BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20970.1
Length=4673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472337 jgi|Araly1|472337|fgenesh2_kg.1__2291__AT1G20970.1 3500 0.0
> Ahg472337 jgi|Araly1|472337|fgenesh2_kg.1__2291__AT1G20970.1
Length=4117
Score = 3500 bits (1895), Expect = 0.0
Identities = 2126/2234 (95%), Gaps = 29/2234 (1%)
Strand=Plus/Plus
Query 2452 TAAAGACTGTGTGGACAGCCAACCTGCTGAAAACAAAGAAGGAAATGTTGTTGATAGAAC 2511
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1894 TAAAGACTGTGTGGACAGCCAACCTGCTGAAAAGAAAGAAGGAAATGCTGTTGATAGAAC 1953
Query 2512 AGATGATAAAGTAGCCTCGACCGGTGAAGTTTCTGTACTTGATGCTTCTGAAGGGCTTAC 2571
|||||||||||||||||||||||||||||||| ||| | |||| ||||||||| ||| ||
Sbjct 1954 AGATGATAAAGTAGCCTCGACCGGTGAAGTTTTTGTGCCTGATACTTCTGAAGTGCTCAC 2013
Query 2572 TGTAGCGGCAGAGATAGAGAAAAGACCTTTTTACTTTCTGCCTAGAGTTCCTAGATATGA 2631
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2014 TGTAGCGGCAGAGATAGAGAAAAGACCGTTTTACTTTCTGCCTAGAGTTCCAAGATATGA 2073
Query 2632 TGATGAAAAGTTAGCCGAGCAACTGAAGCATGCTGAAGAGCAGGTTGATCAGAAAACACA 2691
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2074 TGACGAAAAGTTAGCCGAGCAACTCAAGCATGCTGAAGAGCAGGTTGATCAGAAAACACA 2133
Query 2692 AAATCGGGATGCTCTTAGAGCGGATATCCAGAAGATACGCGCAATATGTAAGGACTATGA 2751
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 GAGTCGGGATGCTCTTAGAGCGGATATCCAGAAGATACGCGCAATATGTAAGGACTATGA 2193
Query 2752 TATCAGTTACAAGGCGGTCATGGCAGAAGAGAGATCTGCAAGAAAAGCAATGCATTCAAA 2811
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2194 TATAAGTTACAAGGCGGCCATGACAGAAGAGAGATCTGCAAGAAAAGCAATGCATTCAAA 2253
Query 2812 ACGGCAGGAAATTGAGGCCCTTCAGTCTATGATTAGCCGGGTTAAAAGTGCTGCGTCTGT 2871
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2254 ACGGCAGGAAATTGAGGCCCTTCAGTCTATGATTAGCCGGGTTAAGAGTGCTGCATCTGT 2313
Query 2872 TGATGATATTGATTCAAGGGTGCGTAATATGGAACATACGATGCAGCACACAACTTTATC 2931
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 2314 TGATGATATTGATTCAAGGGTGCATAATATGGAACATATGATGCAACACACAACTTTATC 2373
Query 2932 TCTGAATGAAGAAAAAGGTTTCATGCGTGAAATAAAGCAGTTGAAGCAACTTCGCGAGCA 2991
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2374 TCTGAATGAAGAAAAAGGATTCATGCGTGAAATAAAGCAGTTGAAGCAACTTCGCGAGCA 2433
Query 2992 GATATCTTCGAGTATGGGTACCAAGGATGAAGTAAAGCAAGCATTGGATGAGAAAGAGAA 3051
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2434 GATATCTTCGAGTATGGGTACCAAGGATGAAGTTAAGCAAGCATTGGATGAGAAAGAGAA 2493
Query 3052 AACAGAAGAACGTTTGAAGGTGTTGAGGAAGGAACTAGACGCACTCAGAAACGATCTATC 3111
