BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21080.3
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472346 jgi|Araly1|472346|fgenesh2_kg.1__2300__AT1G21080.1 1901 0.0
Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1 1099 0.0
> Ahg472346 jgi|Araly1|472346|fgenesh2_kg.1__2300__AT1G21080.1
Length=1523
Score = 1901 bits (1029), Expect = 0.0
Identities = 1190/1260 (94%), Gaps = 41/1260 (3%)
Strand=Plus/Plus
Query 200 agGAGCGGTTGAGTTGAAATTTGCTGGCGCGTACTCGTCAACGTAACGCGCGTGGAGTGT 259
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1 AGGAGCGGTTGAGTTGAAATTGGCTGGCGCGTACTCGTCAACG--ACGCGCGTGGAGTGT 58
Query 260 TTTCGTGtccctcctcctcctcctcctcctcACTAAGACAAATATTTTGAGGT-TCTCTT 318
||||||| ||||||||||||||||| ||||||| ||||| | ||||
Sbjct 59 TTTCGTG----------TCCTCCTCCTCCTCACTTAGACAAAGATTTT---CTATCTC-G 104
Query 319 TCTCGTTTGTGTGATCTGTCTGACAAGCTAGAAGAATCGTAGATCGTGATCGGATTGATT 378
| |||||||||||||||| | | | | ||||||||||||||||||||
Sbjct 105 T-TCGTTTGTGTGATCTG--T------C-----G----G-AGATCGTGATCGGATTGATT 145
Query 379 TGATAATTATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 438
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TGAT-A--ATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 202
Query 439 CGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATCCAGATAAAA 498
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 203 CGGAGGCTGAGATTAAGAAGGCTTATTACATCAAGGCACGCCAAGTACATCCAGATAAAA 262
Query 499 ACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCTACCAAGTGC 558
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 263 ACCCTAATGATCCTCAAGCTGCTCATAATTTCCAGGTGTTGGGAGAGGCCTACCAAGTGT 322
Query 559 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGATTTCAACTG 618
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 323 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATGTGGGAAGTCAGGGATTTCAACTG 382
Query 619 AGATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTCTTTGAAGAAT 678
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 383 AGATCATTGATCCCGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTTTTTGAAGAAT 442
Query 679 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 502
Query 739 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 562
Query 799 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 622
Query 859 CTAGCAATGCTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 918
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTAGCAATGGTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 682
Query 919 TGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGCTTGGGAAGAAAGCTA 978
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 683 TGAACACAATTGGATATATATATGTAAGACAAGCGGCGAAAGAGCTTGGGAAGAAAGCTA 742
Query 979 TTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 1038
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TTTATCTCGGTGTACCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 802
Query 1039 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 862
Query 1099 GGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 1158
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GGCAGCTAAGTGTTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 922
Query 1159 ATAAGAAAGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAAAGCACTA 1218
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 923 ATAAGAAAGTGATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAGAGCACTA 982
Query 1219 TCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACTGCCAAGAGAGAGGAGCTTCGTG 1278
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 983 TCTCCCGTGTTTGTGAGCTGGTACTTCAAGATCCCACTGCCAAGAAAGAGGAGCTTCGTG 1042
Query 1279 CAAGGGCCAAGGGGTTAAAAACTCT-GGGAAAGATCTTCCAGAAGAACAAGATAGCCAGT 1337
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1043 CAAGGGCCAAGGGGTTAAAAACTCTAGGGAA-GATCTTCCAGAAGAACAAGATAGCCAGT 1101
Query 1338 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGAAATGGTCAAGAACAT 1397
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1102 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGACATGGTCAAGAACAT 1161
Query 1398 GATCATTCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACCGTTGGACCTCAG 1457
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1162 GATCATGCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACATTTGGACCTCAG 1221
Score = 377 bits (204), Expect = 1e-103
Identities = 288/324 (89%), Gaps = 23/324 (7%)
Strand=Plus/Plus
Query 1485 GAACCGCAAAGCCCTTATGTGGAAGCACCGAAACTTGGAGAAGAGCAAATCAACTATTAC 1544
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 1222 GAACCGCAAAGCCCTTATGTGGAAACACCGAAACTTGGAGAAGAGCAATTCAACCAATAC 1281
Query 1545 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1341
Query 1605 ATTCACAGATGAACGAAAAGGTTAttttttcctttttttGCTATATAATATAAGTCTTTA 1664
| | | | | |||||| |||| ||||||||||||||||||||||
Sbjct 1342 A-T------T---C---------A--TTTTCCCTTTTGTGCTATATAATATAAGTCTTTA 1380
Query 1665 TGCATATTTGATATATTTGCAGGCGTTGGTATTACCATTATGTAATTTTTATTATTGTTA 1724
