGTGTTGAAGATCAAGATTACATGGGACGTATCAAGAAGCTGCAGGAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GCAGTGAGTCTCTGTGTTGAAGATCAAGATTACATGGGACGTATCAAGAAGCTGCAGGAA 1798
Query 1799 TATCTTGACCAAGTGAGGACGATAGTGAAACCAGGATGTTCTCAAGACGTATTGAAGGCA 1858
||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TATCTAGACCAGGTGAGGAAGATAGTGAAACCAGGATGTTCTCAAGACGTATTGAAGGCA 1858
Query 1859 GCACTGAGTGTGATGGCTTCGGTGACTGATGTTCTTACTACTATTTCTTCAAATGGTGGT 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1859 GCACTGAGTGTGATGGCTTCGGTGACTGATGTTCTTACTACTATTTCTTCAACTGGTGGG 1918
Query 1919 CAATGATTTGCTTAAAACTTA-AGGA-CAAAGCTCTTATGAATCACACACGTCGtgttt- 1975
||||||||||||||||||||| | | |||| ||||| | |||| |||||||||| |||
Sbjct 1919 CAATGATTTGCTTAAAACTTATATAATCAAAACTCTTTTTAATCCCACACGTCGTATTTC 1978
Query 1976 --gttctcttctttttgttttctttcttttgagatgtaacttttgttgt-attttttaag 2032
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1979 TTGTTCTCTTCTTTTTGTCTTCTTTCTTTTGAGATGTAACTTTTGTTGTTATTTTTTAAG 2038
Query 2033 ttattgagtttgGAAAGACATAAAAATTGAAAAGGTTTGGATTATAGAGGCGCTATTTCA 2092
|| ||||||||||||||| ||||||| | | |||||||||||||||||||||||||
Sbjct 2039 TTGTTGAGTTTGGAAAGATATAAAAA--G----G-TTTGGATTATAGAGGCGCTATTTCA 2091
Query 2093 CCATATCAATCCTTGTCCAACTTTTATTTTTCAGTTTCACTATTATTACAAACtttttt 2151
||||| |||||| || |||||||||||| | |||||||||||||||||||
Sbjct 2092 CCATACCAATCCA---CC---TTTTATTTTTCA----C--TATTATTACAAACTTTTTT 2138
> Ahg476813 jgi|Araly1|476813|fgenesh2_kg.2__1943__AT1G76550.1
Length=2074
Score = 2002 bits (1084), Expect = 0.0
Identities = 1594/1839 (87%), Gaps = 40/1839 (2%)
Strand=Plus/Plus
Query 78 CCATGGATTCAGATTTCGGAATCCCCAGAGAACTCTCCCCTCTTCAGCAACTTCGATCTC 137
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 63 CCATGGATTCAGATTTCGGAATCCCCAGAGAACTCTCTCCTCTTCAACAACTCCGATCTC 122
Query 138 AGTACAAACCTGAGCTTCCTCCTTGTCTCCAGGGGACTACTGTCCGCGTGGAGCTTGGTG 197
||||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 123 AGTACCACCCTGAGCTTCCTCCTTGTCTCCAGGGGACTACTGTTCGTGTGGAGCTTGGTG 182
Query 198 ATGGAACCACTGTGGCTGAA-GCTGCTGATTCACATACCATGGCTCGTGCTTTCCCGCAT 256
|||||||||||||||| || |||| |||| | |||| ||| || ||||| ||||| |||
Sbjct 183 ATGGAACCACTGTGGC-AAAGGCTGGTGATGCTCATATCATTGCCCGTGCCTTCCCACAT 241
Query 257 AC-CTTAGGCCAGCCTTTGGCTCACTTCCTCAGGGAAACTGCTCAAGTTCCTGATGCGCA 315