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2494 AACAGAAGAACGTTTGAAGGTGTTGAGGAAGGAACTAGACGCGCTCAGAAACGATCTCTC 2553
Query 3112 AAAAGCCGAAGAAATCACAAAAGCTGCGaaaaaaaaGTGTGATGGGGAATGGGAAGCACA 3171
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 2554 AAAAGCCGAAGCAATCACAAAAGCTGCTAAAAAAAAGTGTGATGAGGAATGGGAAGCGCA 2613
Query 3172 GAGTAAACTGCAAGAACAGTTCAGAGCTGCTGATGCTGTTCGCCAGGAAGCATTTGTGCA 3231
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2614 GAGTAAACTGCAAGAACAGTTCCGAGCTGCTGATGCTGTTCGCCAGGAAGCATTTGTGCA 2673
Query 3232 CCTACAGGATTTGAAGAAACAACAACGAGAAAAGAACAAATATTTCTTCAAGTACAGAGA 3291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 CCTACAGGATTTGAAGAAACAACAACGAGAAAAGAACAAATATTTCTTCAAGTACAGAGA 2733
Query 3292 TAATTCAAGGGCAGCAAGTGAAATGGCTTTGAAGAAAGACAGAGCAGCACTGCAAAGCCT 3351
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2734 TAATTCAAGGGCAGCAAGTGAAATGGCTTTGAAGAAAGACAGAGCAGCCCTGCAAAGCCT 2793
Query 3352 TTGTTCTGACCAGGTGGAGAATTTCATGAATATGTGGAACAATGACGACGAGTTCCGTAA 3411
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2794 TTGTTCTGACCAGGTGGAGAGTTTCATGAATATGTGGAACAATGACGAGGAGTTCCGTAA 2853
Query 3412 ATACTATGTAAAAAGCAACACAAGGAGTACCTTTAGAAGACTAGGAACCCTAGATGGACG 3471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2854 ATACTATGTAAAAAGCAACACAAGGAGTACCTTTAGAAGACTAGGAACCCTAGATGGACG 2913
Query 3472 ATCTCTTGGCCCTGATGAGGAGCCACCTCGGATCACTTATGCTCCAAGAACGGACAAACT 3531
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2914 ATCTCTTGGCCCTGATGAGGAGCCACCTCGGATCACTTATGCTCCAAGAACAGACAAACT 2973
Query 3532 TAGAACTTCTAGTGACAGAGCAGAGAAACATGAGGCAGTTCCAGCA---C-AG---AA-A 3583
|||||| |||||||||||||||||||||||||||||||||||| | | || || |
Sbjct 2974 TAGAACCTCTAGTGACAGAGCAGAGAAACATGAGGCAGTTCCACCGGTTCCAGCTCAACA 3033
Query 3584 -GAGAAAGTCGTTAAATTTGAAGGTTCAAAAGTTGAAAACAACGGTAAGGAGGTTGCTAA 3642
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 3034 AGAGAGAGTCGTTAAATTTGAAGGTTCAAAAGTTGAAAACAATGGTAAGGCTGTTGCTAA 3093
Query 3643 ACCCACCGAGCAAAAGAGTCAGACCACTAAATCTAAAAAGGCCGTCAAGCCAGACCAGCC 3702
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3094 ACCTACCGAACAGAAGAGTCAGACCACTAAATCTAAAAAGGCCGTCAAGCCAGACCAGCC 3153
Query 3703 TCCATCAATTGTCACAGAATTGGTTTCTGGAAAAGAGGAGATAGAGAAGTCAGCAACACC 3762
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3154 TCCACCAAATGTCACAGAATTGGTTTCTGGAAAAGAGGAGATAGAGAAGTCAGCAACACC 3213
Query 3763 Ggaagaagaagagccgcctaagttaacaaaagaggaagaggagttaattaagaaagaaga 3822
