BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21170.1
Length=3505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921086 jgi|Araly1|921086|scaffold_102367.1 5446 0.0
Ahg476843 jgi|Araly1|476843|fgenesh2_kg.2__1973__AT1G76850.1 2970 0.0
> Ahg921086 jgi|Araly1|921086|scaffold_102367.1
Length=3299
Score = 5446 bits (2949), Expect = 0.0
Identities = 3166/3271 (97%), Gaps = 13/3271 (0%)
Strand=Plus/Plus
Query 25 GAAGATGAGCTACTTCAAATGGCGTTGAAGGAGCAATCTCAGAGAGATGTTACCTATCAG 84
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 40 GAAGATGAGCTACTTCAAATGGCGTTGAAGGAGCAATCTCAGAGAGATCTTACCTATCAG 99
Query 85 AAGCCTCCTTCCGCTAATTCCCGTAAGCCAGTCACCAATTTAGTGCAGCAGCCACGGAGA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 AAGCCTCCTTCCGCTAATTCCCGTAAGCCAGTCACCAATTTAGTGCAGCAGCCACGGAGA 159
Query 145 CAAAAGAGGGCGGCAGCTCCTCCGTCTAAGGGAGGTGCGAAGGCGTCAAGGAAGCCATCG 204
|| |||| |||| ||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 160 CAGAAGACGGCGACAGCTCCTCCGCCGAAGGGAGGTTCGAAGGCGTCAAGGAAGCCATCG 219
Query 205 ATGGATGAGGATGATGAATCGGAGGTGGAATTGCTTAGCATTTCGAGCGGGGATGAAGAT 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 220 ATGGATGAGGATGATGAATCGGAGGTGGAATTGCTTAGCATTTCGAGCGGGGATGAGGAT 279
Query 265 GAGGGAAATGATCGGggaagaggtggtggtggtgacggtggcggaggtagaggaagaggt 324
|| ||||||||||||| |||| | |||| ||||||||||||||||||||||||||
Sbjct 280 GACGGAAATGATCGGGCAAGA------GATGGTCACGGTGGCGGAGGTAGAGGAAGAGGT 333
Query 325 ggaagtggtaaggagagaggaCGAGCGCGGAAGGAAGATGATAGAGCTTGGGATGGAGTG 384
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 334 GGAAGTGGTAAGGAGAGAGGAAGAGCGCGGAAGGAAGATGATAGAGCTTGGGATGGAGTG 393
Query 385 GAGCCAGATTGCTGGAAACGGGTTAATGAAGCTGAGCTTGCACGCAAGGTTCGTGATATG 444
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 394 GAGCCAGATTGCTGGAAACGGGTTAATGAAGCTGAGCTTGCACGCAGGGTTCGTGATATG 453
Query 445 CGGGAGTCGAGAACAGCACCATCCGTGACTCAGAACCTTGATAGAAAGGTATCTGGAGCT 504
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 454 CGGGAGTCGAGAACAGCACCATCTGTGACTCAGAACCTTGATAGGAAGGTATCTGGAGCT 513
Query 505 GACAAGAAAGTGGTTCTTACCAGTTTGCAATCATTCCCTCGTGGCATGGAATGCATTGAT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GACAAGAAAGTGGTTCTTACCAGTTTGCAATCATTCCCTCGTGGCATGGAATGCATTGAT 573
Query 565 CCGCTAAAATTGGGGATAATAGATAACAAGACACTGAGATTAATCACTGAGTCATCTGAA 624
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CCACTAAAATTGGGGATAATAGATAACAAGACACTGAGATTAATCACTGAGTCATCTGAA 633
Query 625 AGTCTTTCAAAAGCTGAGAAAGTGGATAATGCACTTAGGGAAAAGTTGGTGTACACCTCT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 634 AGTCTTTCAAAAGCTGAGAAAGTGGATAATGCACTTAGGGAAAAGTTGGTGTACATCTCT 693
