BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20990.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911943 jgi|Araly1|911943|Al_scaffold_0001_2197 1410 0.0
> Ahg911943 jgi|Araly1|911943|Al_scaffold_0001_2197
Length=969
Score = 1410 bits (763), Expect = 0.0
Identities = 903/970 (93%), Gaps = 11/970 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGAACCAAATCCATAGTCATCAATTCCAATTCCAAGAACGATACTTCCACCATT 60
|||||||||| |||||||||||||||||||||||| |||| |||| |||||||||| |
Sbjct 1 ATGATGAGAAGCAAATCCATAGTCATCAATTCCAACTCCAGGAACAATACTTCCACTGTC 60
Query 61 TCCGCAACGACAGCTCTGAGACGTTCGGCCTCAAACACTACCCCCTCAGCTGCAGTGGTA 120
|||||||||||||||| |||||||||||||||||||||| | || |||| | ||||||
Sbjct 61 GCCGCAACGACAGCTCTAAGACGTTCGGCCTCAAACACTATCGCCGCAGCCCCGGTGGTA 120
Query 121 CGCACAAATGATCTTAACAAAAAACCGCGACCTCGGTCAGTAGAGTTCCCGGCATCTCCT 180
|||||||||||||||||||||| ||| ||||| ||||||||||||||||| | |||||||
Sbjct 121 CGCACAAATGATCTTAACAAAACACCCCGACCCCGGTCAGTAGAGTTCCCTGTATCTCCT 180
Query 181 CAACTAG-TACAAGGTGAAGAGATGGTCCATTTCGGACATCCCCAACACGTGTTGGTTAA 239
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 181 CAACT-GATACAAGGTGAAGAGATGGTCCATTTCGGACATCCCCAACACGTGCTGGTCAA 239
Query 240 AGTTGAGTTGCCGGATATTTACACGTGCGCAGGGTGCAAAGAAGAGGGAGCAGGGGTTAG 299
|||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 240 AGTTGAGTTGCCGGATATCTACACGTGTGCTGGGTGCAAAGAAGAAGGAGCAGGGGTTAG 299
Query 300 GTACGTGTGTCAAGAATGTGATTATCAGCTCCATGAGTTTTGTGCTTTGGCTCCTCCTCA 359
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GTATGTGTGTCAAGAGTGTGATTATCAGCTCCACGAGTTTTGTGCTTTGGCTCCTCCTCA 359
Query 360 ACTCAAATCACACCCTTTTCATTACCAGCATCAACTTCTCTTCTTTGCCAAACCTGCGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTCAAATCACACCCTTTTCATTACCAGCATCAACTTCTCTTCTTTGCCAAACCTGCGAA 419
Query 420 AGGAGGGATAGTAAAATCGAAATGTGACGTGTGTGGAAGATCACCAAAAGGTTACACTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAGGGATAGTAAAATCGAAATGTGACGTGTGTGGAAGATCACCAAAAGGTTACACTTT 479
Query 480 CAGATGCAAAGCTTGCAGTTTCCAAATGCATCCTGGCTGCGCCATGTTAtctccttccct 539
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 480 TAGATGCAAAGCTTGCAGTTTCCAAATGCATCCTGGCTGCGCCATGTTGCCGCCTTCTCT 539
Query 540 ctcctcttcctccctccatcaccaccctctccgcctcctcccctcttcctcAGCAGGTAG 599
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CTCCTCCTCCTCCCTCCACCACCACCCTCTCCGCCTCCTCCCCTCTTCCTCACCAGGTAA 599
Query 600 CACCACCGGCGGAGACTCCGGAGGATTCCTCTGCGGAGAGTGCAAGAGAGGTAAGCGAAC 659
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATCACCGGGGGAGATTCCGGAGGATTCCTCTGCGGAGAGTGCAAGAGAGGTAAGCGAAC 659
Query 660 GGGGAGGGTTTACCGTTGCACCGTCTGTGATTACCACTTGCATGCCGTTTGTGCCAAAGA 719
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 660 GGGGAGGGTTTACCGTTGCACCGTCTGCGATTATCACTTGCATGCCGTTTGTGCCAAAGA 719
Query 720 CGCCGCCGTGAATGGCCTCCGAGCAAACGGACATAAAGGGAGGGATAAGTCTCCGGCAGT 779
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 720 CGCCGCCGTCAACGGCCTCCGAGCAAACGGACATAAGGGGAGGGATAAGTCTCCGGCGGT 779
Query 780 TTTGGGAACGGCGGCAAGGTTGGCGTCGCAGGTTGTGATTGATTTTCTCGGTGGTATTAT 839
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 780 TTTGGGAACGGCGGCCAGGTTGGCGTCGCAGGTTGTTATTGATTTTCTCGGTGGTATAAT 839
Query 840 CGATGGTCTTGGCGAAGGTGTTGGTGAAGCTATTATAGACGGTGTGACTAGAGGTGGTGG 899
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGATGGTCTCGGTGAAGGTGTTGGTGAAGCTATTATAGACGGTGTGACTAGAGGTGGTGG 899
Query 900 TGGTGG---CGG------AGGCGGAAATGGCGGTGGCACTAGAGTAATCCCACGTGTCAG 950
|||||| ||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 900 TGGTGGTGGCGGCCGCGGAGGCGGAAATGGCGGTGTTACTAGGGTAATACCACGTGTCAG 959
Query 951 AGGAGGGTAA 960
||||||||||
Sbjct 960 AGGAGGGTAA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5