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3214 TGAAGAAGAAGAGCCACCTAAGTTAACAAAAGAGGAAGAGGAGTTAATTAAGAAAGAAGA 3273
Query 3823 agagaagagaaaacaaaaggaagctgcaaagatgaagGAGCAACATCGGTTagaggaaat 3882
|||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||
Sbjct 3274 GGAGAAGAGAAAACAAAAGGAGGCTGCGAAGATGAAGGAGCAGCATCGGTTGGAGGAAAT 3333
Query 3883 agcaaaagcgaaagaggcaatggagaggaagaagaagagagaggagaaggcaaaagcaag 3942
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3334 AGCAAAAGCGAAAGAGGCAATGGAGAGGAAGAAGAAGAGAGAGGAGAAAGCAAAAGCAAG 3393
Query 3943 agctgttctcaaggctcagaaggaagccgaagaaagggagaaggaacgagagaagaagct 4002
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 3394 AGCTGTTCTCAAGGCTCAGAAGGAAGCAGAAGAAAGGGAGAAGGAACGAGAAAAGAAGCT 3453
Query 4003 aaggaagaaggagagaagaaaggggatttttacatcagaagagaCAGCAACAGAAAACCC 4062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3454 AAGGAAGAAGGAGAGAAGAAAGGGGATTTTTACATCAGAAGAGACAGCAACAGAAAACCC 3513
Query 4063 AATTCCGACAGCAGAAACTGTAGTCGAAACCCCAAGGGAGATCGAAACTCCAAAGAAACA 4122
|||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3514 AATTCCAACATCAGAAACTGTAGTCGAAACCCCAAGGGAGATCGAAATTCCAAAGAAACA 3573
Query 4123 AACCGTAGAGGAGAGTCAACAAATGAAGAAATCTCACAAACCTTCATCACAGTTTCTGAA 4182
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 3574 AACCGTAGAGGAGAGTCAGCAAATCAAGAAATCTCACAAATCTTCATCACAGTTTCTCAA 3633
Query 4183 ACAAAACAAGTCAAAATCGGTTCCTCTGCCTTTAAGAAACCGAGGAAGCAAGAGAAAACT 4242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3634 ACAAAACAAGTCAAAATCGGTTCCTCTGCCTTTAAGGAACCGAGGAAGCAAGAGAAAACT 3693
Query 4243 GCGGCAATGGATGTGGATTGGACTCATAGTTGTGATCATCATCGCATTGTTCCTTCTCGG 4302
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3694 GCGGCAATGGATGTGGATTGGACTCATAGTTGTGATCATCCTCGCATTGTTCCTTCTCGG 3753
Query 4303 TAATGCCAATCTCTCCTCTCCTGCAAATCTTTGGTTTACATAAGAATaaaaaaaGAAAGA 4362
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 3754 TAATGCCAATCTCTCCTCTCCTGCAAATCTTTGGTTTACATAAGAACAAAAAAA-AAAGA 3812
Query 4363 AGAAGTGGCACACTCTTACACAC--TTTGCCTTGTGCTTTTTATAGTATGtttttttttG 4420
||||||||||||| ||||||||| ||||||||||| |||||||||| | ||||||||||
Sbjct 3813 AGAAGTGGCACACCCTTACACACACTTTGCCTTGTGGTTTTTATAGT-TATTTTTTTTTG 3871
Query 4421 GCTCATCTAAATTAGTTTGGATT-GTGGTTGGTGCTTTTATTCTTTT-TTCTTT-T-AAG 4476
|||||||||||||||||| |||| ||| ||||||||||||||||||| || ||| | |||
Sbjct 3872 GCTCATCTAAATTAGTTTAGATTTGTGTTTGGTGCTTTTATTCTTTTCTTTTTTCTTAAG 3931
Query 4477 TGGGGAAGCTTTGATTCATTGATTTCACACGAACGACAGACATATAGATTGGTTTTGCTT 4536
