BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21130.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1 1991 0.0
Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1 1677 0.0
> Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1
Length=1325
Score = 1991 bits (1078), Expect = 0.0
Identities = 1255/1339 (94%), Gaps = 17/1339 (1%)
Strand=Plus/Plus
Query 14 CAACACTACAAAGAAGAAACACACTAtctctctctctctctcAATACATCTTTCCTCACT 73
||||| |||||||||||||||||| | | | | | |||||||||||||||||||| ||
Sbjct 1 CAACAATACAAAGAAGAAACACAC-A-CAC-AT-ACACTCTCAATACATCTTTCCTCGCT 56
Query 74 TCTGATCAGTGTGATCACGTAGAGTGCCTTGAAGGagaagaaagaaacaaaaagaaataa 133
|| |||||||| |||||||||||||||||||||||||||||||| || | ||
Sbjct 57 TCCGATCAGTGAGATCACGTAGAGTGCCTTGAAGGAGAAGAAAG--------AG--AGAA 106
Query 134 aaaTGGGATACCTTCTAGAAGAAACCTTAAGCTCTAACTCTAAAACCCCAATTGTTATCG 193
||||||||||| || | | ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 107 AAATGGGATACTTTATTGGAGAAACCTTAAGCTCTAACTCTAAAACCCCATTTGTTATTG 166
Query 194 ATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTGCTGCCTTTCCGA 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 167 ATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTGCTGCCTTTCCAA 226
Query 254 TGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTATGCTGAAGCCTCTC 313
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 227 TGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTACGCCGAAGCCTCTC 286
Query 314 GCAGCGACTCGTTCCTTTCACCATCTGAAATAGCGAGTAAGCTACCAACTACACCTCGTA 373
||| |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 287 GCACCGACTCGTTCCTCTCACCCTCTGAGATAGCGAGTAAACTACCAACTACACCTCGTA 346
Query 374 ACCCTGAGGCTCCGGTTTTGTTGGACCGTATGCTTCGTCTACTCGCTAGCTATTCTGTGG 433
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 347 ACCCTGAGGCTCCGGTTTTGTTGGACCGCATGCTTCGTCTACTCGCTAGCTATTCTGTGG 406
Query 434 TCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAGCAGAGCCAATTT 493
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 407 TCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAGCCGAGCCAATTT 466
Query 494 GCAGGTTTTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTTCTCAAGTCATTG 553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GCAGGTTCTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTTCTCAAGTCATTG 526
Query 554 TCAATTTCGATAGCGTCTTCCTCAATACTTGGGCACAATTGAAAGACGTGGTTCTAGAAG 613
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 527 TCAATTTCGATAGTGTCTTCCTCAATACTTGGGCACAATTGAAAGATGTGGTGCTAGAAG 586
Query 614 GAGGAGATGCATTTGGCCGCGCACATGGTGGTATGAAGCTCTTTGACTATATGGGTACAG 673
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 587 GAGGTGATGCATTTGGCCGCGCACATGGTGATATGAAACTCTTTGACTATATGGGTACAG 646
Query 674 ATGAGAGATTCAGCAAACTATTTAACCAGACCGGTTTTACCATTGCGGTTGTGAAGAAGG 733
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 647 ATGAGAGATTCAGCAAGCTCTTTAACCAAACCGGTTTTACCATTGCGGTTGTGAAGAAGG 706
Query 734 CTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTTTTAGTTGATGTGGGAGGAGGAG 793
||||||| ||||||||||| ||||||| ||||||||| || |||||||| ||||| ||||
Sbjct 707 CTCTTGAGGTTTACCAAGGTTTCAAAGATGTGAATGTGTTGGTTGATGTAGGAGGTGGAG 766
