BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21010.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921071 jgi|Araly1|921071|scaffold_102352.1 963 0.0
Ahg476818 jgi|Araly1|476818|fgenesh2_kg.2__1948__AT1G76600.1 261 6e-69
> Ahg921071 jgi|Araly1|921071|scaffold_102352.1
Length=664
Score = 963 bits (521), Expect = 0.0
Identities = 622/669 (93%), Gaps = 14/669 (2%)
Strand=Plus/Plus
Query 63 AATTTGTTATCTCAATCAAAAATGGGAATCTGTGTGTCGTTTCGTCGGGAAGATTCAAAT 122
||||||||| ||||||| |||||||||||||||||||||||| |||| |||| ||||||
Sbjct 1 AATTTGTTACCTCAATC-AAAATGGGAATCTGTGTGTCGTTTAATCGGAAAGACTCAAAT 59
Query 123 TCTTCACCGACGGTGAAGATCGTGACGGTTAACGGCGATCTCCGTGAATACAATGTTCCG 182
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 TCTTCGCCGACGGTGAAGATCGTGACGGTTAACGGCGATCTACGTGAATACAATGTTCCG 119
Query 183 GTGATAGCATCTCAAGTTTTGGAAGCTGAATCAGCGGCAGCTTATTCATCTTCGTCTTCC 242
|||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 120 GTGATAGCATCTCAAGTTTTGGAAGCTGAATCGGCGGCAG---------CTTCGTCTTCC 170
Query 243 TCTAGACCTTCTTCATATTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATA 302
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTAGATCTTCTTCTTATTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATT 230
Query 303 CCGGCGATCAAATCGGAAGAGCCGCTTCAGGCGGACCAGATCTACTTCGTTCTCCCGATT 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 231 CCGGCGATCAAATCGGAAGAACCGCTTCAGGCGGACCAGATCTACTTCGTTCTTCCGATT 290
Query 363 TCTAAACGTCAGAGTCGTTTAACGGCGTCGGATATGGCGGCTCTCGCCGTTAAAGCAAGC 422
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 291 TCTAAACGTCAGAATCGTTTAACGGCGTCGGACATGGCGGCTCTCGCCGTTAAAGCGAGC 350
Query 423 GTCGCGATACAAAACTCTGTTAAGAAAGAATCTCGTCGGCGTAAGAAGGTGAGAATCTCT 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 351 GTCGCGATACAAAACTCTGTTAAGAAAGAATCTCGTCGGCGAAAGAAGGTGAGAATCTCT 410
Query 483 CCGGTTATGATGTTGACGGGGTCTAACGATTCCGTTAACGGAAATGGAAGTGAAACGACA 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CCGGTTATGATGTTGACGGGGTCTAACGATTCCGTTAACGGAAATGGAAGTGAAACGACG 470
Query 543 GTTAAAAAGGGACGGCCGTTTGTGAGTAAAACTGCGCCGGTTAAAGCTTCGAGTGGG-AT 601
||||| |||||||||||||| | |||||||||||||||| |||||||||| ||||| ||
Sbjct 471 GTTAAGAAGGGACGGCCGTTAGAGAGTAAAACTGCGCCGTTTAAAGCTTCAAGTGGTTAT 530
Query 602 AAACCGGTCCGGTTCGGTTCGTAATTTGAGAAGATACACTTCTAAACGAGCTAAGCTGGC 661
|| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 531 AA-CCGGTCCGGTTCGGTTCGTAATTTGAGGAGATACACGTCTAAGCGAGCTAAGCTGGC 589
Query 662 GGTTCGATCTTTCAGGCTAAAACTTTCAACCATCTACGAAGGCTCCGTCGTTTAGATCGT 721
|||||||||||| ||||| |||||||| || ||||||||||||||||||||||| || |
Sbjct 590 GGTTCGATCTTTTAGGCTGAAACTTTCGACGATCTACGAAGGCTCCGTCGTTTAAAT--T 647
Query 722 TAttttttt 730
||||| |||
Sbjct 648 TATTTATTT 656
> Ahg476818 jgi|Araly1|476818|fgenesh2_kg.2__1948__AT1G76600.1
Length=839
Score = 261 bits (141), Expect = 6e-69
Identities = 303/379 (80%), Gaps = 20/379 (5%)
Strand=Plus/Plus
Query 130 CGACGG-TGAAGATCGTGACGGTTAACGGCGATCTCCGTGAATACAATGTTCCGGTGATA 188
|||||| | || |||||||| ||||||||||||||||||||||| |||| |||||| ||
Sbjct 50 CGACGGCT-AAAATCGTGACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTA 108
Query 189 GCATCTCAAGTTTTGGAAGCTGAATCAGCGGCAG-CTTATTCATCTTCGTCTTCCTCTAG 247
|||||||| ||| ||||| |||||| || | | ||| |||||| |||||||||||| |
Sbjct 109 GCATCTCAGGTTCTGGAATCTGAAT---CGAC-GTCTTCTTCATCATCGTCTTCCTCTCG 164
Query 248 ACCTTCTTCATA-TTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATACCGG 306
| ||||||| || |||| | || |||| ||||||||||||||||||||||| || ||||
Sbjct 165 ATCTTCTTCTTATTTTC-TATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCGG 223
Query 307 CGATCAAATCGGAAGAGCCGCTTCAGGCGGACCAGATCTACTTCGTTCTCCCGATTTCTA 366
|||| |||| || ||| ||||| ||||| || ||||| |||||||| || || ||||
Sbjct 224 CGATTGAATCTGATGAGATTCTTCAAGCGGATCAAATCTATTTCGTTCTTCCAATCTCTA 283
Query 367 AACGTC-AGAGTCGTTTAACGGCGTCGGATATGGCGGCTCTCGCCGTTAAAGCAAGCGTC 425
|||| | | | ||| | |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 284 AACGACAATA-CCGTCTCTCGGCGTCGGATATGGCGGCTCTCGCCGTGAAAGCCAGCGTC 342
Query 426 GCGATACA-AAA-CT-CTGTTAAGAAAGAATC-TCGTCGGCGTAAGAAG-GTGA-GAATC 479
||||| | ||| | | | |||||| |||| |||||| | ||| || | || ||||
Sbjct 343 GCGATTGAGAAATCAGCGGGGAAGAAA-AATCGTCGTCGTAG-AAGCAGCG-GAAGAATA 399
Query 480 TCTCCGGTTATGATGTTGA 498
|| |||||| ||| |||||
Sbjct 400 TCGCCGGTTGTGACGTTGA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5