|| ||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||
Sbjct 242 ACTCTT-GGCCAGCCTTTGGCTCACTTCCTGAGGGCAACTGCTAAAGTTCCTGATGCTCA 300
Query 316 CATCATTACCGAGCTTCCTTCAGTTAGAGTTGGAATTGTGTTTTGTGGAAGGCAAGCTCC 375
|||||||| || | ||| || || |||||||||||||||| |||||| || |||||
Sbjct 301 GATCATTACTGAACATCCAGCAAAGAGGGTTGGAATTGTGTTTTCTGGAAGACAGGCTCC 360
Query 376 AGGTGGACATAATGTGA-TCTGGGGTCTTT-TCGAGGCTCTCAAGGTGCACAACGC-AAA 432
||||| || ||||| | | |||||||||| | ||||||||||| ||||||||||| ||
Sbjct 361 TGGTGGGCACAATGT-AGTTTGGGGTCTTTAT-GAGGCTCTCAAAGTGCACAACGCGAAG 418
Query 433 AAGCACTTTGCTAGGATTTTTGGGTGGTTCCGAGGGTCTATTTGCACAAAAGACTCTAGA 492
|| ||||||||| ||||||||||||||||| || ||||||||||| || ||||| || ||
Sbjct 419 AA-CACTTTGCTTGGATTTTTGGGTGGTTCTGAAGGTCTATTTGCCCAGAAGACCCTGGA 477
Query 493 GATTACAGATGATATACTTCAGACTTACAAAAACCAAGGTGGTTATGATTTGCTCGGAAG 552
||| || |||||| | ||||| ||||||||||| |||||||| |||||| |||| |||||
Sbjct 478 GATCACTGATGATGTCCTTCAAACTTACAAAAATCAAGGTGGCTATGATATGCTTGGAAG 537
Query 553 AACTAAGGATCAGATCAAAACAACTGAGCAGGTTAACGCTGCACTCAAAGCTTGCACAGA 612
||| ||||||||||| | |||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 538 AACCAAGGATCAGATTAGAACAACCGAGCAGGTCAATGCTGCACTTAAAGCTTGCACGGA 597
Query 613 TTTGAAGTTAGATGGCCTT-GTTATCATTGGAGGCGTAATATCAAACACAGATGCAGCTC 671
|||||| || ||||| ||| |||||||||||||| |||| ||||||||||||||| || |
Sbjct 598 TTTGAAATTGGATGG-CTTAGTTATCATTGGAGGTGTAACATCAAACACAGATGCCGCCC 656
Query 672 ATCTCGCTGAATTTTTTGCTGCTGCAAAATGCTCAACTAAGGTGGTTGGTGTTCCAGTTA 731
|||| |||||||||||||||| ||||||||| |||| ||||| ||||||||||| || |
Sbjct 657 ATCTTGCTGAATTTTTTGCTGAAGCAAAATGCCCAACAAAGGTAGTTGGTGTTCCGGTCA 716
Query 732 CTACAAATGGAGATCTCAAAAATCAGTTTGTGGAGGCAAACGTGGGTTTTGACACCA-TA 790
||| ||||||||||| || |||||||||||||| ||||| || ||||| || || | |
Sbjct 717 CTATTAATGGAGATCTTAAGAATCAGTTTGTGGAAGCAAATGTTGGTTTCGATACTACT- 775
Query 791 TGCAAGGTGAACTCACAACTCATTAGCAATGCCTGCACTGATGCCCTTTCTGCAGAGAAG 850
||||||||||| || || |||||||||||| |||||| ||||||||||| |||||||||
Sbjct 776 TGCAAGGTGAATTCTCAGCTCATTAGCAATATCTGCACCGATGCCCTTTCAGCAGAGAAG 835
Query 851 TATTATTATTTCATCCGCCTCATGGGTCGTAAGCACTCTCATGTTGCCCTTGAGTGTACA 910
|||||||| ||| |||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 836 TATTATTACTTCGTCCGTCTCATGGGTCGGAAGCATTCACATGTTGCCCTTGAGTGTACA 895
