BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20980.1
Length=4014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472338 jgi|Araly1|472338|fgenesh2_kg.1__2292__AT1G20980.1 5336 0.0
Ahg927054 jgi|Araly1|927054|scaffold_202615.1 2100 0.0
> Ahg472338 jgi|Araly1|472338|fgenesh2_kg.1__2292__AT1G20980.1
Length=4017
Score = 5336 bits (2889), Expect = 0.0
Identities = 3413/3654 (93%), Gaps = 84/3654 (2%)
Strand=Plus/Plus
Query 417 GAGGACTTTGAAAAAGGGTCAGACTCAGATCGAGAGATATGGATGAGGTAGGAGCTCAAG 476
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 388 GAGGACTTTGAAAAAGGGTCAGACTCAGATCGAAAGAGATGGATGAGGTAGGAGCTCAAG 447
Query 477 TGGCTGCTCCGATGTTTATACATCAAT-CGCTGGGGAGAAAGCGAGATCTTTATTATCCG 535
||||||||||||||||||| |||| || || |||||| ||| || |||||||||||||||
Sbjct 448 TGGCTGCTCCGATGTTTATTCATC-ATCCGATGGGGAAAAAACGCGATCTTTATTATCCG 506
Query 536 ATGTCGAATCGGTTGGTTCAATCTCAGCCTCAGCGTAGAGATGAGTGGAATTCGAAGATG 595
|| |||||||||||||||| ||||||| | | |||||| |||||||||||||| ||||||
Sbjct 507 ATATCGAATCGGTTGGTTCCATCTCAG-C-C-GCGTAGTGATGAGTGGAATTCCAAGATG 563
Query 596 TGGGATTGGGATAGCCGGAGATTTGAAGCTAAACCGGTGGATGTTGA--------GG-T- 645
||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 564 TGGGATTGGGATAGCCGGAGATTTGAAGCTAAACCGGTGGATGTTGAGGTTCTTCGGTTA 623
Query 646 -----T------CAAGAGTTTGATTTGACTTTGAGGAATAGGAGTGGTGAAGAAAGAGGA 694
| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 624 GGAAATGAGGCACAAGAGTTTGATTTGACTTTGAGGAATAGGATTGGTGAAGAAAGAGGA 683
Query 695 CTTGATTTGAATCTGGGAAGTGGTTTGACTGCTGTGGAAGA---GACGACGACGACGACG 751
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 684 CTTGATTTGAATCTGGGAAGTGGTTTGACCGCTGTGGAAGATTTGACGACGACGACGACG 743
Query 752 CAGAACGTTAGACCGAACAAGAAGGTTCGGTCTGGATCTCCGGGAGGGAATTATCCCATG 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CAGAACGTTAGACCGAACAAGAAGGTTCGGTCTGGATCTCCGGGAGGGAATTATCCCATC 803
Query 812 TGTCAGGTTGATAATTGTACTGAAGATTTGTCTCATGCTAAGGATTATCATAGAAGGCAT 871
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGTCAGGTGGATAATTGTACTGAAGATTTGTCTCATGCTAAGGATTATCATAGAAGGCAT 863
Query 872 AAAGTTTGTGAAGTTCATAGTAAAGCTACTAAAGCTCTTGTTGGTAAACAGATGCAGAGG 931
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 864 AAAGTTTGTGAAGTTCATAGCAAAGCTACTAAAGCTCTTGTTGGGAAACAGATGCAGAGG 923
Query 932 TTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTTTGATGAGGGGAAGAGAAGT 991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 924 TTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTTTGATGAGGGAAAGAGAAGT 983
Query 992 TGTAGGCGTAGATTGGCTGGCCATAATCGACGGAGGAGGAAAACTACGCAGCCGGAGGAG 1051
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 984 TGTAGGCGTAGATTGGCTGGCCATAACCGACGTAGGAGGAAAACTACGCAGCCGGAGGAG 1043
Query 1052 GTTGCATCTGGGGTTGTGGTTCCGGGGAACCATGATACTACTAACAATACGGCTAACGCC 1111
||||||||||||||||||||||||||||||| ||||| || ||| ||||| ||| ||||
Sbjct 1044 GTTGCATCTGGGGTTGTGGTTCCGGGGAACCGTGATAATATTAATAATACCTCTACCGCC 1103
Query 1112 AATATGGATCTTATGGCTTTGTTAACCGCCTTAGCTTGTGCACAAGGTAAGAATGCGGTA 1171
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1104 AATATGGATCTTATGGCTTTGTTAACTGCCTTAGCTTGTGCACAAGGTAAGAATGCGGTA 1163