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3932 TGGGGAAGCTTTGATTCATTGATTTCACACGAACGACAGACATA--GATTGGTTTTGCTT 3989
Query 4537 GCTCTGGGTATATATGTCTAAGAAACACGGTTCCAGtttttt-ttATTTTCTAATATACC 4595
| ||||||||||| | | |||||||||||||||||||||||| || |||| |||||||||
Sbjct 3990 GTTCTGGGTATATGT-T-TAAGAAACACGGTTCCAGTTTTTTATTTTTTT-TAATATACC 4046
Query 4596 ATAATATATTTATTAAAGCAATAA-CTTCTTCTCATCTTTT--CGATTGATATATAAACT 4652
|||||||||| ||||||||||||| | |||||||||||||| |||| | |||| |||||
Sbjct 4047 ATAATATATT-ATTAAAGCAATAAACGTCTTCTCATCTTTTATCGAT-G-TATAAAAACT 4103
Query 4653 GGTGGAAGAGTCTC 4666
||||||| ||||||
Sbjct 4104 GGTGGAACAGTCTC 4117
Score = 2669 bits (1445), Expect = 0.0
Identities = 1775/1928 (92%), Gaps = 47/1928 (2%)
Strand=Plus/Plus
Query 16 TTCTCGATCTCGTCCTTAATTCCTTCCTTCTCT---AAGCCAGCTGTTttcttcttcttc 72
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 TTCTCGATCTCGTCCTTAATTCC-TCCTTCTCTAAGAAGCCAGCTGTTTTCTTCTTCTTC 59
Query 73 ttcttcatctctctctctctctcgtctcctactctc--tcttTGCTCGGACCAAAATTTC 130
|||||| | ||| || ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 60 TTCTTC-T-TCT-TC-ATCTCTCGTCTCCTACTCTCTTTCTTTGCTCGCACCAAAATTTC 115
Query 131 CTCAAATTCCTCCTCT-GTTAATCGCCGGCATTGTCTTTCTTACCGATCCGACTATCTCA 189
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTCAAATTCCT-CTTTCGTTAATCGCCGGCATTGTCTTTCTTACCGATCCGACTATCTCA 174
Query 190 GCATTCGAAATCTCCGGCGACAAAGCCTGATCTCAAGCTTATCGTTC-GT-GAAGCGGTG 247
|||||||||||||| |||||||||||||||||||||| || || || || ||||| |||
Sbjct 175 GCATTCGAAATCTCTGGCGACAAAGCCTGATCTCAAGATT-CCG-TCGGTGGAAGCTGTG 232
Query 248 AAAATGCCGGTGGAGGTAGAGAGAGACCAAGGAGAGGTGTCGGTGAAGGTTGATTTTGAG 307
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 233 AAAATGCCGGTGGAGGTGGAGAGAGATCAAGGAGAGGTGTCGGTGAAGGTTGATTTTGAG 292
Query 308 AATGCGACTGAGATTAAACCGGAGGTAGTTGTTTCGGCCACCAAAGAGGACGTGGTGAAT 367
||||||||||||||||||||||||||||| || | || |||||||||||||||||||||
Sbjct 293 AATGCGACTGAGATTAAACCGGAGGTAGTAATTCCTGCTACCAAAGAGGACGTGGTGAAT 352
Query 368 GGGATCAGCCATGGTGGTAGTAATAATGGCAACGGGAACGATACCGATGGTTCTTACGAT 427
||||||||| |||| | |||||||||| ||||| ||||| |||||||||||||||| |
Sbjct 353 GGGATCAGCGATGG-CG--GTAATAATGGTAACGGAAACGACACCGATGGTTCTTACGTT 409
Query 428 TTCATTACGGAGAATGATACCGTTGGAGATGATTTTGTAGAGTCTGATTATGTTAAGCCT 487
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 410 TTCATTACGGAGAATGATACCGTAGGAGATGATATTGTAGAGTCTGATTCTGTTAAGCCT 469
Query 488 GTTGATGATGCCAATGTGGAGAAAGATCTTAAGGAAGGAGAGAATGTGAAGGTAGATGCT 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 GTTGATGATGCCAATGTGGAGAAAGATCTTAAGGAAGGAGAGAATGTGAAGGTAGAGGCT 529