Query 794 TTGGTAACACTCTTGGTGTTGTTGCTTCTAAGTATCCAAATATTAAGGGTATCAACTTTG 853
|||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 767 TTGGTAACACCCTTGGTGTTGTTACTTCTAAGTATCCCAATATTAAGGGTATCAATTTTG 826
Query 854 ATCTAACCTGTGCCTTGGCACAAGCACCTTCTTATCCCGGTGTGGAGCATGTTGCCGGAG 913
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 ATCTAACTTGTGCCTTGGCACAAGCACCCTCTTATCCCGGTGTGGAGCATGTTGCCGGAG 886
Query 914 ATATGTTTGTGGATGTCCCAACCGGAGATGCCATGATCTTGAAACGTATACTTCATGATT 973
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 887 ATATGTTCGTAGATGTCCCAACCGGAGATGCTATGATCTTGAAACGTATACTTCATGATT 946
Query 974 GGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCACTACCAGAAAGCG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 947 GGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCACTACCAGAAAATG 1006
Query 1034 GTAAAGTAGTTGTTATAGAATTAGTCACTCCTGATGAGGCAGAGAATGGAGACATCAACG 1093
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1007 GTAAAGTGGTTGTCATAGAATTAGTCACTCCTGATGATGCAGAGAATGGAGACATCAACG 1066
Query 1094 CAAACATTGCCTTTGACATGGACATGTTAATGTTCACACAATGTTCCGGAGGAAAAGAGA 1153
|||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 1067 CAAACATTGCCTTTGACATGGACATGTTAATGTTTACCCAATGTTCTGGTGGAAAAGAGA 1126
Query 1154 GATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTTACCCATTGCAAGTTCG 1213
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1127 GATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTCACCCATTGCAAGTTCG 1186
Query 1214 TTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAATGTGTGAAATGTAA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1187 TTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAATGTGTTAAATGTAA 1246
Query 1274 AACAAAATCGTCGTTAATTATATATTTCCATCTTTGTTGCCATTCTT-TCTTGATATCTT 1332
||| |||||||||||||| || ||||| |||||||||||| ||| || ||||||||||||
Sbjct 1247 AACTAAATCGTCGTTAATAAT-TATTTGCATCTTTGTTGCAATT-TTCTCTTGATATCTT 1304
Query 1333 TGTCTTCGAGTAATAAAAG 1351
|||| ||||||||||||||
Sbjct 1305 TGTCATCGAGTAATAAAAG 1323
> Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1
Length=1264
Score = 1677 bits (908), Expect = 0.0
Identities = 1069/1149 (93%), Gaps = 2/1149 (0%)
Strand=Plus/Plus
Query 122 aaaaagaaataaaaaTGGGATACCTTCTAGAAGAAACCTTAAGCTCTAACTCTAAAACCC 181
||||||||| | |||||||||||||| | ||||||||| ||||||||||| |||||||||
Sbjct 1 AAAAAGAAAGAGAAATGGGATACCTTTTTGAAGAAACCGTAAGCTCTAACCCTAAAACCC 60
Query 182 CAATTGTTATCGATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTG 241
|||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 61 CAATTGTTATTGATGATGATAACGAGTTGGGTTTGATGGCCGTGAGGCTTGCCAATGCCG 120
Query 242 CTGCCTTTCCGATGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTATG 301
| |||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| |
Sbjct 121 CCGCCTTTCCAATGGTTCTCAAAGCTTCCCTTGAGCTCGGTGTATTTGACACTCTCTACG 180
Query 302 CTGAAGCCTCTCGCAGCGACTCGTTCCTTTCACCATCTGAAATAGCGAGTAAGCTACCAA 361
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 181 CTGAAGCCTCTCGCACCGACTCGTTCCTTTCACCCTCTGAGATAGCGAGTAAGCTACCAA 240
Query 362 CTACACCTCGTAACCCTGAGGCTCCGGTTTTGTTGGACCGTATGCTTCGTCTACTCGCTA 421
||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct 241 CTACACCCCGTAACCCTGGGGCTCCGGTTCTGTTGGACCGCATGCTTCGTCTACTCGCTA 300
