BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21150.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313019 jgi|Araly1|313019|fgenesh1_pm.C_scaffold_1001799 1772 0.0
Ahg939381 jgi|Araly1|939381|scaffold_503572.1 357 1e-97
> Ahg313019 jgi|Araly1|313019|fgenesh1_pm.C_scaffold_1001799
Length=4290
Score = 1772 bits (959), Expect = 0.0
Identities = 1206/1320 (91%), Gaps = 37/1320 (3%)
Strand=Plus/Plus
Query 57 CAAAGGTATTCACGACGGTCTTTTAGCTCTATTCTCTATTGAGAACCTGATTTTTCCGGT 116
|||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 2991 CAAAGGTATTCACGACGGTCTTTTAGCTCTATTCTCGGTTGAGAACCAGATCTTTCCGGC 3050
Query 117 GAATTTTGATTATTGCAAAGTTGGAGAATTTTTGAGATTTA-GAAGAG---A-TAC-TGG 170
||| |||||||||||||||||| | ||| || | ||| | | ||| | ||| |
Sbjct 3051 GAA-TTTGATTATTGCAAAGTT-G-GAA--TTCG-TATTCATGTCGAGCTTATTACACAG 3104
Query 171 C-TTAGGATTCGTATTCATGTCGAGCTTATTACACTGTAGAAATGTC-GTAGATTGTGCG 228
| ||| || || || || | ||| | | ||||||||||||| | ||||||||||
Sbjct 3105 CAGAAGGGTTTGT-TTAAT-T---TCTT-CT-CTCTGTAGAAATGTCAG-AGATTGTGCG 3156
Query 229 TTTA---CTTCTTCCACTGTTCGTCGCATTGTCAATTTAGGGTTTTTAGTGGGTAGAATA 285
|||| |||||||| ||||| |||| | ||||||||||||||||| ||| |||||| |
Sbjct 3157 TTTACTTCTTCTTCCCCTGTTAGTCGTGTCGTCAATTTAGGGTTTTTGGTGAGTAGAAGA 3216
Query 286 AGAA-CGTTGTGTTCAGTGTCACAAGTGAAATCAGAGAATCTCGAAAAGCAAAAACCATG 344
| || ||| |||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 3217 ATAATGGTT-TGTTCAGTATCACAAGTGAAATCAGAGAATCTCGAGAAGCAAAACCCATG 3275
Query 345 TTTGGAATCTTTTACAGTTTCTTATCTCGTGGATTCTTGTGGACTGTCTTTGGAATCTGC 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3276 TTTGGAATCTTTTACAGTTTCTTATCTCGTGGATTCTTGTGGACTGTCTTTGGAATCTGC 3335
Query 405 TAAATCGAATTCCAGATTCGTCAAATTGGTTTCGTCCAAGAAACCAGACTCTGTTCTTGC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3336 TAAATCGAATTCCAGATTCGTCAAATTGGTTTCGTCCAAGAAACCAGACTCTGTTCTTGC 3395
Query 465 TCTCTTCAAGGACCATGGCTTCACCAATGACCAGATCACCAGTGTCATCAAATCCTTTCC 524
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 3396 TCTCTTCAAGGACCATGGCTTCACCACTGACCAGATCACCAATGTCATCAAATCCTTTCC 3455
Query 525 TCGTGTTCTGTCACTGAGCCCGGAAGATGTAATCTCGCCCAAGCTCATGTTTTTCAGTTC 584
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 3456 TCGTGTTCTGTCACTGAGCCCGGAGGATGTTATCTTGCCCAAGCTCATGTTTTTCAGTTC 3515
Query 585 TATCGGGTTTTCGACCTCGGATACTGCGAAAATGATCTCTTCTTCCCCGAAAATGCTATC 644
|||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 3516 TATCGGGTTTTCGACCTCTGATACTGCGAAGATGATCTCTTCTTGCCCGAAAATGCTGTC 3575
Query 645 ATATAGCTTGCACAAAAGATTGATCCCTTGCTATGATTCCCTCAAGAGCATACTCGTTGA 704
| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 3576 ACATAGCTTGAACAAAAGAATGATCCCTTGCTATGATGCCCTCAAGAGCATACTCGTTGA 3635
Query 705 GGAAGAAAGTGTTGTCAAGTGTCTCAAGCGTGGA-ATCAGATGTTTCTCATTGAAGATTA 763
|||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 3636 GGAAGAAAACATTGTCAAGTGTCTCAAGCGCGGATA-CAGATGTTTCTCATTGAAGATTA 3694
Query 764 CACATTGTGTGTCTCTTCGTGTCTCCATTTGTAGAGAGCTTGGAGTTCCTGACAAAAGCA 823