Query 685 GACCATTTCGATCCCAAGCTATTTATTTCTCGCATTCACCAAGAGACAAGTGCAGCAGAC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GACCATTTCGATCCCAAGCTATTTATTTCTCGCATTCACCAAGAGACAAGTGCAGCAGAC 753
Query 745 TTAGAATCTGGGGCCCTTGCCCTGAAAAGTGACTTAAAGGGCCGTAATCTACAAAGGAAA 804
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTGGAATCCGGTGCCCTTGCCCTGAAAAGTGACTTAAAGGGCCGTAATCTACAAAGGAAA 813
Query 805 CAATTGGTGAAAGATAATTTTGACTGCTTTGTCTCGTGTAAAACAACAATTGATGATATT 864
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CAATTGGTTAAAGATAATTTTGACTGCTTTGTCTCGTGTAAAACAACAATTGATGATATT 873
Query 865 GAATCAAAACTGAAACGGATTGAAGACGACCCAGACGGATCGGGAACTACTCATTTGTTT 924
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 874 GAATCAAAACTGAAACGGATCGAAGACGACCCAGACGGATCGGGAACTACTCATTTGTTT 933
Query 925 AATTGTATGAAGAGTGTGACATCACGGGCTAATCGTGCTTTTGAGCCACTTTTTGAGAGA 984
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AATAGTATGAAGAGTGTGACATCACGGGCTAATCGTGCTTTTGAGCCACTTTTTGAGAGA 993
Query 985 CAGGCCCAAGCTGAGAAGATCAGGTCTGTACAAGGAATGCTTCAGAGATTCCGTACACTC 1044
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 994 CAGGCCCAAGCTGAGAAGATCAGGTCTGTACAGGGAATGCTTCAGAGATTCCGTACACTC 1053
Query 1045 TTCAATTTACCCAGTATAATTCGTAGTAGTATTAGCAAAGGCGAGTATGATTTGGCTGTT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TTCAATTTACCCAGTATAATTCGTAGTAGTATTAGCAAAGGCGAGTATGATTTGGCTGTT 1113
Query 1105 CGGGAATACAAGAAGGCGAAGTCTATTGCTCTCCCTTCTCATGTAAATTTACTCAAGCGC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CGGGAATACAAGAAGGCGAAGTCTATTGCTCTCCCTTCTCATGTAAATTTACTCAAGCGC 1173
Query 1165 GTACTCGAGGAGGTTGAGAAAGTGATGCAGGAGTTTAAAGGCACCCTTTACAGGTCTATG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1174 GTACTCGAGGAGGTTGAGAAAGTGATGCAGGAGTTTAAAGGCACCCTTTACAGATCTATG 1233
Query 1225 GAAGATCCGAAAATAGATTTTACGAGTCTGGAAAACACTGTGAGGCTTTTGCTGGAACTG 1284
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1234 GAAGATCCGAAAATAGATTTTACGAGTCTGGAAAACACTGTGAGGCTTTTACTGGAGCTG 1293
Query 1285 GAGCCTGAATCGGATCCTGTTTGGCATTACTTAAATGTTCAGAATCATAGGATCCATGGG 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GAGCCTGAATCGGATCCTGTTTGGCATTACTTAAATGTTCAGAATCATAGGATCCATGGG 1353
Query 1345 ATGCTTGAAAAGTGTACATTTGATCATGAAGCAAGGATGGAAATTTTGCGCAACCAGGTG 1404
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1354 CTGCTTGAAAAGTGTACATTTGATCATGAAGCAAGGATGGAAAGTTTGCGCAACCAGGTG 1413
Query 1405 CATGAGAGAGCTCTCTCTGACGCGAAGTGGCGACAAATTCAACAAAATGGTGTTCAACTT 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CATGAGAGAGCTCTCTCTGACGCGAAGTGGCGACAAATTCAACAAAATGGTGTTCAACTT 1473
