BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21090.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313015 jgi|Araly1|313015|fgenesh1_pm.C_scaffold_1001795 1048 0.0
> Ahg313015 jgi|Araly1|313015|fgenesh1_pm.C_scaffold_1001795
Length=702
Score = 1048 bits (567), Expect = 0.0
Identities = 655/697 (94%), Gaps = 7/697 (1%)
Strand=Plus/Plus
Query 260 tcttcttctacttcttttgcttcctctctctt-ttctctcgcccttctctttccgccacg 318
|||||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
Sbjct 11 TCTTCTTCTACTTCTTTTCCTTCCTCTCT-TTCTTCTCTCGTCCTTCTTTTTCCGCCTCT 69
Query 319 tttctcGTCGACGGTGTCTCTGTCTGGAAATCCCCCACTGTTCATACCGGCGACTCTGTT 378
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 70 TTTCTCGTCGACGGTGTCTCTGTCTGGAAAACCCCCACTGTTCATGTCGGCGACTCTGTT 129
Query 379 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 189
Query 439 GTCTGCAACTTTACTCAAGCCACTCTTCTTACTAAACCTAATTCCACTTCCTTCACGTGG 498
|||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 190 GTCTGCGACTTTACACAAGCCACTCTTCTTACAAAACCTAATTCCACTTCCTTCTCGTGG 249
Query 499 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAAA 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 250 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAGA 309
Query 559 ACATGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCGCCGCGGCATCACCGCCA 618
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 310 ACTTGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCTCCGCGGCATCACTGCCG 369
Query 619 TCGCAACCACCAGCAA-CTGCCCCTGTTCCGGTTTCGGAAGGAGGAGTGATCTCATCTCC 677
||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 370 TCGCAACCACCGGCAAAC-GCCCCTGTTCCGGTTTCTGAAGGAGGAGTGATCTCATCTCC 428
Query 678 TTCTTCTTACCCTTGGCCATTAGGTCCTAGAGAAGGTTCAGCTTTCTCTCCGGGACCATC 737
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 429 TTCCTCCTACCCTTGGCCATTAGGTCCTAGAGAAGGCTCAGCTTTCTCTCCGGGACCATC 488
Query 738 CCCATCAGAGATCACGTCAGTGACAGTCCCTGGTAAAGACGGAGTTCCATTCATCAACAG 797
||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct 489 TCCATCAGAGATCACGTCTGTGACAGTCCCCGGAAAAGACGGAGTTCCGTTCATCAACAG 548
Query 798 TAATCCGGCAGTTCCTCTTCCTACCGGAGATGTCGACTCTACTTCCATTAACCCTTTACC 857
|||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 549 TAATCCAGCGGTTCCTCTTCCCACCGGAGAAGTCGACTCTACTTCCATTAATCCTTTACC 608
Query 858 AACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 668
Query 918 GTGTTGTGTAGCCATGTTTCTTTTTCTTGTTCTGTAG 954
||||||||||||||||||| || ||| ||||||||
Sbjct 669 GTGTTGTGTAGCCATGTTT-TTC--CTTCTTCTGTAG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5