BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21070.1 Length=1663 Score E Sequences producing significant alignments: (Bits) Value Ahg921075 jgi|Araly1|921075|scaffold_102356.1 1770 0.0 Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1 1074 0.0 > Ahg921075 jgi|Araly1|921075|scaffold_102356.1 Length=1087 Score = 1770 bits (958), Expect = 0.0 Identities = 1038/1077 (96%), Gaps = 4/1077 (0%) Strand=Plus/Plus Query 331 AATCCAAATGGAGAAAG-CAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAG 389 ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 14 AATCCAAATGGAG-AAGACAGAGAACGAGAAGAAGCCATCGGCGGTATCTGACGTCGGAG 72 Query 390 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 73 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCGAATAAACAACTAATGT 132 Query 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTTA 509 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 133 CATCATCTGGTTTCGGCTTTAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTCA 192 Query 510 CTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCTC 569 |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 193 CTGCTCTCGTTGGTATGGTGTCAAACGCGACTGGTTTATCTGCATCTAAGCATGTTCCTC 252 Query 570 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 312 Query 630 GTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTTG 689 |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 313 GTCTCATGTTGAACTCTGTTGGTTTCTACCAGATTTCGAAATTGAGCATGATTCCGGTTG 372 Query 690 TTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 749 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 373 TTTGCGTGATGGAATGGGTACTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 432 Query 750 TCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGCCA 809 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 433 TCATGGTTGTGGTTGTAGGAGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGCCA 492 Query 810 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 552 Query 870 GTTCACTGCAGAAGAAATACTCGATCGGATCATTCGAGTTGCTGAGTAAGACAGCTCCAA 929 |||||||||||||||||||||| |||||||| || ||||||||||| || |||||||||| Sbjct 553 GTTCACTGCAGAAGAAATACTCAATCGGATCTTTTGAGTTGCTGAGCAAAACAGCTCCAA 612 Query 930 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 672 Query 990 TCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCGCAT 1049 ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 673 TCATTTCTACTTACAAGATGACTTATGGCGCAATGTTATGCATTCTTCTCTCCTGCGCAC 732 Query 1050 TGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCTCAT 1109 ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || | Sbjct 733 TGGCGGTTTTCTGCAACATTAGCCAATATCTCTGCATCGGCAGATTCTCCGCTACTTCCT 792 Query 1110 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCTTTG 1169 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 793 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACACTGGGATGGCTTATCTTTG 852 Query 1170 ATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGGTGA 1229 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 853 ATTCCGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCTGTGGTGGGAATGGTGA 912 Query 1230 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGATACCGCATGGTA 1289 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 913 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGACACCGCATGGTA 972 Query 1290 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1032 Query 1350 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATATAGCTCTATTCAAGAGAAA 1406 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1033 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATAAAGCT--ATTCAAGAGAAA 1087 > Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1 Length=1615 Score = 1074 bits (581), Expect = 0.0 Identities = 906/1063 (85%), Gaps = 21/1063 (2%) Strand=Plus/Plus Query 331 AATCCAAATGGAGAAAGCAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAGC 390 ||| |||||||||||| | |||| ||||||||| ||||||||| || |||||||| || Sbjct 284 AATTCAAATGGAGAAACCGGAGAGCGAGAAGAA---ATCGGCTGTTTCCGACGTCGGTGC 340 Query 391 ATGGGCTATGAACGTAA-CGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449 |||||||||||| |||| | ||||||||||| |||||||||||||||||||| || |||| Sbjct 341 ATGGGCTATGAATGTAATC-AGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCATGT 399 Query 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTC-TT 508 | || ||||| ||||| || |||| || |||||||| |||||||||||||| || | | Sbjct 400 CTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACTCTTACGGGATTTCACTTCGC-CGTC 458 Query 509 ACTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCT 568 ||||| || ||||||||||| || || || | || |||||||| ||||||||||||||| Sbjct 459 ACTGCACTTGTTGGTATGGTTTCAAACGCTTCGGGATTATCAGCTTCTAAGCATGTTCCT 518 Query 569 CTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTT 628 |||||||||||||| ||||||||| | |||||||||||||| || ||||||||||| || Sbjct 519 CTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCCATTGCTGCTATGAACTTC 578 Query 629 AGTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTT 688 || |||||| | ||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 579 AGCCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCGGTG 638 Query 689 GTTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCG-AGAGAAGTGAAGGCATC 747 || || ||| |||||||| || ||||||| |||||||||| | | ||||||||| || || Sbjct 639 GTATGCGTGTTGGAATGGATTATACATAGCAAGCATTACT-GTAAAGAAGTGAAAGCTTC 697 Query 748 TGTCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGC 807 ||| |||||||| ||| | || ||||||||||||||||| |||||||||||||||||||| Sbjct 698 TGTAATGGTTGTGGTTATTGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGC 757 Query 808 CAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAAT 867 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 758 TAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATTTCTAT 817 Query 868 AGGTTCACTGCAGAAGAAATACTC-GATCGGATCATTCGAGTTGCTGAGTAAGACAGCTC 926 ||| || ||||||||||||||||| | | ||||| || || |||||||| || ||||| | Sbjct 818 AGGCTCTCTGCAGAAGAAATACTCAG-TAGGATCTTTTGAATTGCTGAGCAAAACAGCCC 876 Query 927 CAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCA 986 ||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||| Sbjct 877 CAATCCAAGCCATTTCACTTCTCATCTTTGGCCCCTTTGTTGACTATTTCTTGAGCGGCA 936 Query 987 GATTCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCG 1046 |||||| || ||||||||||||||||| | || || || ||||||||||| ||||||| Sbjct 937 AATTCATATCTACTTACAAGATGACTTACGGTGCCATCTTCTGCATTCTTCTTTCCTGCG 996 Query 1047 CATTGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCT 1106 ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || || | Sbjct 997 CATTGGCTGTTTTCTGTAACATAAGTCAATATCTCTGCATTGGAAGATTCTCAGCGACAT 1056 Query 1107 CATTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCT 1166 | ||||||||||| ||||||||||||||||| || ||| | |||||||| |||||| ||| Sbjct 1057 CTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGTTGGCTTCTCT 1116 Query 1167 TTGATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGG 1226 ||||||| |||||||||||||||||||| || ||||||| | ||||| | || ||||||| Sbjct 1117 TTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATGG 1176 Query 1227 TGATATACAGTTGGGCAGTCGAGT-TAGAGAAACAGAGAAA-GTCGAAAGTGATAC-CG- 1282 |||| || ||||||||||| || | ||||||||||||| || | | ||||| | || | Sbjct 1177 TGATCTATAGTTGGGCAGTTGA-TCTAGAGAAACAGAGGAATG-C-AAAGTTA-ACGCCA 1232 Query 1283 CATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTA-TAGAACA 1341 || || ||| |||||||||| |||||||||||||| || ||||| ||||| | | || || Sbjct 1233 CACGGCAAAAACAGTATGACCGAAGATGAGATTAAGCTACTCAAGGAAGG-AGTTGAGCA 1291 Query 1342 TATGGATTTGAAAGACATGGAGCTTGGAAATAATAAAGCATAA 1384 ||| || ||||||||| | ||||| || | | |||| ||||| Sbjct 1292 TATCGACTTGAAAGACGTTGAGCTCGGTGACACTAAACCATAA 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62353731065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5