Query 1172 AAGCCCCCAGTGGGATCTCCAGCTGTGCCTGATAGAGAGCAGCTTCTTCAGATACTTAAC 1231
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAG---CCAGTGGGGTCTCCAGCTGTGCCTGATAGAGAGCAGCTTCTTCAGATACTTAAC 1220
Query 1232 AAGATAAATGCATTGCCTTTGCCTATGGATCTTGTCTCTAAGTTGAACAATATTGGAAGT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AAGATAAATGCATTGCCTTTGCCTATGGATCTTGTCTCTAAGTTGAACAATATTGGAAGT 1280
Query 1292 TTAGCCAGGAAAAATATGGATCACCCGACGGTGAACCCACAAAATGATATGAATGGGGCT 1351
||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1281 TTAGCAAGGAAAAATATGGATAACCCAACGGTGAACCCCCAAAATGATATGAATGGGGCT 1340
Query 1352 TCTCCTTCTACCATGGACTTGCTTGCTGTTCTTTCGACGACATTAGGTTCATCTTCACCT 1411
||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||
Sbjct 1341 TCTCCTTCTACCATGGACTTGCTTGCTGTTCTTTCAACAACGTTAGGCTCATCTTCACCT 1400
Query 1412 GATGCACTAGCGATATTATCTCAAGGTGGGTTTGGTAACAAAGACAGCGAGAAGACTAAG 1471
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GATGCACTAGCCATATTATCTCAAGGTGGGTTTGGTAACAAAGACAGCGAGAAGACTAAG 1460
Query 1472 TTATCGTCTTATGAAAATGGTGTTACAACCAACTTGGAAAAGAGAACTTTTGGGTTTTCT 1531
||||| ||||||||| | ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1461 TTATCTTCTTATGAACACGGTGTAACAACCAATTTGGAAAAGAGAACTTTTGGGTTTTCT 1520
Query 1532 TCTGTTGGGGGAGAGAGGAGCAGTAGCAGTAACCAATCTCCTTCTCAGGATTCTGACTCA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1521 TCTGTTGGGGGAGAGAGGAGCAGTAGCAGTAACCAATCTCCTTCTCAGGATTCAGATTCA 1580
Query 1592 CGTGGTCAAGACACTAGGTCTAGCTTGTCTCTACAACTATTCACCTCATCACCCGAGGAT 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1581 CGTGGTCAAGACACTAGGTCTAGCTTGTCTCTACAACTATTCACCTCATCACCTGAGGAT 1640
Query 1652 GAGAGTCGACCGACAGTAGCATCTTCTAGAAAGTATTATTCTTCTGCCAGCAGTAATCCT 1711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 GAGAGTCGACCGACAGTGGCATCTTCTAGAAAGTATTATTCTTCTGCCAGCAGTAATCCT 1700
Query 1712 GTGGAGGATAGATCACCATCTTCTTCTCCGGTCATGCAGGAGTTATTCCCCTTGCAGGCA 1771
|| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 1701 GTTGAGGATAGATCGCCATCTTCCTCTCCGGTCATGCAGGAGTTATTCCCATTGCAGACA 1760
Query 1772 TCCCCTGAAACCATGAGGTCCAAGAATCATAAAAACTCAAGTCCCAGGACTGGTTGCTTG 1831
|||||||||||||||||||| |||||||| || ||| |||||||||||| ||||||||||
Sbjct 1761 TCCCCTGAAACCATGAGGTCTAAGAATCACAATAACACAAGTCCCAGGAGTGGTTGCTTG 1820
Query 1832 CCCCTTGAGCTCTTTGGTGCATCGAATAGAGGAGCTGCAGATCCTAACTTTAAAGGTTTC 1891
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 1821 CCCCTTGAGCTCTTTGGTGCATCGAATAGAGGAACTGCAAATCCTAATTTTAAAGGTTTC 1880
Query 1892 GGGCAACAGTCTGGTTATGCTTCTTCTGGCTCTGACTACTCTCCTCCTAGCTTAAACTCT 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GGGCAACAGTCTGGTTATGCTTCTTCTGGCTCTGACTACTCTCCTCCTAGCTTAAACTCT 1940
Query 1952 GATGCTCAGGACCGCACTGGAAAGATAGTCTTTAAACTACTTGATAAAGATCCAAGTCAG 2011
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1941 GATGCTCAGGACCGCACTGGAAAGATAGTCTTCAAACTACTTGATAAAGATCCAAGTCAG 2000
Query 2012 CTCCCTGGGAC-TCTACGATCTGAGATCTATAACTGGCTTTCGAACATTCCATCAGAAAT 2070
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 CTCCCTGGGACAT-TACGATCTGAGATCTATAACTGGCTTTCGAACATTCCATCAGAAAT 2059
Query 2071 GGAGAGTTATATCAGGCCTGGCTGTGTTGTTCTATCTGTTTATGTAGCAATGTCACCTGC 2130
