BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21060.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472343 jgi|Araly1|472343|fgenesh2_kg.1__2297__AT1G21060.1 2362 0.0
Ahg476820 jgi|Araly1|476820|fgenesh2_kg.2__1950__AT1G76620.1 510 1e-143
> Ahg472343 jgi|Araly1|472343|fgenesh2_kg.1__2297__AT1G21060.1
Length=1518
Score = 2362 bits (1279), Expect = 0.0
Identities = 1441/1519 (95%), Gaps = 11/1519 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGTCTCTGTTCTCCTTCTCCTTCTTCTCACGATTGTTCTTCATCTTCTCCAAGG 60
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGATGGGTCTCTGTTCTCCTTCACCTTCTTCAAACGATTGTTCTTCATCTTCTCCAAGG 60
Query 61 AACTCGGAGAAGAAGCAGAATGTGATTGTTGCATCACCTTCAAGATTCTCTACCT---AC 117
|||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AACT-GG-G-AGAAGCAGAATGTGATTGTTGCATCACCTTCAAGATTCTCTACCTACAAC 117
Query 118 ACTAAACCGAGTTTATCAATTGAGAAGAGATTACTTACTTACCAGGATTCTAATTGCAAC 177
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 118 ACTAAACCGAGTTTATCAATAGAGAAGAGATTACTAACTTACCAGGATTCTAATTGCAAC 177
Query 178 GTTACGCCAAAGTCTTCAGAAGATTTGAGGAAAGAAATTGCTTCACTTGAGTTTGAGATT 237
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATTATGCCAAAGTCTTCAGAAGATTTGAGGAAAGAAATTGCTTCACTTGAGTTTGAGATT 237
Query 238 CTGCGTACAGAACAATATCTGCTCTCTCTGTATAGGACAGCTTTCGATGAACAAGTTTCT 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 CTGCGTACAGAACAATATCTGCTCTCTCTTTATAGGACAGCTTTCGATGAACAAGTTTCT 297
Query 298 TCTTTTTCTCCTCACACTGAAACAAGCTTAGTTTCTAATCAGTTTT-TACCCAAATCCGA 356
||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 298 TCTTTTTCTCCCCACACTGAAACAAGCTTAGTGTCTAATCAGTTTTGT-CCCAAATCCGA 356
Query 357 GCAATCAGATGTTACCAGTGTGTTCAGCTACCATTATCAAGCTTCTCCGGCCTCTGAATG 416
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GCAATCTGACGTTACCAGTGTGTTCAGCTACCATTATCAAGCTTCTCCAGCCTCTGAATG 416
Query 417 TTCCTCTTTGTGTCCTCCTCGGAGTTTCCAAGCCAGCTTAAAAGCTTTGTCTGCAAGAGA 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCCTCTTCGTGTCCTCCTCGGAGTTTCCAAGCCAGCTTAAAAGCTTTGTCTGCAAGAGA 476
Query 477 GAAGAGTAGATATGTT-T--CTAGTAGTCACACTACTCTTGGAGATCTTCTGGGTTCTAC 533
|||||||||||||||| | || ||| ||||||||||||||||||||||||||||||| |
Sbjct 477 GAAGAGTAGATATGTTGTTTCTGGTAATCACACTACTCTTGGAGATCTTCTGGGTTCTTC 536
Query 534 TCTTATCGTAGATAACATTGCGAATCCGAGTAGGCTCTCTGAAGATATCTTAAGATGCAT 593
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 537 GCTTATCGTAGATAACATTGTGAACCCGAGTCGGCTCTCTGAAGATATCTTAAGATGCAT 596
Query 594 ATGTTCTGTATATTGTACACTCTCCAGCAAAGCCAGAATCAATTCTTGTCTTCAGGCTTC 653
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 597 ATGTTCTGTATATTGTACACTCTCCAGCAAAGCCAGAACCAGTTCTTGTCTTCAGGCTTC 656
Query 654 TCCTTCTTCACCTTCATCTGTCTCTTCCAAAGCCACTTTTGATAGCTTGAACTCGCGCCA 713
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 657 TTCTTCTTCACCTTCATCTGTCTCTTCCAAAACCACTTTTGATAGCTGGAACTCGCGTCA 716
