BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21065.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472344 jgi|Araly1|472344|fgenesh2_kg.1__2298__AT1G21065.1 1219 0.0
Ahg915974 jgi|Araly1|915974|Al_scaffold_0008_725 350 1e-95
Ahg900483 jgi|Araly1|900483|Al_scaffold_0004_1133 350 1e-95
Ahg896591 jgi|Araly1|896591|Al_scaffold_0005_557 339 3e-92
Ahg888092 jgi|Araly1|888092|Al_scaffold_0007_78 239 3e-62
Ahg891588 jgi|Araly1|891588|Al_scaffold_0007_3574 161 6e-39
> Ahg472344 jgi|Araly1|472344|fgenesh2_kg.1__2298__AT1G21065.1
Length=803
Score = 1219 bits (660), Expect = 0.0
Identities = 760/806 (94%), Gaps = 15/806 (2%)
Strand=Plus/Plus
Query 1 ATGGTGATGATGGTGAAAGTGAAAGGCCTTAttgggaggttttggtttggagttggaggt 60
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGGTGATGATGGTGAAAGTGAAAGGCCCTATTGGGAGATTTTGGTTTGGAGTTGGAGGA 60
Query 61 gggattgtgttggccattgttgttgttattattggGCTTAGAGGAACACAAAAAGCTAT- 119
|| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGAATTTTGTTGGCCATTGTTGTTGTTATTATTGGGCTTAGAGGAACACTAAAAGCTATG 120
Query 120 --GAGCTCGACGTTCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAGCTCGACGATCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 180
Query 178 CCAGCTAATCCGGCTACCGATAGAGCTTCAATGGCGAGTTCCTCTGGTGCTAAGTGGGCT 237
||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 CCAGCGAATCCAGCTACCGATCGAGCTTCAATGGCGAGTTCCTCTGGTCCTAAGTGGGCT 240
Query 238 CAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 300
Query 298 TTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 356
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 359
Query 357 ACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 416
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 419
Query 417 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 479
Query 477 TATGGAAGGTCCTGATGACATGCCAGCTCATATCAAGTCATCAATGTTTGGATGTCAACT 536
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CATGGAAGGTCCTGATGACATGCCAGCTCATATCAAATCATCAATGTTTGGATGTCAACT 539
Query 537 CACAATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGGGAATATGGCTCTG 596
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CACAATCCCAATAACAAAAGGCAAACTCAACATGGGAACTTGGCAGGGAATATGGCTCTG 599
Query 597 TGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAG 656
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAACACCGTGATGCTCCAACCGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAT 659
Query 657 ATGTCTCTTCACGTTAGATGGCTTGTAACCTCGTAATGTTTTAATAGATTTTTACAGTCT 716
|||| |||||| ||||||| |||||||||||||| | |||||||||||||| |||||||
Sbjct 660 ATGTTTCTTCATGTTAGATTGCTTGTAACCTCGTGGT-TTTTAATAGATTTT-ACAGTCT 717
Query 717 TGTAATGAAATTTGACTTTCTATATGA-A-A---C--C-ACTTTGTCCACATTTTGGTGT 768
||||||||||||||||||||||||||| | | | | |||||||||||||| ||||||
Sbjct 718 TGTAATGAAATTTGACTTTCTATATGAGACAATGCTGCCACTTTGTCCACATTGTGGTGT 777
Query 769 TTATTGCATCAGAAAAATCCATATTT 794
|||||||||||||||||| |||||||
Sbjct 778 TTATTGCATCAGAAAAATTCATATTT 803
> Ahg915974 jgi|Araly1|915974|Al_scaffold_0008_725
Length=216
Score = 350 bits (189), Expect = 1e-95
Identities = 208/217 (96%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 60
Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353
||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119
Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413
||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179
Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450
|||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216
> Ahg900483 jgi|Araly1|900483|Al_scaffold_0004_1133
Length=216
Score = 350 bits (189), Expect = 1e-95
Identities = 208/217 (96%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 60
Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353
||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119
Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413
||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179
Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450
|||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216
> Ahg896591 jgi|Araly1|896591|Al_scaffold_0005_557
Length=216
Score = 339 bits (183), Expect = 3e-92
Identities = 206/217 (95%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 GCTCAGAAAACCATCACACTTCCACGGCCACGTCGTGGATGTCATCTTATTACTCCAAAG 60
Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353
||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119
Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413
||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179
Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450
|||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216
> Ahg888092 jgi|Araly1|888092|Al_scaffold_0007_78
Length=330
Score = 239 bits (129), Expect = 3e-62
Identities = 142/148 (96%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 304 GAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTACAACA 362
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 106 GAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTGCAACA 164
Query 363 CACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 422
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 224
Query 423 GACTTTCTTGAACAGGATTGTTCCTGAG 450
||||||||||||||||||||||||||||
Sbjct 225 GACTTTCTTGAACAGGATTGTTCCTGAG 252
> Ahg891588 jgi|Araly1|891588|Al_scaffold_0007_3574
Length=255
Score = 161 bits (87), Expect = 6e-39
Identities = 91/93 (98%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 358 CAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT 417
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 88 CAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT 147
Query 418 ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450
|||||||||||||||||||||||||||||||||
Sbjct 148 ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 180
Score = 99.0 bits (53), Expect = 5e-20
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 233 GGGCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAA 292
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 24 GGGCTCAGAAAACCTTCACACTTCCGCCGCTACGTCGTGGATGTCATCTTATTACTCCAA 83
Query 293 AG 294
||
Sbjct 84 AG 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5