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2060 GGAGAGTTATATCAGGCCTGGCTGTGTTGTTCTATCTGTTTATGTAGCGATGTCACCTGC 2119
Query 2131 AGCCTGGGAACAACTTGAGCAAAAATTGCTGCAACGGCTTGGTGTTTTGCTACAAAATTC 2190
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2120 AGCCTGGGAACAACTCGAGCAAAACTTGCTGCAACGGCTTGGTGTTTTGCTACAAAATTC 2179
Query 2191 TCCTTCTGATTTTTGGAGAAACGCAAGATTTATAGTTAACACGGGAAGACAACTCGCATC 2250
|||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct 2180 TCCTTCTGATTTTTGGAGAAACGCGAGATTTATAGTTAACACGGGCAGGCAGCTCGCATC 2239
Query 2251 ACACAAAAATGGTAAAGTTCGATGTAGCAAATCTTGGAGAACTTGGAATTCACCAGAGCT 2310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 ACACAAAAATGGTAAAGTTCGATGTAGCAAATCTTGGAGAACTTGGAATTCACCAGAGCT 2299
Query 2311 CATCTCAGTGTCACCTGTAGCTGTGGTAGCTGGTGAAGAAACAAGTTTGGTTGTAAGAGG 2370
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 CATCTCAGTATCACCTGTAGCTGTGGTAGCTGGTGAAGAAACAAGTTTGGTTGTAAGAGG 2359
Query 2371 TAGAAGCTTGACGAATGATGGAATCAGTATTCGTTGCACACATATGGGTAGCTACATGGC 2430
||||||||||| || || |||||||||||||| |||||||||||||||||||||||| |
Sbjct 2360 GAGAAGCTTGACTAACGAGGGAATCAGTATTCGCTGCACACATATGGGTAGCTACATGTC 2419
Query 2431 AATGGAGGTAACCAGGGCAGTGTGTAGACAAACCATATTTGACGAGTTGAATGTAAATAG 2490
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 2420 AATGGAGGTAACCGGGGCAGTGTGTAGAGAAGCCATATTTGACAAGTTGAATGTAGATAG 2479
Query 2491 TTTCAAAGTCCAAAATGTACACCCTGGTTTTCTTGGACGCTGTTTCATTGAGGTGGAGAA 2550
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2480 TTTCAAAGTCCAAAATGTACACCCTGGTTTTCGTGGACGCTGTTTCATTGAGGTGGAGAA 2539
Query 2551 TGGATTCAGGGGTGACAGTTTTCCATTGATAATTGCCAATGCATCCATCTGCAAAGAGTT 2610
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2540 TGGATTCAGGGGTGACAGTTTTCCATTGATTATTGCCAATGAATCCATCTGCAAAGAGTT 2599
Query 2611 GAATCGTCTCGGAGAAGAGTTTCACCCCAAAAGTCAAGATATGACAGAAGAGCAAGCGCA 2670
||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2600 AAATCGCCTCGAAGAAGAGTTTCACCCCAAAAGTCAAGATATGACAGAAGAACCAGCGCA 2659
Query 2671 GAGCTCAAATCGTGGTCCCACATCAAGAGAAGAAGTTTTGTGCTTCTTGAACGAGCTTGG 2730
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2660 GAGCTCAAATCGCAGTCCCACGTCAAGAGAAGAAGTTTTGTGCTTCTTGAACGAGCTTGG 2719
Query 2731 TTGGCTTTTCCAGAAGAATCAGACCTCTGAGCTTCGGGAACAATCTGACTTTTCCCTTGC 2790
|||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 2720 TTGGCTTTTCCAGAAGAACCAGACCTCTCAGCCTCGGGAACAATCCGACTTTTCCCTTGC 2779
Query 2791 CCGCTTCAAGTTTTTGCTAGTTTGCTCAGTTGAAAGAGATTACTGTGCTCTCATCAGAAC 2850
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2780 CCGCTTCAAGTTTTTACTTGTTTGCTCGGTTGAAAGAGATTACTGTGCTCTCATCAGAAC 2839
Query 2851 GCTCCTCGACATGTTAGTAGAGAGAAATTTGGTGAATGATGAGCTGAACAGAGAAGCCCT 2910
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2840 ACTCCTCGACATGTTGGTAGAGAGAAATTTGGTGAATGATGAGCTGAACAGAGAAGCCTT 2899
Query 2911 GGATATGCTTGCTGAGATTCAGTTGTTGAATCGTGCTGTTAAGAGGAAAAGCACAAAAAT 2970
||| ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2900 GGAAATGCTCGCCGAGATTCAGTTGTTGAATCGTGCTGTTAAGAGGAAAAGCACAGAAAT 2959
Query 2971 GGTCGAACTACTCATTCATTAC-CTGGTTAACCCCTT-GACACTCAGTTCCTCCAGAAAG 3028
||| |||||||||||||||||| | |||||| |||| | ||||||||||||||| ||||