|||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1381 TGCATA-TTGATATATTTGCAGGCGGTGGTATTACAATTATGTAATTTTTATTATTTTTA 1439
Query 1725 GAAGAAGAAATTATTGGATC-TTTGAAAAAAGCACATGTTATCTCATCTTAGACAATGTA 1783
|||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 1440 GAAGAAGAAATTATTGGATCATTGGAAAAAAACACATGAAATCTCATCTTAGACAATGTA 1499
Query 1784 TAATGTTTTTATTCTATTTATATA 1807
||||||||||||||||||||||||
Sbjct 1500 TAATGTTTTTATTCTATTTATATA 1523
> Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1
Length=1606
Score = 1099 bits (595), Expect = 0.0
Identities = 942/1107 (85%), Gaps = 34/1107 (3%)
Strand=Plus/Plus
Query 371 GATTGATTTGATAAT-TATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCC 429
|||||||||| | || ||||||||||| ||||||| |||||||| ||||| |||||||
Sbjct 199 GATTGATTTG-TGATCGATGGTGAAGGAAACGGAGTACTACGATGTGCTCGGAGTTAGCC 257
Query 430 CCACCGCTACGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATC 489
| || ||||| || |||||||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct 258 CAACTGCTACAGAAGCTGAGATCAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCATC 317
Query 490 CAGATAAAAACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCT 549
||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||
Sbjct 318 CAGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTTTTGGGAGAGGCCT 377
Query 550 ACCAAGTGCTAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGA 609
| ||||||||||||||| |||| ||||| || || ||||| ||| ||||||||||||||
Sbjct 378 ATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGGAAGTCAGGGA 437
Query 610 TTTCAACTGA-G--ATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAAC 666
| || ||||| | ||||| ||||||||||| |||||||| ||||| ||||| || ||||
Sbjct 438 TCTCCACTGATGCAATCATCGATCCTGCGGCAATATTTGCAATGCTATTTGGCAGCGAAC 497
Query 667 TCTTTGAAGAATACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCA 726
| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 498 TTTTTGAAGAGTACATAGGACAGCTTGCTATGGCATCAATGGCTTCACTCGATATCTTCA 557
Query 727 CTGAAGGGGATCAGATTGATACTAAAAAGATTA-TAGAAAAAATGAGGGCTGTTCAGAAA 785
|||||||||||||| ||||||| ||||||| || ||||||||||||| ||| ||||||
Sbjct 558 CTGAAGGGGATCAGTTTGATACCAAAAAGA-TACAAGAAAAAATGAGGATTGTCCAGAAA 616
Query 786 GAAAGAGAAGACAAACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAAC 845
|||||||||||||| ||||||||| |||| || ||||| |||||| |||| ||| |||
Sbjct 617 GAAAGAGAAGACAAGCTTGCTCAGGTTCTCAAAGACCGACTCAACGAATATGTGATAAAC 676
Query 846 AAAGATGAATTTACT-AGCAATGCTGAAGCTGAAGTAACAAGACTCT-CAAATGCAGCAT 903
| ||| ||||||| | || || ||||||||||||||| | ||||| | |||||||||| |
Sbjct 677 AGAGACGAATTTA-TCAGTAACGCTGAAGCTGAAGTAGCTAGACT-TACAAATGCAGCTT 734
Query 904 ACGGGGTGGAAATGTTGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGC 963
| || ||||| |||||||| ||||| || ||||||||||| |||||||| ||||||||||
Sbjct 735 ATGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGC 794
Query 964 TTGGGAAGAAAGCTATTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGG-ACGAAA 1022
| ||||||||||||||||||||||| || |||||| | ||||||||||||||| || |||
Sbjct 795 TAGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAAC-AAA 853
Query 1023 GGTCACTTCATCAAATCCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTG 1082
||||||||||||||||| ||| |||||||||||||||| ||||| ||||| |||||| ||
Sbjct 854 GGTCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCTTTGTTCCAGTTG 913
Query 1083 CAAGAGGAAATGAAAAGGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAA 1142
|| ||||||||||||||||| |||| | ||||||| |||||||| ||| ||||||| ||
Sbjct 914 CAGGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTCGAG 973
Query 1143 GAGTACATGAAGACCCATAAGAA-AGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGC 1201
|| ||| | || ||||||| || ||| ||||||||||| ||||||||||||||||||||
Sbjct 974 GAATACCTTCAGGCCCATAA-AAGAGTGATGATTGATTCGCTGTGGAAGCTCAATGTTGC 1032
Query 1202 TGATATCGAAAGC-ACTATCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCC-ACTGCC 1259
|||||||||| || ||| | | ||||||||| ||| ||| ||||||||||| | |||
Sbjct 1033 TGATATCGAA-GCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAA-GCC 1090
Query 1260 AAGAGAGAGGAGCTTCGTGCAAGGGCCAAG-GGGTTAAAAACTCTGGGAAAGATCTTCCA 1318
|| ||||||||||||||| |||| || ||| ||||||||||||||||| | |||||||||
Sbjct 1091 AAAAGAGAGGAGCTTCGTACAAGAGC-AAGAGGGTTAAAAACTCTGGGGAGGATCTTCCA 1149
Query 1319 GAAGAAC-AAGATAGCCAGTGAGAGTGATCCTTTAGTAAG-AGCCGAACTTCACAAACTA 1376
|| || | |||| ||| ||||||||||||||||||| || | |||| ||| ||| ||
Sbjct 1150 GA-GAGCCAAGACAGCTAGTGAGAGTGATCCTTTAGCAAATAAT-GAACCTCAAAAATTA 1207
Query 1377 AACGGAAATGGTCAAG--A--AC-ATGATCATTCATCCACATCACCAAAATCTGATGAAG 1431
||||||||||| ||| | || ||||| || |||| |||||||||||||| ||||||
Sbjct 1208 AACGGAAATGG--AAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAG 1265
Query 1432 CATCTCGCTCTACCGT-TGGACCTCAG 1457
||| || ||||||| | ||| ||||||
Sbjct 1266 CATTTCACTCTACC-TCTGGTCCTCAG 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70352682515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5