Query 911 CTCCAGTCTCATCCAAACATGGTGATACTGGGCGAGGAGGTTGCAGCATCTAAGCTCACA 970
|| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 896 CTTCAGTCTCATCCCAACATGGTTATACTGGGTGAGGAGGTTACAGCATCTAAGCTCACA 955
Query 971 ATTTTTGACATTGC-T-AAACAGATCTGTGATGCTGTTCAAGCAAGAGCAGTAGAAGACA 1028
|| ||||||| | | | ||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 956 ATATTTGACA-T-CATAAAACAAATTTGTGATGCTGTTCAAGCAAGAGCAGAACAAGACA 1013
Query 1029 AGAATCATGGAGTCATCCTCATTCCTGAAGGGCTTATAGTCAGTATTCCTGAAGTCTACG 1088
| ||||||||||||||||| ||||||||||||||| | | |||||||||||| |||| |
Sbjct 1014 AAAATCATGGAGTCATCCTAATTCCTGAAGGGCTTGTTGAGAGTATTCCTGAACTCTATG 1073
Query 1089 CTCTGTTAAAGGAAATTCACGGGCTGC-TGAGGCAGGGTGTATC-TGCTGATAAGATTTC 1146
||||||| ||||||||||| || ||| | ||| ||||||| | |||||||| |||||
Sbjct 1074 CTCTGTTGAAGGAAATTCATGGATTGCTTAAGG-AGGGTGT-GCAGGCTGATAATATTTC 1131
Query 1147 TACTCAGCTCTCACCTTGGTCATCTGCTTTGTTTGAATTTCTT-CCTCCATTCATTAAGA 1205
||||||||| ||||| |||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 1132 TACTCAGCTGTCACCGTGGTCATCTGCTTTGTTTGAGTTT-TTGCCTCCATTCATTAAGA 1190
Query 1206 AACAGCTACTTCTCCATCCTGAGTCTGATGATTCTGCTCAGCTATCCCAGATTGAGACAG 1265
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1191 AACAGCTACTTCTCCATCCCGAGTCTGATGATTCTGCTCAGCTATCCCAGATTGAGACGG 1250
Query 1266 AGAAACTTCTTGCGTATCTCGTGGAGACTGAAATGAACAAGCGCTTGAAAGAAGGCACAT 1325
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1251 AGAAACTTCTAGCTTATCTTGTGGAGACTGAAATGAACAAGCGCTTGAAAGAAGGGACCT 1310
Query 1326 ACAAGGGGAAGAAATTCAATGCCATATGTCACTTTTTTGGTTACCAAGCTCGTGGATCTC 1385
|||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |
Sbjct 1311 ACAAAGGGAAGAAATTCAACGCTATCTGTCACTTTTTTGGTTACCAAGCTCGTGGATCAC 1370
Query 1386 TTCCATCGAAATTCGATTGTGATTACGCCTACGTTCTTGGACATATATGTTACCACATCC 1445
||||||| |||||||||||||| || ||||| |||||||||||| |||||||||||||||
Sbjct 1371 TTCCATCAAAATTCGATTGTGACTATGCCTATGTTCTTGGACATGTATGTTACCACATCC 1430
Query 1446 TTGCAGCTGGTCTGAATGGTTACATGGCAACAGTGACCAACCTAAAAAGTCCTGTGAACA 1505
| ||||||||| ||||||||||||||||||||||||| ||||| || || ||||| ||||
Sbjct 1431 TCGCAGCTGGTTTGAATGGTTACATGGCAACAGTGACTAACCTGAAGAGCCCTGTAAACA 1490
Query 1506 AGTGGAAATGTGGTGCTACACCTATTACAGCGATGATGACGGTGAAGCATTGGTCCCAGG 1565
| ||||||||||| ||| |||| ||| ||| ||||||||||| |||| |||||||||