Sbjct 2960 GGTTGAACTACTCATTCATTACTC-GGTTAATCCCTCAG-CACTCAGTTCCTCCAAAAAG 3017
Query 3029 TTCGTTTTCTTACCTAATATAACTGGACCTGGCGGTATCACACCTTTACATCTAGCTGCA 3088
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3018 TTCGTTTTCTTACCCAATATAACTGGACCTGGCGGTATCACACCTTTACATCTAGCTGCT 3077
Query 3089 TGTACATCTGGTTCAGATGATATGATTGATCTACTCACCAATGATCCACAAGAGATTGGA 3148
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 3078 TGTACATCTGGTTCAGATGCTATGATTGATCTACTCACCAATGATCCACAAGAGATCGGA 3137
Query 3149 TTATCGAGCTGGAACACTCTTCGCGATGCAACCGGGCAAACTCCATACAGCTACGCTGCA 3208
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3138 TTATCGAGCTGGAACACTCTTTGCGATGCAACCGGGCAAACTCCATACAGCTACGCTGCA 3197
Query 3209 ATAAGGAACAACCATAACTATAACTCATTGGTGGCTCGTAAACTTGCAGACAAAAGAAAC 3268
|| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 3198 ATGAGGAACAACCATAACTATAACTCATTGGTGGGTCGTAAACTTGCAGATAAAAGAAAC 3257
Query 3269 AAGCAAGTCTCACTAAACATCGAGCACGAGGTAGTTGACCAAACCGGTCTGAGCAAGAGA 3328
| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3258 AGGCAAGTCTCGCTAAACATCGAGCACGAGATAGTTGACCAAACCGGTCTGAGCAAGAGA 3317
Query 3329 TTAAGTTTAGAGATGAACAAGTCATCATCATCTTGTGCCTCGTGTGCAACGGTGGCTTTG 3388
|||||| ||||||||||||||||||||| | | |||||||||||||||| |||||| |
Sbjct 3318 CTAAGTTCAGAGATGAACAAGTCATCATC-T-T-GTGCCTCGTGTGCAACCGTGGCTCTA 3374
Query 3389 AAGTATCAAAGGAGAGTTTCAGGTTCACAACGTTTGTTCCCAACTCCTATCATTCACTCA 3448
|||||||||| ||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 3375 AAGTATCAAAAAAGAGTTTCAAATTCACACCGATTGTTCCCAACTCCTATCATTCACTCA 3434
Query 3449 ATGCTTGCGGTTGCAACGGTCTGCGTTTGCGTCTGCGTTTTCATGCATGCTTTCCCAATC 3508
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3435 ATGCTTGCGGTTGCAACGGTCTGCGTTTGCGTCTGCGTTTTCATGCACGCTTTCCCAATC 3494
Query 3509 GTCAGACAAGGGTCTCACTTCAGTTGGGGAGGTTTGGATTATGGCTCAATCTAGAGAACT 3568
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3495 GTCAGACAAGGTTCTCACTTCAGTTGGGGAGGTTTGGATTATGGCTCAATCTAGAGAAAT 3554
Query 3569 ATACTATATAAAAGTATTATAATTTATTCTTTTGGTTTCTCGAAGACaaaa-aaaaa--T 3625
|||||||||||| | | ||||||||||||||||||||| | ||||||||| ||||| |
Sbjct 3555 ATACTATATAAA--T-T-ATAATTTATTCTTTTGGTTTCACAAAGACAAAACAAAAAAAT 3610
Query 3626 AAGAAAAAGAGAAGAGACTTTGGTACAAATAGAAGGAAAAGCTCAGAGACATGACTGTGA 3685
||| ||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||
Sbjct 3611 AAGTAAAAGAGAAGAGACTCTGGTACGGATATAAGGAGAAGCTCAGAGACATGACTGTGA 3670
Query 3686 CACACGACCAAAAGTGACTACAGTATT-ACTCGAGGAAGTTTCACCGTCGGGATGttttt 3744
|||||||||||| |||||| ||||||| |||||||| |||||||||||||||| ||||||
Sbjct 3671 CACACGACCAAA-GTGACTGCAGTATTTACTCGAGGGAGTTTCACCGTCGGGA-GTTTTT 3728
Query 3745 tctttctttct-t-t-caattatatatatattttggttttgctaatttgtt--------c 3793
| ||| ||||| | | | ||||||||||| ||| ||||| ||||||||||| |
Sbjct 3729 TTTTTTTTTCTGTCTTCGATTATATATAT-TTT-GGTTTGGCTAATTTGTTGTGTATTTC 3786
Query 3794 tgt--atttcCTTGTACGTTT-CCTACTTTTTATGATTATTATT-TTA--A------CTA 3841
||| |||||||| ||| ||| |||||||| ||||||||||||| ||| | |||
Sbjct 3787 TGTGTATTTCCTTCTACATTTTCCTACTTTCTATGATTATTATTATTATTATTTTAACTA 3846
Query 3842 AGATAATAACATGCTGCTTCATATAAGAAGCAgttgttttta-tgttttgtttttttggt 3900
