BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21050.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921072 jgi|Araly1|921072|scaffold_102353.1 1118 0.0
> Ahg921072 jgi|Araly1|921072|scaffold_102353.1
Length=776
Score = 1118 bits (605), Expect = 0.0
Identities = 712/763 (93%), Gaps = 9/763 (1%)
Strand=Plus/Plus
Query 76 AAACAAATCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATAACTATCACCAC 135
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 13 AAAAAAATCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATCACTATCAACAC 72
Query 136 ATGCAAATCATAACCACTCCTACCTCCGTGGATTGTTCTCGCGAATTCCGTCACCGACGA 195
|||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 73 ATGCAATTCATAACCACTCCGACCACCGTCGATTGTTCTCGCGAATTCCGTCACCGACGA 132
Query 196 ACACTTCGTTCACTCATCGAATGCATGATTCCATACTGTTGCACTTACCAACAACAACCA 255
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 133 ACACTCCGATCACTCATCGAATGCATGATCCCATACTGTTGCACTTACCAACAACAGCCT 192
Query 256 TACCAAAACGACACCCTTTCAGTCTCTTCCACTTCATCCTCGTCTTCATCCTCAGACCAC 315
|||||||||||||| |||||||||||| | | || | || ||||| ||||||||||||
Sbjct 193 TACCAAAACGACACTGTTTCAGTCTCTT-C-C-TC-T--TCCTCTTCCTCCTCAGACCAC 246
Query 316 TC-T--TCCTCCTCCCAGAGTAGCAGTACCGTAAGTGGAACTTTCTTCGGACACCGTCGT 372
|| | |||||||||||||||| ||| | ||||||||||||||||||||| |||||||||
Sbjct 247 TCTTCCTCCTCCTCCCAGAGTAACAGCATCGTAAGTGGAACTTTCTTCGGCCACCGTCGT 306
Query 373 GGCCGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTGCTCCTCCTC 432
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 307 GGCAGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTTCTCCTCCTT 366
Query 433 GAGCTAGCTGTTCCTACGGCAGCTTTAGCCAAAGAAATGGACGAGGAAGGTGTTCTACGC 492
|||||||||||||| ||||| || |||||||| ||||||||||||| |||||||||||||
Sbjct 367 GAGCTAGCTGTTCCCACGGCTGCGTTAGCCAAGGAAATGGACGAGGCAGGTGTTCTACGC 426
Query 493 ATAGCCCTCGAGTGTGACCGTCGTAGAAGCAGCAATAGTCGTTCGTCTTCGATCTTTGAT 552
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 427 ATAGCCCTAGAGTGTGACCGTCGTAGAAGCAGCAACAGTCGTTCGTCGTCGATCTTTGAT 486
Query 553 GTTCCTGTTTGGTCTATGTTTTGTAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 612
|||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 487 GTTCCTGTGTGGTCGATGTATTGCAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 546
Query 613 GTGACGGAGAACGACGCCGTTTTCTTGAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 672
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 547 GTGACGGAGAACGACGCCGTTTTCTTAAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 606
Query 673 GTGGTGCCGTCGGAAGAGGAGGATCAGATGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 732
|| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 607 GTTGTGCCGTCGGAAGAGGAGGAGCAGACGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 666
Query 733 ACTGGTTCGAGTGACTCGGAATCGTTTCACATGATGAATCCGGGTGGTAGTTATGGACAA 792
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 ACTGGGTCGAGTGACTCGGAATCGTTTCATATGATGAATCCGGGTGGTAGTTATGGACAA 726
Query 793 GAGCTTAGTATATTTCTTTTGCGATCGTGAAATTAAGTACGGT 835
||||||||||||||||||||| |||||||||||||||||||||
Sbjct 727 GAGCTTAGTATATTTCTTTTGAGATCGTGAAATTAAGTACGGT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5