Query 714 TGAGGAACGCAAAGAAGCAAATGTGCCAGGCGTTGTTGTAATAGAATCTCTAGAACTTCA 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CGAGGAACGCAAAGAAGCAAATGTGCCAGGCGTTGTTGTAATAGAATCTCTAGAACTTCA 776
Query 774 CTTGGATGATGGTAGTTTCAATCACGCTGCTGTTATGCTCCAAAACTTCAGATCACTAGT 833
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 CCTGGATGATGGTAGTTTCAATCACGCTGCTCTTATGCTCCAAAACTTCAGATCACTAGT 836
Query 834 TCAAAAACTTGAGAAGGTTGATCCGAGTAGAATGAAACGCGAAGAGAAGCTAGCGTTTTG 893
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 837 TCAAAAGCTTGAGAAGGTTGATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCATTTTG 896
Query 894 GATAAACATTCACAATGCCCTCACAATGCATGCGTATCTAGCCTACGGAACTCACAACCG 953
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 897 GATAAACATTCACAATGCCCTCACAATGCATGCCTATTTAGCCTACGGAACTCACAACCG 956
Query 954 TGCCAGAAACACCTCGGTTTTAAAGGCAGCTTATGATGTTGGAGGCTATAGCGTAAACCC 1013
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 957 TGCCAGAAACACCTCGGTTTTAAAGGCAGCTTATGATGTTGGAGGCTATCGTGTAAACCC 1016
Query 1014 TTACATTATCCAAAGCTCAATCTTAGGCATTCGCCCACATTTTTCACAACCTTTGTTGCA 1073
|||||| |||||||||||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct 1017 TTACATAATCCAAAGCTCAATCTTAGGCATTCGTACGCATTTCTCACCACCTTTGTTGCA 1076
Query 1074 GACATTGTTTTCGCCATCAAGAAAGTCGAAAACTTGTAATGTCAAACACATTTACGCCTT 1133
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 GACATTGTTTTCACCATCAAGAAAGTCGAAAACTTGTAATGTCAAACACATATACGCCTT 1136
Query 1134 GGAATATCCCGAGGCATTGGCTCATTTTGCTCTTTCTTCAGGATTTTCTACTGATCCTCC 1193
||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 1137 GGAATATCCTGAGGCATTGGCTCATTTCGCTCTTTCTTCAGGAGCTTCTACAGATCCTCC 1196
Query 1194 GGTTCGGGTTTACACGGCAGATTGCGTATTCCGGGATCTAAGAAAATCCAAAGAAGAGTT 1253
||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1197 GGTTCGGGTTTACACAGCGGATTGCATTTTCCGGGATCTAAGAAAATCCAAAGAAGAGTT 1256
Query 1254 TATAAGAAACAATGTTCGTATACACAACGAGACAAAGATATTGTTGCCCAAGATTGTTCA 1313
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1257 TATAAGAAACAATGTTCGTATACACAATGAGACAAAGATATTGTTGCCCAAGATCGTTCA 1316
Query 1314 TTACTATGCTAAAGATATGTCACTGGAACCATCTGCCCTCATGGAAACAACGGTGAAGTG 1373
||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1317 TTACTATGCTAAAGACATGTCACTGGATGCATCTGCCGTCATGGAAACAACGGTGAAGTG 1376
Query 1374 TTTACCGGACTCCACGAAGAGAACAGCTCAGAAATTGTTGAAGAAGAAGAGCAGAAACAT 1433
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1377 TTTACCGGAATCCACGAAGAGAATAGCTCAGAAATTGTTGAAGAAGAAGTGCAGAAACAT 1436
Query 1434 TGAATATTCACCGGAAAACTCAAGTTTCCGTTATGTAATCATCCAGGAACCAACAACAAG 1493
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1437 AGAATATTCACCGGAAAACTCAAGTTTCCGTTATGTAATCATTGAGGAACCACCAACAAG 1496
Query 1494 AAGACATGATTCTACTATA 1512
|||||||||||||||||||
Sbjct 1497 AAGACATGATTCTACTATA 1515
> Ahg476820 jgi|Araly1|476820|fgenesh2_kg.2__1950__AT1G76620.1
Length=1970
Score = 510 bits (276), Expect = 1e-143