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 3847 AGATAATAACATGCTGCTTCATATAAGAAGCAGTTGTTTT-ACTGTTTTGTTTTTTTG-T 3904
Query 3901 tcttttatctttgtaaatttgtactttgtACAAGTAGTTCTCTTGTTGTAACTTTAAGAA 3960
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3905 TCTTTG-TCTTTGTAAATTTGTACTTTGTACAAGTAGTTCTCTTGTTGTAACTTCAAGAA 3963
Query 3961 ATTATGTAA-TTC-TT-TT-CTTATTCTCGAAAGTCAAAATGCATAACCATTTT 4010
|||||||| || || || |||||||||| ||||| |||||||||||||||||
Sbjct 3964 TTTATGTAACTTTGTTGTTTCTTATTCTCGCAAGTCTAAATGCATAACCATTTT 4017
Score = 435 bits (235), Expect = 2e-120
Identities = 345/394 (88%), Gaps = 23/394 (6%)
Strand=Plus/Plus
Query 2 TAAGGACTTGAAGACATC----AGAGACCAA-G-G-ACCaaaa-aaaaaagaaaaaGCTT 53
|||||||||||||||| | ||||||||| | | | |||| |||||| |||||||||
Sbjct 1 TAAGGACTTGAAGACAGCAGAGAGAGACCAAGGAGAAGAAAAAGAAAAAAAAAAAAGCTT 60
Query 54 TGAT--TACCA-GAAGAAGAAGAAGGACAAAGTTTGAGACTTTGGAAGATTTGAAGAAGG 110
| || | | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 T-ATCAGAAGACGAAGAAGAAGAAGGACAAAGTTTGAGACTTTGTAAGATTTGAAGAAG- 118
Query 111 A-AGCTCTAAGCTGGTGAGGAGAGAAAATCAAATCCTTTTCTCTTAGTTTCCTTGATTGG 169
| ||||| |||||||||||||||||| |||| |||||| ||||| || ||||||||| |
Sbjct 119 ATAGCTCGAAGCTGGTGAGGAGAGAAG-TCAAGTCCTTT-CTCTT-GTGTCCTTGATTAG 175
Query 170 ATCGGGAAAATCTACAAGTTGAAAGATTCGTTTTTT--G-AAATCATTTCGAATCTGAAC 226
||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 176 ATCGGGAAA-TCTACAAGTTGAAAGATTCGTTTTTTTTGTAAATCATTTCGAATCTGAAC 234
Query 227 ATTCGATTTC-GAGTCATGTTTTGCTTGATTTGTCTTAAGCTTTCGTTGAATCGAAGAAG 285
|||||||||| | |||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 235 ATTCGATTTCTG-GTCATGTTTTGCCTGATTCGTCTCGAGCTTTCGTTGAATCGAAGAAG 293
Query 286 CGTTTATGCTTGAAAGCTCAGATTTTGTGTTTACTGATTAGCTAAGAGTTAGATATGATG 345
|||||||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||
Sbjct 294 AGTTTATGCTTGAAAGCTCCGATTTTGTGTTTACTTATTAGCTAAGAGGTAGATCTGTTG 353
Query 346 AGTAGCTACGTTGGTTCGTTCCTCCCCTAGAGAT 379
||||| |||||||||||||||||| ||||||||
Sbjct 354 AGTAGGTACGTTGGTTCGTTCCTCAGCTAGAGAT 387
> Ahg927054 jgi|Araly1|927054|scaffold_202615.1
Length=3147
Score = 2100 bits (1137), Expect = 0.0
Identities = 2295/2834 (81%), Gaps = 159/2834 (6%)
Strand=Plus/Plus
Query 794 GGAGGGAATTATCCCATGTGTCAGGTTGATAATTGTACTGAAGATTTGTCTCA-TGCTAA 852
||||| || ||||| | |||||||||||||||||||| |||||||| || | ||||||
Sbjct 386 GGAGGAAACTATCCAAAGTGTCAGGTTGATAATTGTAAGGAAGATTTATC-AATTGCTAA 444
Query 853 GGATTATCATAGAAGGCATAAAGTTTGTGAAGTTCATAGTAAAGCTACTAAAGCTCTTGT 912
||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 445 GGATTATCATAGAAGACATAAAGTATGTGAGGTTCATAGCAAAGCTACTAAAGCTCTTGT 504
Query 913 TGGTAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTT 972
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TGGGAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTT 564
Query 973 TGATGAGGGGAAGAGAAGTTGTAGGCGTAGATTGGCTGGCCATAATC-GACGGAGGAGGA 1031
||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||| ||
Sbjct 565 TGATGAGGGGAAGAGAAGTTGTAGGCGTAGATTGGATGGCCATAA-CAGGCGGAGGA-GA 622
Query 1032 AAACTACGCAGCCGGAGGAGGTTGCATCTGGGGTTGTGGTTC-CGGGGAACCATGATACT 1090