Query 548 CCAAGTATTGCCGATGATGATGTTTTGGGAGTTTCTCAAGATAGTCAAACCCTGGAAAAG 607
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ACAAGTATCGCCGATGATGATGTTTTGGGAGTTTCTCAAGATAGTCAAACCCTGGAAAAG 589
Query 608 TCTGAGCTAGAAAGTACAGATGATGGACCAGAGGAAGTCGTTGA-GATCCCAAAGTCGGA 666
||||| | |||||| |||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 590 TCTGAACGAGAAAGGACAGATGATGGACCAGAGGAGGTCGTT-AGGATCCCAAAGTCAGA 648
Query 667 AGTTGAGGATTCTCTTGAAAAAAGTGTCGACCAGCAGCATCCTGGTAATGGGCATCTAGA 726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AATTGAGGATTCTCTTGAAAAAAGTGTCGACCAGCAGCATCCTGGTAATGGGCATCTAGA 708
Query 727 AAGTGGGCTTGAGGGTAAAGTGGAATCTAAAGAGGAAGTGGAGCAACTTCATGATTCTGA 786
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 AAGTGGGCTTGAGGGTAAAGTGGAATCTAAAGAGGAAGTGGAGCAACTTCAAGATTCTGA 768
Query 787 AGTTGGATCCAAGGATCTGACAAAGAATAACGTAGAGG---AGCCTGAAGTTGAAATCGA 843
||||||||||| ||||||||| |||| ||||| ||||| || |||||| | |||| ||
Sbjct 769 AGTTGGATCCAGGGATCTGACCAAGATTAACGCAGAGGAAAAGTCTGAAGGTAAAATTGA 828
Query 844 ATCTGATAGTGAAACAGATGTCGAGGGACATCAAGGGGACAAGATTGAAGCCCAAGAAAA 903
| |||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 829 ACCTGATAGTAAAACAGATGTGGAGGGACATCGCGGGGACAGGATTGAAGCCCAAGAAAA 888
Query 904 ATCTGATCGGGATTTGGATGTTTCTCAAGATCTAAAACTTAACGAGAATGTAGAAAAGCA 963
|||||||| |||| |||||| | | | | | ||| |||||||||||
Sbjct 889 ATCTGATCTGGATGTGGATG----T-----T-T----C-T-----GAA-GTAGAAAAGCA 927
Query 964 CCCTGTTGACTCAGATGAAGTAAGGGAGTCTGAGTTGGTGAGCGCTAAGGTTTCTCCAAC 1023
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 928 CCCAGTTGACTCAGATGAAGTAAAAGAGTCTGAGTTGGTGAGCGCTAAGGTTTCTCCAAC 987
Query 1024 TGAGCCTAGTGATGGAGGCATGGATTTGGGACAACCTACGGTAACAGATCCAGCTGAAAC 1083
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 988 TGACCCTAGTGATGGAGGCACGGATTTGGGACAACCTACGGTAACAGATCCAGCTGATAC 1047
Query 1084 CATCAATGGATCTGAATCTGTGAATGATCACGTCGGATCAGAACCTGTAACAGTTTTGGA 1143
|||||||||||||||||||||||||||| | | ||||||||| ||||| ||||||||||
Sbjct 1048 TATCAATGGATCTGAATCTGTGAATGATCGCATTGGATCAGAATCTGTAGCAGTTTTGGA 1107
Query 1144 ACCTGTTTCTGTTGAAAACGGTCACCCTCCAGTAGAATCAGAGTTGGAGAGAAGTAGTGA 1203
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1108 ATCTGTTTCTGTTGAAAACGGTCACCCTCCAATAGAATCAGAGTTGGAGAGAACTAGTGA 1167
Query 1204 TGTTCCATTCACTTCAGTGGCGGAAAAAGTCAATGCTTCCGATGGTGAAGTGTTGCCAGA 1263
|||||||||| |||||| ||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 1168 TGTTCCATTCCCTTCAGAGGCGGAAAAAGTCAATGCTTCTGATGGTGAGGTGTTGGCAGA 1227