Query 1465 TCAGATGACACGTCTTCTATGGAAGATAATCAAGTTCAAGTTGACCAACCATTAGAAGAG 1524
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1474 TCAGATGACATGTCTTCTATGGAAGATAATCAAGTTCAAGTTGACCAACCATCAGAAGAG 1533
Query 1525 TCAGCGAGGA-GAGAAAAGGATGCTTTGAGGGGAAGATACATCAAGATATTGACTGCTGT 1583
|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1534 TCAGCG-GGAAGAGAAAAGGATGCTTTGAGGGGAAGATACATCAAAATATTGACTGCTGT 1592
Query 1584 AATCGTATATCATCTCCCTACGTTTTGGAAAACAGCTCTTTCTGTTTTTACTGGGAAATT 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 AATCGTATATCATCTCCCTACGTTTTGGAAAACAGCTCTTTCTGTTTTTACTGGGAAATT 1652
Query 1644 TGCCAAGTCTTCCCAAGTTAATGATACTTCAGCCAGTAAAGCTGAGGAGAAGGCGGAAGA 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 TGCCAAGTCTTCCCAAGTTAATGATACTTCAGCCAGTAAAGCTGAGGAGAAGGCGGAAGA 1712
Query 1704 AGCGAGATATTCAAGTCATTCTTTGGAAGAAATTGCTGGGATGATACGCAATACCATTTC 1763
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 AGCGAGGTATTCAAGTCATTCTTTGGAAGAAATTGCTGGGATGATACGCAATACCATTTC 1772
Query 1764 TGTTTATGAAGCAAAGGTGCAAAGCACTTTTCATGATTTTGACGAATCATACATTCTCCA 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 TGTTTATGAAGCAAAGGTGCAAAGCACTTTTCATGATTTTGACGAATCATACATTCTCCA 1832
Query 1824 CCCATATATGAGTGATACAATCAAAGAAGTATCAAAAGCATGCCAAGCTTTTGAGGCCAA 1883
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 CCCATATATGAGTGATACCATCAAAGAAGTATCAAAAGCATGCCAAGCTTTTGAGGCCAA 1892
Query 1884 AGAGTCAGCTCCCCATAGTGCTGTCATGGCACTAAGAAAAGTTAAGGTGGAAATCACTAA 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 AGAGTCAGCTCCCCATAGTGCTGTCATGGCACTAAGAAAAGTTAAGGTGGAAATCACTAA 1952
Query 1944 AATATACATCCAAAGGCTCTGCTCTTGGATGAGAGCGTCTACAGAAGAAATATCAAAGGA 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 AATATACATCCAAAGGCTCTGCTCTTGGATGAGAGCGTCTACAGAAGAAATATCAAAGGA 2012
Query 2004 AGAGACGTGGATTCCAGTTTCTATTCTTGAAAGGAACAGATCTCCATATTCCATCTCTTA 2063
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 AGAGACGTGGATCCCAGTTTCTATTCTTGAAAGGAACAGATCTCCATATTCCATCTCTTA 2072
Query 2064 CCTGCCCCTTGCATTTCGTTCAATTATTGTTTCTGGGATGGAACAAATTAATATGATGAT 2123
|||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2073 CCTGCCCCTTGCGTTCCGTTCAGTTATTGTCTCTGGGATGGAACAAATTAATATGATGAT 2132
Query 2124 TCTATCTTTAAAAGGTGAAGCTGCTAGATCCGAAGATATGTTTGCGCATATTGAAGAAAT 2183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2133 TCTATCTTTAAAAGGTGAAGCTGCTAGATCCGAAGATATGTTTGCACATATTGAAGAAAT 2192
Query 2184 TCTGATATCTGTTAGACTTGCCTTTTTGAACTGCTTTCTGGATTTTGCTGCTCACTTGGA 2243