||| |||| ||| || | | || | ||| |||||| | || | | ||| | ||||| |
Sbjct 623 AAA--ACGCTGCCCGATGTGATTACGTCTCAGGTTGTAGCTCTC-GAGAATCGTGATAAT 679
Query 1091 ACTAACAATACGGCTAACGCCAATATGGATCTTATGGCTTTGTTAACCGCCTTAGCTTGT 1150
||| | || |||||| ||||||||| |||||||||||||||| || |||| ||||
Sbjct 680 ACT-TC--TA---ATAACGCTAATATGGATGTTATGGCTTTGTTAACGGCTTTAGTTTGT 733
Query 1151 GCACAAGGTAAGAATGCGGTAAAGCCCCCAGTGGGATCTCCAGCTGTGCCTGATAGAGAG 1210
|||||||||||||| | || | | | |||| ||||| | |||||||||||||||
Sbjct 734 GCACAAGGTAAGAACGAGG-CTA-TTACTAATGGG-TCTCCGGGAGTGCCTGATAGAGAG 790
Query 1211 CAGCTTCTTCAGATACTTAACAAGATAAATGCATTGCCTTTGCCTATGGATCTTGTCTCT 1270
|||||||||||||||||||||||||| || || || ||||||||||||||||||| |||
Sbjct 791 CAGCTTCTTCAGATACTTAACAAGATCAAGGCTTTACCTTTGCCTATGGATCTTGCCTCA 850
Query 1271 AAGTTGAACAATATTGGAAGTTTAGCCAGGAAAAATATGGATCACCCGAC-G-G-TGAAC 1327
|||||||||||||| |||| |||||||||| ||||| |||||| || | | | |||||
Sbjct 851 AAGTTGAACAATATCGGAATTTTAGCCAGGGAAAATCCGGATCAACCTTCCGCGATGAAC 910
Query 1328 CCACAAAAT-GATATGAATGGGGCTTCTCCT---TCTACCATGGACTTGCTTGCTGTTCT 1383
|| |||||| | ||||||||| |||||| || |||||||||||||| ||||||| |||
Sbjct 911 CCTCAAAATAG-TATGAATGGAGCTTCTTCTCCATCTACCATGGACTTACTTGCTGCTCT 969
Query 1384 TTCGACGACATTAGGTTCATCTTCACCTGATGC-ACTAGCGATATTATCTCAAGGTGGGT 1442
||| | || |||||||||||| | || || || | |||| | ||||||||||| ||||
Sbjct 970 CTCGGCAACTTTAGGTTCATCTGCTCCCGAGGCCA-TAGCTTTTTTATCTCAAGGAGGGT 1028
Query 1443 TTGGTAACAAAGACAGCGA-GA-AG-ACTAAGTTATCGTCTTATGAAAATGGTGTTACAA 1499
||||||||||||| | | | || || ||||||||| | |||| ||| | || |||||||
Sbjct 1029 TTGGTAACAAAGAAAACAATGATAGTACTAAGTTAACTTCTTCTGACCACGGCGTTACAA 1088
Query 1500 CCAACT-TGGAAAAGAGAACTTTTGG-GTTTTCTTCTGTTGGG-G-G-AGAGAGGAGCA- 1553
|||| | | |||||||||||||| || |||| ||||| ||||| | | |||||||| ||
Sbjct 1089 CCAA-TGTAGAAAAGAGAACTTT-GGAGTTTCCTTCTTTTGGGAGAGGAGAGAGGA-CAA 1145
Query 1554 GTAGCAGTAACCAATCTCCTTCTCAGGATTCTGACTCACGTGGTCAAGACACTAGGTCTA 1613
|||||||||| || ||||||||||||||||| || ||||| ||||| ||||| || ||||
Sbjct 1146 GTAGCAGTAAACATTCTCCTTCTCAGGATTCAGATTCACGCGGTCAGGACACGAGATCTA 1205
Query 1614 GCTTGTCTCTACAACTATTCACCTCATCACCCGAGGATGAGAGTCGACCGACAGTAGCAT 1673
|||| ||| |||||||||||||||| ||||| ||||||||||||| ||| ||||| ||||
Sbjct 1206 GCTTATCTTTACAACTATTCACCTCTTCACCAGAGGATGAGAGTCAACCAACAGTTGCAT 1265
Query 1674 CTTCTAGAAAGTATTATTCTTCTGCCAGCAGTAATCCTGTGGAGGATAGATCACCATCTT 1733
|||| | |||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct 1266 CTTCAACAAAGTATTATTCTTCTGCGAGCAGTAACCCTGTTGAGGATAGATCTCCATCAT 1325
Query 1734 CTTCTCCGGTCATGCAGGAGTTATTCCCCTTGCAGGCATCCCCTGAAACCATGAGGTCCA 1793
| ||||||||| |||| ||||| ||||| ||||| | || |||| ||||| |||||| |
Sbjct 1326 CGTCTCCGGTCGTGCAAGAGTTGTTCCCTTTGCATACTTCTCCTGGAACCAGGAGGTCTA 1385
Query 1794 AGAATCATAAAAACTCAAGTCCCA------GGACTGGTTGCTTGCCCCTTGAGCTCTTTG 1847
| ||| | |||||| | ||||||| |||| |||| |||||||| ||||||||||
Sbjct 1386 ACAATTACAAAAACACTAGTCCCATCCCCAGGACCAGTTGTTTGCCCCTAGAGCTCTTTG 1445
Query 1848 GTGCATCGAATAGAGGAGCT---GCAGATCCTAACTTTAAAGGTTTCG-GGCAACAGTCT 1903
||||||| || ||||||||| ||| ||||||| || || ||||| |||| || |||
Sbjct 1446 GTGCATCAAACAGAGGAGCTACTGCAAATCCTAA-TTCCAATGTTTCTAGGCATCAATCT 1504