Query 422 GCTATTCTGTGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAG 481
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 301 GCTATTCTATGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGCGTGAGAGGGTCTATAGAG 360
Query 482 CAGAGCCAATTTGCAGGTTTTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTT 541
| |||||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 361 CGGAGCCAATTTGCAGATTCTTCCTGAAGAATAACATTCAAGATATTGGATCCCTTGCTT 420
Query 542 CTCAAGTCATTGTCAATTTCGATAGCGTCTTCCTCAATACTTGGGCACAATTGAAAGACG 601
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 421 CTCAAGTCATTGTCAATTTCGACAGCGTCTTCCTTAATACCTGGGCACAATTGAAAGATG 480
Query 602 TGGTTCTAGAAGGAGGAGATGCATTTGGCCGCGCACATGGTGGTATGAAGCTCTTTGACT 661
|||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| |
Sbjct 481 TGGTGCTAGAAGGAGGAGATGCGTTTGGGCGTGCACATGGTGGCATGAAACTCTTTGATT 540
Query 662 ATATGGGTACAGATGAGAGATTCAGCAAACTATTTAACCAGACCGGTTTTACCATTGCGG 721
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 541 ATATGGGTACAGATGAGAGATTCAGCAAGCTCTTTAACCAGACCGGTTTTACCATTGCGG 600
Query 722 TTGTGAAGAAGGCTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTTTTAGTTGATG 781
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 601 TTGTGAAGAAGGCTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTGTTGGTTGATG 660
Query 782 TGGGAGGAGGAGTTGGTAACACTCTTGGTGTTGTTGCTTCTAAGTATCCAAATATTAAGG 841
||||||| |||||||||||||| |||||||||||| ||||||||||||| | ||||||||
Sbjct 661 TGGGAGGTGGAGTTGGTAACACCCTTGGTGTTGTTACTTCTAAGTATCCCAGTATTAAGG 720
Query 842 GTATCAACTTTGATCTAACCTGTGCCTTGGCACAAGCACCTTCTTATCCCGGTGTGGAGC 901
||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| || |
Sbjct 721 GTATCAATTTTGATCTAACTTGCGCCTTGGCACAAGCACCCTCTTATCCCGGTGTAGAAC 780
Query 902 ATGTTGCCGGAGATATGTTTGTGGATGTCCCAACCGGAGATGCCATGATCTTGAAACGTA 961
||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 781 ATGTTGCGGGAGATATGTTCGTAGATGTCCCAACCGGAGATGCTATGATCTTGAAACGTA 840
Query 962 TACTTCATGATTGGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCAC 1021
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TACTTCATGATTGGACCGACGAAGATTGTGTGAAGATTCTTAAGAATTGTTGGAAATCAC 900
Query 1022 TACCAGA-AAGCGGTAAAGTAGTTGTTATAGAATTAGTCACTCCTGATGAGGCAGAGAAT 1080
||||||| || ||||||||| ||||| |||||||||||||||||| |||| |||||||||
Sbjct 901 TACCAGACAA-CGGTAAAGTGGTTGTCATAGAATTAGTCACTCCTAATGACGCAGAGAAT 959
Query 1081 GGAGACATCAACGCAAACATTGCCTTTGACATGGACATGTTAATGTTCACACAATGTTCC 1140
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 960 GGAGACATCAATGCAAACATTGCCTTTGACATGGACATGTTAATGTTTACCCAATGTTCC 1019
Query 1141 GGAGGAAAAGAGAGATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTTACC 1200
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||
Sbjct 1020 GGAGGAAAAGAGAGATCACGAGCTGAATTTGAATCTTTGGCTGCAGCTTCTGGCTTCACC 1079
Query 1201 CATTGCAAGTTCGTTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAAT 1260
||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 CATTGCATGTTTGTTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGCAAATAAAAT 1139
Query 1261 GTGTGAAAT 1269
|||||||||
Sbjct 1140 GTGTGAAAT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5