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3695 CAGATTGTGTGTCTCCTCGTGTCTCCATTTGTAGAGAGCTTGGAGTTCCTGACAAAAGCA 3754
Query 824 TCAAGTGGTTGGTTCAAGCGTCTCCATTCACTTTTTTCTCTCGTGAGAGAAGATTCAACG 883
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 3755 TCAAGTGGTTGGTTCAAGCGTCTCCAGTCACTTTTTTCTCTCCTGAGAGAAGATTCAGCG 3814
Query 884 AGGTCTTAAACAGAGTTTGCAGCTACGGTTTTGACCCGAAAAAGGCGGGTTTTGTTCACG 943
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3815 AGCTCTTAAACAGAGTTTGCAGCTACGGTTTTGACCCCAAAAAGGCGGGTTTTGTTCACG 3874
Query 944 CTATGGTAGCCTTTGATTGCACGAGTGAATCAGCAATGGAGCGGAAATTT-AAGTTGTTC 1002
||||||||||||||||| |||||||||| || ||||||| ||||||||| || ||||||
Sbjct 3875 CTATGGTAGCCTTTGATCACACGAGTGAAGCAACAATGGAACGGAAATTTGAA-TTGTTC 3933
Query 1003 CAATGTTTTGGTTGGTCTAAAGAAGATTTCGTCGCAGCGATCATGAGATTCCCAAACTGT 1062
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3934 CAACGTTTTGGTTGGTCTAAAGAAGATTTCGTCGCAGCAATCATGAGATTCCCAAACTGT 3993
Query 1063 GTGACGGTTTCAGATGAGAAGATAATGTACAC-ATTGGAGTACCTTGTAAACAACATTGG 1121
|||| ||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||
Sbjct 3994 GTGATGGTTTCAGATGAGAAGATACTGTACACGAT-GGAATACCTTGTAAACAACATTGG 4052
Query 1122 TCTGCAAGCTCGTGACATTGTTGCAAGACCGGTGGTGTTAT-CTCTGAGCATGGAGAAGA 1180
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 4053 CCTGCAGGCTCGTGACATTGTTGCAAGACCGGTGGTGTTAGGC-CTGAGCATGGAGAAGA 4111
Query 1181 GAATCAAACCGAGGAACCAGGTCATCTCTTTGCTTCTCTCCAAAGGACTTGTGAAGAAGG 1240
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 4112 GAATCAAACCAAGGAACAAGGTCATCTCTTTGCTTCTCTCTAAAGGACTTGTGAAGAAGG 4171
Query 1241 AAGACATCAACTATTTCACTATACTAAAGCTGAAAAGCTCCGAGTTCATGGATAAGTTTG 1300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 4172 AAGACATCAACTATTTCACTATACTAAAGCTGAAAAGCTCTGAGTTCATGGATAAGTTTG 4231
Query 1301 TGCTGAAATATCAGGATGAGATGCCACAACTTGTACAA-CCCTTTACAAGTAATCGATGA 1359
|||||||| ||||| ||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 4232 TGCTGAAACATCAGAATGTGATGCCACAACTTGTACAAACCCTT-ACAAGTAATCGATGA 4290
Score = 54.7 bits (29), Expect = 2e-06
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 177 ATTCGTATTCATGTCGAGCTTATTACACTGTAGAA 211
|||||||||||||||||||||||||||| | ||||
Sbjct 3075 ATTCGTATTCATGTCGAGCTTATTACACAGCAGAA 3109
> Ahg939381 jgi|Araly1|939381|scaffold_503572.1
Length=1140
Score = 357 bits (193), Expect = 1e-97
Identities = 716/958 (75%), Gaps = 78/958 (8%)
Strand=Plus/Plus
Query 339 ACCATGTTTGGAA-TCTTTTACAGTTTCTTATCTCGTGGATTCTTGTGGACTGTCTTTGG 397
|||||| || || || ||||| || || ||||||||| |||| ||||| |||||||||
Sbjct 110 ACCATGGTT-AAAGTCCTTTACTGTCTCATATCTCGTGAATTCGTGTGGGTTGTCTTTGG 168
Query 398 AATCTGCTAAATCGAATTCCAGATTCGTCAAA-TTGGT-TTCGTCCAAG-AA-ACCAGAC 453
|||||||||| || || ||||||||||| ||| || || || | | || || |||||||
Sbjct 169 AATCTGCTAAGTCAAAGTCCAGATTCGT-AAAGTT-GTCATC-TTC-AGAAAGACCAGAC 224
Query 454 TCTGTTCTTGC-TCT-CTTCAAGGACCA-TGGCTTCACCAATGACCAGATCACCAGTGTC 510