Query 1904 GGTTATGCTTCTTCTGGCTCTGACTACTCTCCTCCTAGCTTAAACTCTGATGCTCAGGAC 1963
||||||||||| ||||| || || || |||||||||||||||||||||||||||||||||
Sbjct 1505 GGTTATGCTTCATCTGGTTCGGATTATTCTCCTCCTAGCTTAAACTCTGATGCTCAGGAC 1564
Query 1964 CGCACTGGAAAGAT-AGTCTTT-AAACTACTTGATAAAGATCCAAGTCAGCTCCCTGGGA 2021
||||| |||||||| | | ||| |||||| |||| |||||||| |||||||||||||| |
Sbjct 1565 CGCACCGGAAAGATCA-T-TTTCAAACTATTTGAAAAAGATCCTAGTCAGCTCCCTGGCA 1622
Query 2022 C-TCTACGATCTGAGATCTATA-ACTGGCTTTCGAACATTCCATCAGAAATGGAGAGTTA 2079
| | | ||| | ||||| |||| | |||||||| | | ||||||||||||||||||||||
Sbjct 1623 CAT-TGCGAACCGAGATTTATAGA-TGGCTTTCTAGCTTTCCATCAGAAATGGAGAGTTA 1680
Query 2080 TATCAGGCCTGGCTGTGTTGTTCT-ATCTGTTTATGTAGCAATGTCACCTGCAGCCTGGG 2138
|||||||||||| |||||| | || |||||| ||||| ||||||||| || | || ||||
Sbjct 1681 TATCAGGCCTGGTTGTGTTAT-CTTATCTGTCTATGTGGCAATGTCAGCTTCTGCTTGGG 1739
Query 2139 AACAACTTGAGCAAAAATTGCTGCAACGGCTTGGTGT-TTTGCTACAAAATTCTCCTTCT 2197
||||||| ||| |||| || ||||||||| || || | |||| | ||| ||||
Sbjct 1740 AACAACTCGAGGAAAATTTACTGCAACGGGTTAGT-TCTTTGGTTCAAGATTCA------ 1792
Query 2198 GATTTTTGGAGAAACGCAAGATTTATAGTTAACACGGGAAGACAACTCGCATCACACAAA 2257
||||||||||| || |||||||| | || || || || ||||| |||||||||||||||
Sbjct 1793 GATTTTTGGAGGAATACAAGATTTTTGGTCAATACAGGCAGACAGCTCGCATCACACAAA 1852
Query 2258 AATGGTA-AAGTTCGA-TGTAGCAAATCTTGGAGAACTTGGAATTCACCAGAGCTCATCT 2315
| |||| || |||| || ||||||||||||||||||| |||||||||||| || |||
Sbjct 1853 CACGGTAGAA-TTCGTCTG-AGCAAATCTTGGAGAACTTTGAATTCACCAGAACTGATCA 1910
Query 2316 CAGTGTCACCTGTAG-CTGTGGTAGCTGGTGAAGAAACAAG-TTTGGTTGTAAGAGGTAG 2373
| ||||| || || | |||| ||||| |||||||||||| | |||| | ||||| |||||
Sbjct 1911 CGGTGTCGCC-GTTGGCTGTTGTAGCCGGTGAAGAAACA-GCTTTGATAGTAAGGGGTAG 1968
Query 2374 AAGCTTGACGAATGATGGAATCAGTA-TTCGTTGCACACATATGGGTAGCTACATGGCAA 2432
|| |||||| ||||| ||||| || | |||||||| |||||||||||| ||||| | |||
Sbjct 1969 AAACTTGACCAATGACGGAATTAG-ACTTCGTTGCGCACATATGGGTAACTACACGTCAA 2027
Query 2433 TGGAGGTAACCAGGG-CAGTGTGTAGACAAACCATATTTGACGAGTTGAATGTAAATAGT 2491
| |||||||| || ||| ||| | ||| | |||||| ||||| || || | ||||
Sbjct 2028 TAGAGGTAACT-GGAACAGAACATAGGCGAACAAAATTTGATGAGTTAAACGTTAGTAGT 2086
Query 2492 TTCAAAGTCCAAAATGTACA-CCCTGGTTT-TCTTGGACGCTGTTTCATTGAGGTGGAGA 2549
||||||||||| | || | | ||||| ||| ||| |||||||||||||||||||||||||
Sbjct 2087 TTCAAAGTCCAGAGTGCA-AGCCCTG-TTTCTCTAGGACGCTGTTTCATTGAGGTGGAGA 2144
Query 2550 ATGGATTCAGGGGTGACAGTTTTCCATTGATAATTGCCAATGC-ATCCATCTGCAAAGAG 2608
|||||||||| ||||||| ||| || |||||||| |||||||| | | || |||||||||
Sbjct 2145 ATGGATTCAGAGGTGACAATTTCCCTTTGATAATAGCCAATGCCA-CGATTTGCAAAGAG 2203
Query 2609 TTGAATCGTCTCGGAGAAGAGTTTCACCCCAAAAGTCAAGATATGACAGAAGAGCAAGCG 2668
|||||| | || | ||| |||||||| || ||||| | |||| || ||| || | |
Sbjct 2204 TTGAATTGCCTTGAAGACGAGTTTCATCC-AAAAGACGTGATA-GAG-GAACAG-A--CA 2257
Query 2669 CAGAGCTCAAATCGTGGTCCCACATCAAGAGAAGAAGTT-TTGTGCTTCTTGAACGAGCT 2727
|||| || | ||||| || | |||||||||||||||| || ||||||||||| |||||
Sbjct 2258 CAGAACTTAGATCGT---CCAAGATCAAGAGAAGAAGTTATT-TGCTTCTTGAATGAGCT 2313
Query 2728 TGGTTGGCT-TTTCCAGAAGAA-TCAGACCTCTGAGCTTCG-GGAACAATCTGACTTTTC 2784