Identities = 601/754 (80%), Gaps = 38/754 (5%)
Strand=Plus/Plus
Query 745 GTTGTTGTAATAGAATCTC-TAGAACTTCACTTGGATGATGGTAGTTTCAATCACGCTGC 803
|||||||| ||||| ||| ||| | | || || || |||| ||||||| | |||||||
Sbjct 1068 GTTGTTGTGATAGAGGCTCTTAG-AGTACATTTAGACGATGCTAGTTTCGGTTACGCTGC 1126
Query 804 TGTTATGCTCCAAAACTTCAGATCACTAGTTCAAAAACTTGAGAAGGTTGATCCGAGTAG 863
| ||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 1127 TCTTATGCTGCAAAACTTCAGATCATTGGTTCAAAATCTTGAGAAAGTTGATCCGAGTAG 1186
Query 864 AATGAAACGCGAAGAGAAGCTAGCGTTTTGGATAAACATTCACAATGCCCTCACAATGCA 923
||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 1187 AATGAAACGCGAAGAGAAGCTCGCGTTTTGGATTAACATTCACAATGCTCTTGTGATGCA 1246
Query 924 TGCGTATCT-AGCCTACGGAACTCACAACCGTGCCAGAAACACCTCGGTTTTAAAGGCAG 982
||| || || ||| || |||||||||||||| || |||||||| |||||||| |||||||
Sbjct 1247 TGCTTA-CTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTTTGAAGGCAG 1305
Query 983 CTTATGATGTTGGAGGCTATAGCGTAAACCC-TTACATTATCCAAAGCTCAATCTTAGGC 1041
|||||||| ||||||||||||| ||||||| || || ||||||||||||||||||||
Sbjct 1306 CTTATGATATTGGAGGCTATAGAATAAACCCGTTT-ATCATCCAAAGCTCAATCTTAGGA 1364
Query 1042 ATTC-GCCCACATTTT---TCAC-A--ACCTTTGTTGCAGACAT-TGTTTTCGCCATCAA 1093
|| | | || |||| |||| | |||||| | || || | |||||||||| ||||
Sbjct 1365 AT-CAGACCTCATTACACATCACCATCACCTTTACTCCAAAC-TCTGTTTTCGCCTTCAA 1422
Query 1094 GAAAGTCGAAAACTTGTAATGTCAAACACATTTACGCCTTGGAATATCCCGAGGCATTGG 1153
|||||||||||||||| | ||| | |||| ||||||| |||||||| |||||||| || |
Sbjct 1423 GAAAGTCGAAAACTTGCAGTGTTAGACACGTTTACGCATTGGAATACCCCGAGGCTTTAG 1482
Query 1154 CTCATTTTGCTCTTTCTTCAGGATT-TTCTACTGATCCTCCGGT--T-CGGGTTTACACG 1209
||||||| ||| |||||||||| ||| ||||||||| |||| | ||||||||||||
Sbjct 1483 CTCATTTCGCTATTTCTTCAGGGGCATTC-ACTGATCCTACGGTAGTTCGGGTTTACACG 1541
Query 1210 GCAGATTGCGTATTCCGGGATCTAAGAAAATCCAAAG-AAGAGTTTATAAGAAACAATGT 1268
|| ||| | | ||||||||||||||| || | || | |||||| ||| |||| |||||
Sbjct 1542 GCGGATAGAATCTTCCGGGATCTAAGACAAGCTAA-GCAAGAGTATATCAGAAGTAATGT 1600
Query 1269 TCGTATACACAACGAGACAAAGATATTG-TTGCCCAAGAT-TGTTCATTACTATGCTAAA 1326
|||| | |||| | ||||||||| ||| ||||| ||||| | |||| | |||| ||||
Sbjct 1601 TCGTGTTTACAAAGGGACAAAGAT-TTGGTTGCCAAAGATCT-TTCAGCATTATGTTAAA 1658
Query 1327 GATATGTCACTGGAACCATCTGCCCTCATGGAAACAACGG-TGAAGTGTTTACCGGACTC 1385
|| |||||| |||| ||| ||||||||| |||| | | | ||||||||| || |
Sbjct 1659 GACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACAGCTCA-GTGTTTACCAGAAGC 1717
Query 1386 CACGAAGAGAACAGCTCAGAAATTGTT-GAAGAAGAAGA-GCAGAAACA-TT--GAATA- 1439
||| || || ||| |||||| ||| |||| |||||| | || || | || ||||
Sbjct 1718 TGCGAGGAAAATTGCTGAGAAAT-GTTTGAAGGAGAAGAAG-AGTAAGAATTTTGAATGG 1775
Query 1440 TTCACCGGAAAACTCAAGTTTCCGTTATGTAATC 1473
|| ||||||||| | |||||||| ||||| |||
Sbjct 1776 TT-ACCGGAAAATTTGAGTTTCCGATATGTCATC 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5