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2193 CCTGATATCTGTTAGACTTGCCTTTCTGAACTGCTTTCTGGATTTTGCTGCTCACCTGGA 2252
Query 2244 GCAAATTGGTGCTGACCTTTCTCAACGCAC-TACAAAGCGAGAGAGTTGGCAAAATGGAT 2302
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2253 GCAAATTGGTGCTGACCTTTCTCAACGCACCT-CAAAGCGAGAGAGTTGGCAAAATGGAT 2311
Query 2303 ACTCCAATGACCACCAGGAAGAACAATCAATCAATGCTCCTGAAAGTGTTGTTGATCCTC 2362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 ACTCCAACGACCACCAGGAAGAACAATCAATCAATGCTCCTGAAAGTGTTGTTGATCCTC 2371
Query 2363 ACAGGCAGTTGTTGATGATCTTAAGTAATATAGGTTACTGCAAAGACGAACTTGCCTCTG 2422
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2372 ACAGGCAGTTGTTGATGATTTTAAGTAATATAGGCTACTGCAAAGACGAACTTGCCTCTG 2431
Query 2423 AGCTTTACAACAAGTACAAATATACCTGGTTACAGTCTAGGAGAAATGATGAAGACATCA 2482
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2432 AGCTTTACAACAAGTACAAATATACCTGGTTACAGTCTCGGAGAAATGATGAAGACATCA 2491
Query 2483 GCGATCTTCAAGATCTAATGATGTCTTTCTCTGGTCTTGGAGAGAAGGTTCTCGAACATT 2542
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2492 GCGATCTTCAAGATCTGATAATGTCTTTCTCTGGTCTTGGAGAGAAGGTCCTCGAACATT 2551
Query 2543 ACACTTTTGCTAAGGCAAACTTGATCAGAACAGCCGCCACAAATTATCTGCTGGACTCTG 2602
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2552 ACACTTTTGCTAAGGCAAACTTGATCAGAACAGCTGCCACGAATTATCTGCTGGACTCTG 2611
Query 2603 GTATTCAGTGGGGGGCAGCGCCTCCAGTAAAAGGCATACGAGATGCTGCTGTTGAGCTGT 2662
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2612 GTATTCAGTGGGGTGCAGCGCCTCCAGTAAAAGGCATTCGAGATGCTGCTGTTGAGCTGT 2671
Query 2663 TACACACTCTTGTAGCTGTCCATGCAGAGGTATTTGCGGGTGCCAAACCACTCCTGGACA 2722
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2672 TACACACTCTGGTTGCTGTCCATGCAGAGGTATTTGCGGGTGCCAAACCACTCCTGGACA 2731
Query 2723 AAATTCTTGGCACTTTGGTTGAAGGTCTGATTGATACTTTTCTCAGTCTTCTAGACGAAA 2782
||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 2732 AAATTCTCGGCACTTTGGTCGAAGGTCTGATTGATACTTTTCTCAGTCTTCTGGAAGAAA 2791
Query 2783 ACAGATCTGACGACCTGAGTTCAATAGATGCAAATGGTTTCTGCCAATTGATGCTTGAGC 2842
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2792 ACAGATCTGACGACCTAAGCTCAATAGATGCAAATGGTTTCTGCCAATTGATGCTTGAGC 2851
Query 2843 TCGAGTATTTTGAGACGATACTGAAGCCATATTTGACGGTTGATGCAACCGAGTCTCTAA 2902
|||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||
Sbjct 2852 TCGAATATTTTGAGACTATACTGAACCCATATTTGACTGTCGATGCAACCGAGTCCCTAA 2911
Query 2903 AGTCTCTGCAAGGAGCTGTGTTGGAGAAAGCTATAGAGAGTATAAGCGAGACAGTTGAGA 2962
| |||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||