Sbjct 1491 AATGGAAATGTGGGGCTGCACCGATTTTAGCAATGATGACGGTTAAGCGTTGGTCCCAAA 1550
Query 1566 ATGCTAGTTATACTTTAACTTCAATTGGTAGACCTGCAATTCATCCAGCTATG-GTGGAT 1624
|| || ||| || | |||| ||||||| ||||| ||||||||||||| | || ||
Sbjct 1551 ATTCTGGTT---CT--A-CTTCGATTGGTAAACCTGTAATTCATCCAGCT-TCAGTCGAC 1603
Query 1625 TTGAAAGGCAAAGCATACGACCT-CTTGAGACAGAATGCACAAAAATTCTTGATGGAAGA 1683
|||||||||||||||||||| || || |||||| || || || |||||||||||||||||
Sbjct 1604 TTGAAAGGCAAAGCATACGATCTACT-GAGACAAAACGCGCAGAAATTCTTGATGGAAGA 1662
Query 1684 TCTGTACAGAAACCCAGGACC-GCTACAGTACGATGGTCCTGGTGCGGATGCTAAAG-CA 1741
| ||||||||||||||||||| | | || || |||||||| ||||| ||||| |||| |
Sbjct 1663 TATGTACAGAAACCCAGGACCTG-TCCAATATGATGGTCCAGGTGCAGATGC-AAAGGCG 1720
Query 1742 GTGAGTCTCTGTGTTGAAGATCAAGATTACATGGG-ACGTATCAAGAAGCTGCAGGAATA 1800
|| ||||| ||||| ||||| || ||||||||||| | ||||||||||||||||| ||
Sbjct 1721 GTAAGTCTGTGTGTAGAAGACCAGGATTACATGGGGAAA-ATCAAGAAGCTGCAGGAGTA 1779
Query 1801 TCTTGACCAAGTGAGGACGATAGTGAAACCAGGATGTTCTCAAGACGTATTGAAGGCAGC 1860
|||||| || |||||||||||||||||||| || || |||||||| || ||||| || ||
Sbjct 1780 TCTTGATCAGGTGAGGACGATAGTGAAACCGGGTTGCTCTCAAGATGTTTTGAAAGCGGC 1839
Query 1861 ACTGAGTGTGATGGCTTCGGTGACTGATGTTCTTACTAC 1899
| ||||||| ||||| ||||||||||||||||| |||||
Sbjct 1840 ATTGAGTGTTATGGCGTCGGTGACTGATGTTCTCACTAC 1878
> Ahg890188 jgi|Araly1|890188|Al_scaffold_0007_2174
Length=234
Score = 265 bits (143), Expect = 1e-69
Identities = 178/194 (92%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 344 GTTGGAATTGTGTTTTGTGGAAGGCAAGCTCCAGGTGGACATAATGTGATCTGGGGTCTT 403
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 GTTGGAATTGTGTTTTGTGGAAGGCAAGCTCCTGGTGGACACAATGTGATCTGGGGTCTT 60
Query 404 TTCGAGGCTCTCAAGGTGCACAACGCAAAAAGCACTTTGCTAGGATTTTTGGGTGGTTCC 463
||||| |||||||||||||||||||||||||||||||||||||| ||| || || ||||
Sbjct 61 TTCGAAGCTCTCAAGGTGCACAACGCAAAAAGCACTTTGCTAGGCTTTCTG--TG-TTCC 117
Query 464 GA-GGGTCTATTTGCACAAAAGACTCTAGAGATTACAGATGATATACTTCAGACTTACAA 522
|| ||| ||||||| |||||| ||||| ||||||||||||||||||||||||| || |||
Sbjct 118 GAAGGG-CTATTTGGACAAAATACTCTGGAGATTACAGATGATATACTTCAGATTTCCAA 176
Query 523 AAACCAAGGTGGTT 536
|||||||||| |||
Sbjct 177 AAACCAAGGTAGTT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80979860870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5