BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21090.1 Length=1313 Score E Sequences producing significant alignments: (Bits) Value Ahg313015 jgi|Araly1|313015|fgenesh1_pm.C_scaffold_1001795 1048 0.0 > Ahg313015 jgi|Araly1|313015|fgenesh1_pm.C_scaffold_1001795 Length=702 Score = 1048 bits (567), Expect = 0.0 Identities = 655/697 (94%), Gaps = 7/697 (1%) Strand=Plus/Plus Query 260 tcttcttctacttcttttgcttcctctctctt-ttctctcgcccttctctttccgccacg 318 |||||||||||||||||| |||||||||| || |||||||| |||||| |||||||| | Sbjct 11 TCTTCTTCTACTTCTTTTCCTTCCTCTCT-TTCTTCTCTCGTCCTTCTTTTTCCGCCTCT 69 Query 319 tttctcGTCGACGGTGTCTCTGTCTGGAAATCCCCCACTGTTCATACCGGCGACTCTGTT 378 |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 70 TTTCTCGTCGACGGTGTCTCTGTCTGGAAAACCCCCACTGTTCATGTCGGCGACTCTGTT 129 Query 379 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 ATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAAT 189 Query 439 GTCTGCAACTTTACTCAAGCCACTCTTCTTACTAAACCTAATTCCACTTCCTTCACGTGG 498 |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 190 GTCTGCGACTTTACACAAGCCACTCTTCTTACAAAACCTAATTCCACTTCCTTCTCGTGG 249 Query 499 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAAA 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 250 TATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAGA 309 Query 559 ACATGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCGCCGCGGCATCACCGCCA 618 || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 310 ACTTGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCTCCGCGGCATCACTGCCG 369 Query 619 TCGCAACCACCAGCAA-CTGCCCCTGTTCCGGTTTCGGAAGGAGGAGTGATCTCATCTCC 677 ||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 370 TCGCAACCACCGGCAAAC-GCCCCTGTTCCGGTTTCTGAAGGAGGAGTGATCTCATCTCC 428 Query 678 TTCTTCTTACCCTTGGCCATTAGGTCCTAGAGAAGGTTCAGCTTTCTCTCCGGGACCATC 737 ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 429 TTCCTCCTACCCTTGGCCATTAGGTCCTAGAGAAGGCTCAGCTTTCTCTCCGGGACCATC 488 Query 738 CCCATCAGAGATCACGTCAGTGACAGTCCCTGGTAAAGACGGAGTTCCATTCATCAACAG 797 ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| Sbjct 489 TCCATCAGAGATCACGTCTGTGACAGTCCCCGGAAAAGACGGAGTTCCGTTCATCAACAG 548 Query 798 TAATCCGGCAGTTCCTCTTCCTACCGGAGATGTCGACTCTACTTCCATTAACCCTTTACC 857 |||||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 549 TAATCCAGCGGTTCCTCTTCCCACCGGAGAAGTCGACTCTACTTCCATTAATCCTTTACC 608 Query 858 AACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 917 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 TACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTT 668 Query 918 GTGTTGTGTAGCCATGTTTCTTTTTCTTGTTCTGTAG 954 ||||||||||||||||||| || ||| |||||||| Sbjct 669 GTGTTGTGTAGCCATGTTT-TTC--CTTCTTCTGTAG 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49102317096 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5