||||| || | | | | |||| || || ||||||||||||||| ||||||| ||| ||
Sbjct 225 TCTGTACTCACAT-TGC-TCAA-GAACAGTGGCTTCACCAATGAACAGATCATCAGGGTT 281
Query 511 ATCAAATCCTTTCCTCG--TGTTCTGTCACTG--AGCCCGGAAGA-TGTAATCTCGCCCA 565
|||||| | |||| || | ||||| | || | ||| | ||| |||| ||| || |
Sbjct 282 GTCAAAT-CATTCC-CGACTATTCTG--ATTGTTAACCCAG-AGACTGTACTCTTACCAA 336
Query 566 AGCTCATGTTTTTCAGTTCTATCGGGTTTTCGACCTCGGATACTGCGAAAATGATCTCTT 625
|||||||||||||| | || |||||||| |||| ||| |||||||||||| | |||||
Sbjct 337 AGCTCATGTTTTTCCGATCAATCGGGTTATCGAGCTCTGATACTGCGAAACTCATCTCAA 396
Query 626 CTT-CCCCGAAAATGCTAT-CATATAGCTT-GCACAAAAGATTGATCCCTTGCTATGATT 682
|| ||| | || ||| | | | |||||| || || || |||| |||||||||||||
Sbjct 397 ATTGTCCC-ACAACGCTCTCCCT-TAGCTTGGC-TAACAGGCTGATTCCTTGCTATGATT 453
Query 683 CCCTCAAGAGCATACTCGTTGAGGAAGAAAGTGTTGTCAAGTGTCTCA-AGCGTGGA-AT 740
|||||||||||||||||| ||| |||||| ||| |||| ||| | | | |||||| ||
Sbjct 454 CCCTCAAGAGCATACTCGGCGAGCAAGAAAATGTCCTCAAATGTTTGAGA-CGTGGATAT 512
Query 741 CAGATGTTTCTCATTGAAGATTACACATTG-TGTGTCT-CTTCG--TGTCTCCATTTGTA 796
||| |||| ||||| | | | || | | | || || | || | |||| | |||
Sbjct 513 TGGAT-TTTCACATTGGACACTGCAAAGTACT-TGGCTACA-CGGCTATCTC--TCTGTC 567
Query 797 GAGAGCTTGGAGTTCCTG-ACAAAAGCATCAA-GTGGTTGGTTCAAG-CGTCTCCA-TTC 852
|||| |||||||| || | || |||||||||| | | ||| ||| || |||| ||
Sbjct 568 GAGATCTTGGAGT-CCGGGACCAAAGCATCAAAGCACT-GGTCCAAAACGG-TCCACTTG 624
Query 853 ACTTTTTTCT-CTCGTGAGAGAA-GATTCAACGAGGTCTTAAACAGAGTTTGCAGCTACG 910
|| || || ||| ||||||| | |||||||||||| | ||||||||||||| || |
Sbjct 625 TGTTCTT-CTGCTCC-GAGAGAAAG-TTCAACGAGGTCCTGAACAGAGTTTGCAACTTTG 681
Query 911 GTTTTGACCCGAAAAAGGCGGGTTTTGTTCACGCTATGGTAGCCTTTGATTGCACG--AG 968
||||||||||||||||| | ||| |||| |||||| ||| ||| || || | ||
Sbjct 682 GTTTTGACCCGAAAAAGATGTATTTCATTCATGCTATGTTAGT-TTTCTTT-CATGTTAG 739
Query 969 TGAAT-CAGCAATGGAGCGGAAATTTAAGTTGTTCCAATGTTTTGGTTGGTCTAAAGAAG 1027
||||| || | |||| | || ||| | ||| |||| | ||||||||| ||||| |
Sbjct 740 TGAATTCA-CTGTGGAACACAAGTTTGGGCTGTACCAACAATATGGTTGGTCCAAAGACG 798
Query 1028 ATTTCGTCGCAGCGAT-CATGAGATTCCCAAACTGTGTGACGGTTTCAGATGAGAAGATA 1086
||| ||| ||||| || ||||||||||||||||||||||| | | ||||||| ||||||
Sbjct 799 ATTGCGTGGCAGC-ATTCATGAGATTCCCAAACTGTGTGAAGATATCAGATGGGAAGATT 857
Query 1087 ATGT-ACAC-ATTGGAGTACCTTGTAAACAA-CATTGGTCTGCAAGCTCGTGACATTG-T 1142
| | | || || ||| ||||| |||||||| | | ||||| | || ||| ||||| |
Sbjct 858 ACGGGA-ACCAT-GGATTACCTCGTAAACAATC-TGGGTCTCCCTCCTGGTGCCATTGCT 914
Query 1143 -TGCAAGACCGGTGGTGTTATCTCTGAGCATGGAGAAGAGAATCAAACCGAGGAACCAGG 1201
||||| || | || || | ||||| ||||||||||||||||||| |||||| ||
Sbjct 915 ATGCAA--CCTTTTGTTTTGGGTTTGAGCTTGGAGAAGAGAATCAAACCAAGGAACGTGG 972
Query 1202 TCATCTCTTTGCTTCTCTCC-AAAGGACTTG-TGAAGAAGGAAGACATCAACTATTTC 1257
| || ||| |||||| | | ||||| |||| ||||||| ||||| | |||||||||
Sbjct 973 TGATATCTGAGCTTCT-TGCTAAAGG-CTTGGTGAAGAAAGAAGATTTGAACTATTTC 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5