|||||||| |||| ||| ||| | ||| || || ||| ||| |||||||||||||
Sbjct 2314 CGGTTGGCTATTTC-AGAGGAAATG-GACATCCGATATTCATGGAG-AATCTGACTTTTC 2370
Query 2785 CCTTGCCCGCTTCAAGTTTTTGCTAGTTTGCTCAGTTGAAAGAGATTACTGTGCTCTCAT 2844
||| |||||||||| |||||||| || ||||| ||||||||||||| |||| |||||||
Sbjct 2371 TCTTCCCCGCTTCAAATTTTTGCTTGTATGCTCTGTTGAAAGAGATTGCTGTTCTCTCAT 2430
Query 2845 CAGAAC-GCTCCTCGACATGTTAGTAGAGAGAAATTTGGTGAAT-GATGAG-CTGA--A- 2898
||||| | |||| || ||| | |||||||||||||||| ||| |||| | |||| |
Sbjct 2431 AAGAACTG-TCCTGGATATGATGGTAGAGAGAAATTTGG-GAAAAGATG-GTCTGATGAA 2487
Query 2899 CAGAGAAGCCCTG-GATATGCTTGCTGAGATTCAGTTGTTGAATCGTGCTGTTAAGAGGA 2957
|| || || ||| |||||||| ||||||| |||| | |||||||| ||||| || ||||
Sbjct 2488 CA-AGGAGTCCTTAGATATGCTGGCTGAGACTCAGCTATTGAATCGCGCTGTCAAAAGGA 2546
Query 2958 -AAAGCACAAAAATGG-TCGAA-CTACTCATTCATTAC-CTGGTTAACCCCTTGACACTC 3013
||| |||||||||| | ||| | || ||||||||| | | |||| || | | |
Sbjct 2547 GAAAT-ACAAAAATGGCT-GAAACG-CTGATTCATTACTCCG-TTAATCCGT---C--T- 2596
Query 3014 AGTTCCTCCAGAAAGTTCGTTTTCTTACCTAATATAACTGGACCTGGCGGTATCACACCT 3073
| | | | ||| ||| | ||||| |||||||| |||||||||| | ||||||||||
Sbjct 2597 A---C-TA-A-AAACTTCATCTTCTTGCCTAATATCGCTGGACCTGGTGATATCACACCT 2650
Query 3074 TTACATCTAGCTGCATGTACATCTGGTTCAGATGATATGATTGATCTACTCACCAATGAT 3133
|| ||| | ||||| | ||||||||||| ||||||||||||||| |||| || ||||||
Sbjct 2651 TTGCATTTGGCTGCTTCCACATCTGGTTCTGATGATATGATTGATGTACTGACTAATGAT 2710
Query 3134 CCACAAGAGATTGGATTATCGAGCTGGAACACTCTTCGC-GATGCAACCGGGCAAACTCC 3192
|||||||||||||||||||| | ||||| || || | |||||| ||||||| |||||
Sbjct 2711 CCACAAGAGATTGGATTATCTTGTTGGAATACCCTA-GTTGATGCATCCGGGCAGACTCC 2769
Query 3193 ATACAGCTACGCTGCAATAAGGAACAACCATAACTATAACTCATTGGTGGCTCGTAAACT 3252
|| || || |||||||| || |||||||| | || ||| | ||||||| |||||||||
Sbjct 2770 ATTTAGGTATGCTGCAATGAGAAACAACCACAGTTACAACACCTTGGTGGGTCGTAAACT 2829
Query 3253 TGCAGACAAAAGAAACAAGCAAGTCTCACTAAACATCGAGCACGAGGTAGTTGACCAAAC 3312
|||||| ||||||||| |||| | || || ||||| || | | || | | || || |
Sbjct 2830 TGCAGATAAAAGAAACGGGCAAATATCTCTGAACATTGAAAATG-GG-A-TCGATCAGAT 2886
Query 3313 CGGTCTGAGCAAGAGATTAAGTTTAGAGATGAACAAGTCATCATCATCTTGTGCCTCGTG 3372
|||||||| |||||| |||| | |||| | || | | | ||| | | | | | ||
Sbjct 2887 TGGTCTGAGTAAGAGACTAAGCTCAGAGCT-AA-A-G--AG-ATC-T-T-GCAACACATG 2937
Query 3373 TGCAACG-GTGGCTTTGAAGTATCA-AAGGAGAGTTTC-AGGTTCACAACGTTTGTTCCC 3429
||||| | |||||| | |||||||| ||| || ||||| || ||||| |||||||||||
Sbjct 2938 TGCAA-GTGTGGCTCTAAAGTATCAGAAGAAG-GTTTCGAG-TTCACGTCGTTTGTTCCC 2994
Query 3430 AACTCCTATCATTCACTCAATGCTTGCGGTTGCAACGGTCTGCGTTTGCGTCTGCGT-TT 3488
|||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||
Sbjct 2995 AACTCCGATCATCCACTCGATGCTTGCTGTTGCGACAGTCTGCGTTTGCGTCTGCGTGTT 3054
Query 3489 TCATGCATGCTTTCCCAATCGTCAGACAAGGGTCTCACTTCAGTTGGGGAGGT-TTGGAT 3547
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||
Sbjct 3055 T-ATGCATGCTTTCCCAATCGTCAGACAAGGCTCTCACTTCAGTTGGGGTGGTCTTG-AT 3112
Query 3548 TATGGCTCAATCTA 3561
|| || ||||||||
Sbjct 3113 TACGGTTCAATCTA 3126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151735543551
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5