BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21070.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921075 jgi|Araly1|921075|scaffold_102356.1 1770 0.0
Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1 1074 0.0
> Ahg921075 jgi|Araly1|921075|scaffold_102356.1
Length=1087
Score = 1770 bits (958), Expect = 0.0
Identities = 1038/1077 (96%), Gaps = 4/1077 (0%)
Strand=Plus/Plus
Query 331 AATCCAAATGGAGAAAG-CAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAG 389
||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 14 AATCCAAATGGAG-AAGACAGAGAACGAGAAGAAGCCATCGGCGGTATCTGACGTCGGAG 72
Query 390 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 73 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCGAATAAACAACTAATGT 132
Query 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTTA 509
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 133 CATCATCTGGTTTCGGCTTTAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTCA 192
Query 510 CTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCTC 569
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 193 CTGCTCTCGTTGGTATGGTGTCAAACGCGACTGGTTTATCTGCATCTAAGCATGTTCCTC 252
Query 570 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 312
Query 630 GTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTTG 689
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 313 GTCTCATGTTGAACTCTGTTGGTTTCTACCAGATTTCGAAATTGAGCATGATTCCGGTTG 372
Query 690 TTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 749
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TTTGCGTGATGGAATGGGTACTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 432
Query 750 TCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGCCA 809
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 433 TCATGGTTGTGGTTGTAGGAGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGCCA 492
Query 810 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 552
Query 870 GTTCACTGCAGAAGAAATACTCGATCGGATCATTCGAGTTGCTGAGTAAGACAGCTCCAA 929
|||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||
Sbjct 553 GTTCACTGCAGAAGAAATACTCAATCGGATCTTTTGAGTTGCTGAGCAAAACAGCTCCAA 612
Query 930 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 672
Query 990 TCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCGCAT 1049
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 673 TCATTTCTACTTACAAGATGACTTATGGCGCAATGTTATGCATTCTTCTCTCCTGCGCAC 732
Query 1050 TGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCTCAT 1109
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |
Sbjct 733 TGGCGGTTTTCTGCAACATTAGCCAATATCTCTGCATCGGCAGATTCTCCGCTACTTCCT 792
Query 1110 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCTTTG 1169
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 793 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACACTGGGATGGCTTATCTTTG 852
Query 1170 ATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGGTGA 1229
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 853 ATTCCGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCTGTGGTGGGAATGGTGA 912
Query 1230 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGATACCGCATGGTA 1289
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 913 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGACACCGCATGGTA 972
Query 1290 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1032
Query 1350 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATATAGCTCTATTCAAGAGAAA 1406
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1033 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATAAAGCT--ATTCAAGAGAAA 1087
> Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1
Length=1615
Score = 1074 bits (581), Expect = 0.0
Identities = 906/1063 (85%), Gaps = 21/1063 (2%)
Strand=Plus/Plus
Query 331 AATCCAAATGGAGAAAGCAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAGC 390
||| |||||||||||| | |||| ||||||||| ||||||||| || |||||||| ||
Sbjct 284 AATTCAAATGGAGAAACCGGAGAGCGAGAAGAA---ATCGGCTGTTTCCGACGTCGGTGC 340
Query 391 ATGGGCTATGAACGTAA-CGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449
|||||||||||| |||| | ||||||||||| |||||||||||||||||||| || ||||
Sbjct 341 ATGGGCTATGAATGTAATC-AGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCATGT 399
Query 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTC-TT 508
| || ||||| ||||| || |||| || |||||||| |||||||||||||| || | |
Sbjct 400 CTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACTCTTACGGGATTTCACTTCGC-CGTC 458
Query 509 ACTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCT 568
||||| || ||||||||||| || || || | || |||||||| |||||||||||||||
Sbjct 459 ACTGCACTTGTTGGTATGGTTTCAAACGCTTCGGGATTATCAGCTTCTAAGCATGTTCCT 518
Query 569 CTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTT 628
|||||||||||||| ||||||||| | |||||||||||||| || ||||||||||| ||
Sbjct 519 CTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCCATTGCTGCTATGAACTTC 578
Query 629 AGTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTT 688
|| |||||| | ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 579 AGCCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCGGTG 638
Query 689 GTTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCG-AGAGAAGTGAAGGCATC 747
|| || ||| |||||||| || ||||||| |||||||||| | | ||||||||| || ||
Sbjct 639 GTATGCGTGTTGGAATGGATTATACATAGCAAGCATTACT-GTAAAGAAGTGAAAGCTTC 697
Query 748 TGTCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGC 807
||| |||||||| ||| | || ||||||||||||||||| ||||||||||||||||||||
Sbjct 698 TGTAATGGTTGTGGTTATTGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGC 757
Query 808 CAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAAT 867
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 758 TAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATTTCTAT 817
Query 868 AGGTTCACTGCAGAAGAAATACTC-GATCGGATCATTCGAGTTGCTGAGTAAGACAGCTC 926
||| || ||||||||||||||||| | | ||||| || || |||||||| || ||||| |
Sbjct 818 AGGCTCTCTGCAGAAGAAATACTCAG-TAGGATCTTTTGAATTGCTGAGCAAAACAGCCC 876
Query 927 CAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCA 986
||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct 877 CAATCCAAGCCATTTCACTTCTCATCTTTGGCCCCTTTGTTGACTATTTCTTGAGCGGCA 936
Query 987 GATTCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCG 1046
|||||| || ||||||||||||||||| | || || || ||||||||||| |||||||
Sbjct 937 AATTCATATCTACTTACAAGATGACTTACGGTGCCATCTTCTGCATTCTTCTTTCCTGCG 996
Query 1047 CATTGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCT 1106
||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || || |
Sbjct 997 CATTGGCTGTTTTCTGTAACATAAGTCAATATCTCTGCATTGGAAGATTCTCAGCGACAT 1056
Query 1107 CATTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCT 1166
| ||||||||||| ||||||||||||||||| || ||| | |||||||| |||||| |||
Sbjct 1057 CTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGTTGGCTTCTCT 1116
Query 1167 TTGATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGG 1226
||||||| |||||||||||||||||||| || ||||||| | ||||| | || |||||||
Sbjct 1117 TTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATGG 1176
Query 1227 TGATATACAGTTGGGCAGTCGAGT-TAGAGAAACAGAGAAA-GTCGAAAGTGATAC-CG- 1282
|||| || ||||||||||| || | ||||||||||||| || | | ||||| | || |
Sbjct 1177 TGATCTATAGTTGGGCAGTTGA-TCTAGAGAAACAGAGGAATG-C-AAAGTTA-ACGCCA 1232
Query 1283 CATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTA-TAGAACA 1341
|| || ||| |||||||||| |||||||||||||| || ||||| ||||| | | || ||
Sbjct 1233 CACGGCAAAAACAGTATGACCGAAGATGAGATTAAGCTACTCAAGGAAGG-AGTTGAGCA 1291
Query 1342 TATGGATTTGAAAGACATGGAGCTTGGAAATAATAAAGCATAA 1384
||| || ||||||||| | ||||| || | | |||| |||||
Sbjct 1292 TATCGACTTGAAAGACGTTGAGCTCGGTGACACTAAACCATAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5