Query 1264 CTCTGGAACCGTGGATGTTGTTGTATCAGAGGTAAGCAGTGACGTCCCTGCTGAGACTCA 1323
|||| ||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1228 CTCTAGAACCGTGGATGTTGCTGTCTCAGAGGTAAGTAGTGATGTCCCGGCTGAGACTCA 1287
Query 1324 AGCTCTCAATGCCATCAGCTTGGATTCCCAGCCTTCTGGCAAAGATAGTGTTGTTGAAAA 1383
|||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AGCTTTTACTGCCATCAGTTTGGATTCCCAGCCTTCTGGCAAAGATAGTGTTGTTGAAAA 1347
Query 1384 TGGTAATAGCAAATCAGAATCTGAAGACAGCAAGATGCAATCGGAAATTGGAGCTGTTGA 1443
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1348 TGGTAATAGCAAATCGGAATCTGAAGACAGCAAGATGCAATCGGAAATTGGAGCTGGTGA 1407
Query 1444 TGATGGCTCTGTGTCTGATGGGAGTATAAACACTCATCCAGAATCTCAAGATGCCAGCGA 1503
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1408 TGATGTCTCTGTGTCTGATGGGAGTATTAACACTCATCCAGAATCTCAAGATGCCAGTGA 1467
Query 1504 TCCTACTTGTGATCAAGGTGGAAAACAACACATATCATCCGAAGTTAAGGAAGTTCTTGA 1563
||||||||||||||||| ||||||||||| |||| |||| |||| |||||||||||||||
Sbjct 1468 TCCTACTTGTGATCAAGATGGAAAACAACGCATAGCATCTGAAGCTAAGGAAGTTCTTGA 1527
Query 1564 TGCCCCTGCTTCAGAAGAAATAAGTGATGCTGTTATTGTTGCCAAAGATAATGGTTCAGA 1623
||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 1528 TGCCCTTGCTTTAGAAGAAAGAAGTGATGCTGTTATTGTTGCCAAAGAGAATGTTTCAGA 1587
Query 1624 AGCTGCTATTTCTGATGGCTTATCTTGTACTAACCAGCAGGGATCAGAAAGTGATGAGAT 1683
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1588 AGCTGCTATTTCTGATGGCTTATCTTGTACCAACCAGCAGAGATCAGAAAGTGATGAGAT 1647
Query 1684 ATCTGGGCTAGTTGAAAAACTCCCATCCCATGCGCTACATGAGGTTGTGTCTTCTGCGAA 1743
|| |||||| ||||||||||||||||||||| ||||||||||||||| | |||||| |||
Sbjct 1648 ATATGGGCTTGTTGAAAAACTCCCATCCCATACGCTACATGAGGTTGCGCCTTCTGGGAA 1707
Query 1744 TGACACGAGTGTAATTGTAAGCGATGACACCAAAAGTCAAGGTTTATCAGAGGATCATGG 1803
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 TGACACAAGTGTAATTGTAAGCGATGACACCAAAAGTCAAGGTTTATCAGAGGATCATGG 1767
Query 1804 AGTTGACACTAACCAGACA-ATTCAAGATGATTGTAGTGCTGAGTTGGAAGAAGTTACCG 1862
||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1768 AGTTGACACTAACCAGA-AGATTCAAGATGATTGTGGTGCTGAGTTGGAAGAAGTTACCG 1826
Query 1863 ATGTGAATGTAAAACATGCTCCAAATGAGAAAGTTCAAGGAGACAATAGCGAGGGGAACT 1922
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1827 ATGTGAATGTAAAACATGCTCCAAATGAGAAAGTTCAAGGGGACAACAGCGAGGGGAACT 1886
Query 1923 TAAATGTT 1930
||||||||
Sbjct 1887 TAAATGTT 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 176815484158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5