BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21140.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921083 jgi|Araly1|921083|scaffold_102364.1 1033 0.0
Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1 721 0.0
> Ahg921083 jgi|Araly1|921083|scaffold_102364.1
Length=645
Score = 1033 bits (559), Expect = 0.0
Identities = 607/631 (96%), Gaps = 0/631 (0%)
Strand=Plus/Plus
Query 74 ACTTTACCATGGAATCACACAACGTGAGCAACAGCTTGAACCTAGACATGGAGATGGATC 133
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 15 ACTTAACCATGGAATCACACAACGTGAACAACAGCTCGAACCTAGACATGGAGATGGATC 74
Query 134 AAGAAAAGGCTTTCGACTACTCCAAAAGAGCTCAATGGCTAAGAGCCGCCGTGCTTGGTG 193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 75 AAGAAAAGGCTTTCGACTACTCCAAAAGAGCTCAATGGCTAAGAGCCGCCGTTCTTGGTG 134
Query 194 CCAACGACGGTCTTGTCTCGACGGCTTCACTTATGATGGGTGTCGGTGCGGTAAAGCAAG 253
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 135 CCAACGACGGTCTTGTCTCCACGGCTTCACTTATGATGGGTGTCGGTGCCGTAAAGCAAG 194
Query 254 ACGTCAAAGTCATGATCTTATCTGGTTTCGCCGGTTTGGTCGCCGGAGCTTGTAGCATGG 313
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 195 ACGTCAAAGTCATGATCTTATCTGGTTTCGCCGGTTTGGTCGCCGGTGCTTGTAGCATGG 254
Query 314 CTATCGGAGAGTTTGTCTCCGTTTACTCTCAGTACGACATCGAGGTGGCTCAAATGAAGA 373
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 255 CCATCGGAGAGTTTGTATCCGTTTACTCTCAGTACGACATCGAGGTGGCTCAGATGAAGA 314
Query 374 GAGAGAACGGAGGACAAGTGGAGAAAGAGAAGCTTCCGAGTCCCATGCAAGCGGCTGCCG 433
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 315 GAGAAAACGGAGGGCAAGTAGAGAAAGAGAAGCTTCCGAGTCCGATGCAAGCGGCTGCGG 374
Query 434 CGTCTGCGTTAGCGTTTTCTTTGGGTGCGATTGTGCCTTTAATGGCGGCTGCGTTTGTGA 493
| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 375 CATCTGCGTTAGCGTTTTCTTTGGGGGCGATTGTCCCATTAATGGCGGCTGCGTTTGTGA 434
Query 494 AAGACTATCACGTGAGAATAGGAGCGATCGTGGCGGCGGTGACATTGGCGTTAGTGATGT 553
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 435 AAGACTATCACGTGAGAATCGGAGCGATCGTGGCGGCGGTGACGTTGGCGTTAGTGATGT 494
Query 554 TTGGGTGGTTAGGAGCGGTTTTGGGGAAAGCACCGGTGTTTAAGTCGTCGGCTAGGGTTT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTGGGTGGTTAGGAGCGGTTTTGGGGAAAGCACCGGTGTTTAAGTCGTCGGCTAGGGTTT 554
Query 614 TGATTGGAGGATGGTTAGCTATGGCCGTTACTTTTGGTTTGACAAAACTGATTGGGACAC 673
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGATTGGAGGTTGGTTAGCTATGGCCGTTACTTTTGGTTTGACAAAACTGATTGGGACAC 614
Query 674 ATAGTCTGTGATATGTTTCTGTTTACTTACA 704
|||||||||||||||||| |||||| |||||
Sbjct 615 ATAGTCTGTGATATGTTTGTGTTTAGTTACA 645
> Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1
Length=602
Score = 721 bits (390), Expect = 0.0
Identities = 528/594 (89%), Gaps = 12/594 (2%)
Strand=Plus/Plus
Query 102 CAACAGCTTGAACCTAGACATGGA-GATGGATCAAGAAAAGGCTTTCGACTACTCCAAAA 160
||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 12 CAACACCTTGAACCTAGACATGGAGGA-AAATCAAGAAAAGGCTTTTGACTACTCCAAAC 70
Query 161 GAGCTCAATGGCTAAGAGCCGCCGTGCTTGGTGCCAACGACGGTCTTGTCTCGACGGCTT 220
|||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 71 GAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGTCTCGACGGCTT 130
Query 221 CACTTATGATGGGTGTCGGTGCGGTAAAGCAAGACGTCAAAG-TCATGATCTTATCTGGT 279
|||||||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 131 CACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTC-AAGATCATGATCTTAACTGGT 189
Query 280 TTCGCCGGTTTGGTCGCCGGAGCTTGTAGCATGGCTATCGGAGAGTTTGTCTCCGTTTAC 339
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 190 TTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGTCTCCGTTTAC 249
Query 340 TCTCAGTACGACATCGAGGTGGCTCAAATGAAGAGAGAGAACGGAGGACAAGTGGAGAAA 399
|||||||| ||||| ||||||||||| ||||||||||||| ||||||| | || ||||||
Sbjct 250 TCTCAGTATGACATAGAGGTGGCTCAGATGAAGAGAGAGACCGGAGGAGAGGTAGAGAAA 309
Query 400 GAGAAGCTTCCGAGTCCCATGC-AAGCGGCTGCCGCGTCTGCGTTAGCGTTTTCTTT-GG 457
||||| || ||||| |||| | |||||||||| || |||||||||||||||||| | ||
Sbjct 310 GAGAAACTCCCGAG-CCCAACCCAAGCGGCTGCAGCATCTGCGTTAGCGTTTTCTCTCGG 368
Query 458 GTGCGATTGTGCCTTTAATGGCGGCTGCGTTTGTGAAAGACTATCACGTGAGAATAGGAG 517
| ||||| ||||| ||| |||||||||||||||||||||| ||| | ||||| || ||||
Sbjct 369 G-GCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAG 427
Query 518 CGATCGTGGCGGCGGTGACATTGGCGTTAGTGATGTTTGGGTGGTTAGGAGCGGTTTTGG 577
||| ||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 428 TGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 487
Query 578 GGAAAGCACCGGTGTTTAAGTCGTCGGCT-AGGGTTTTGATTGGAGGATGGTTAGCTATG 636
|||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 488 GGAAAGCACCGGTGGTTAAGTCGTCG-CTTAGGGTTTTGGTTGGAGGATGGTTAGCTATG 546
Query 637 GCCGTTACTTTTGGTTTGACAAAACTGATTGGGACACATAGTC-TGTGATATGT 689
||| |||| |||||||| |||||||| |||||| ||||| ||| | || |||||
Sbjct 547 GCCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTCATATG-TATGT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5