Sbjct 2912 AATCTCTGCAAGGAGCTGTGTTAGAGAAAGCTACAGAGAGTATAAGTGAGACAGTCGAGA 2971
Query 2963 ACAACCCGGGAGGGCATCAAAGGAAACCAACACGTGGCAGTGAAGATGCAATTTCAGATG 3022
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2972 ACAACCTGGGAGGGCATCAGCGGAAACCAACACGTGGCAGTGAAGATGCAATTTCAGATG 3031
Query 3023 ACAAACAATCATCCGTATCCCCAGATGATCTCCTTGCTCTTGCACAGCAATGTACAAGCG 3082
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 3032 ACAAACAATCATCCGTATCACCAGATGATCTACTTGCTCTTGCACAGCAATGCACAAGCG 3091
Query 3083 GAATGCTTCAACTGGAGCTAGAGAAGACCCGTTTGAACAGTGCATGTTTCATTGAGACCA 3142
| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 3092 GGATGCTTCAATTGGAGCTAGAGAAGACCCGTTTGAACTGTGCATGTTTCGTTGAGACCA 3151
Query 3143 TTCCGTTGGATCCAGTGCCACCAGTAGCCAAAGCTGCCTACTCCAGAACATCAACTGATT 3202
|||||||||||||| || || ||||| ||||| ||||||||||||||||| |||||||
Sbjct 3152 TTCCGTTGGATCCAATGTCA---GTAGCTAAAGCGGCCTACTCCAGAACATCGACTGATT 3208
Query 3203 CTCCAAGCAGAAACTATAGAGAGTCACAACCAATGGGTTCTCCGGTTCAAGCCAGACCCA 3262
||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 3209 CTCCAAGCAGAAACTATAGAGAGTCGCAATCAGTGGGTTCTCCGGTTCAAGCCAGACCCA 3268
Query 3263 GACGAAGATAAGACTTCTCTTCTCCATTGTT 3293
|||||||||||||||||||||||||||||||
Sbjct 3269 GACGAAGATAAGACTTCTCTTCTCCATTGTT 3299
> Ahg476843 jgi|Araly1|476843|fgenesh2_kg.2__1973__AT1G76850.1
Length=3482
Score = 2970 bits (1608), Expect = 0.0
Identities = 2769/3318 (83%), Gaps = 126/3318 (4%)
Strand=Plus/Plus
Query 16 GATTTAGATGAAGATGAGCTACTTCAAATGGCGTTGAAGGAGCAATCTCAGAGAGATGTT 75
||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||| |
Sbjct 64 GATCTAGACGAAGATGAGCTTCTTCAAATGGCCTTGAAAGAGCAGGCTCAGAGAGATCTC 123
Query 76 ACCTATCAGAAGCCTCCTTCC-GCTAATTCCCGTAAGCCAGTCACCAATTTAGTGCAGCA 134
||||||||||| ||||||||| || | | || || || || ||||||||||||||||
Sbjct 124 ACCTATCAGAAACCTCCTTCCTCCT-CTGCTCGCAAACCTGTTGCCAATTTAGTGCAGCA 182
Query 135 GCCACGGAGA-CAAAAG--AG-GGCGGCAGCT--C-CTCCGTCTAAGGGAG-GTGCGAAG 186
||| | || | || ||| | ||| || ||| | ||||| | || | || |||| |
Sbjct 183 GCCTC-GACAGCAGAAGCCGGTGGCTGCTGCTGCCGCTCCGCCGAA-GAAGTCTGCGCCG 240
Query 187 GC-GTCAAGGAAGCCATCGATGGATGAGGATGATGAATCGGAGGTGGAATTGCTTAGCAT 245
|| || |||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GCGGT-TAGGAAGCCTTCCATGGATGAGGATGATGAGTCGGAGGTGGAATTGCTTAGCAT 299
Query 246 TTCGAGCGGGGATGAAGATGAGGGAAATG-ATCGGggaagaggtggtggtggtgacggtg 304
||||||||||||||| ||| || | | | | ||| || ||||||| ||| ||||
Sbjct 300 TTCGAGCGGGGATGATGATTTGG-AGAGGGAAAGGGAAATAGGTGGTTCCAGTGGTGGTG 358
Query 305 gcggaggtagaggaagaggt-g-gaagtggtaaggagagagg-aCGAGCGCGGAAGGAAG 361
||| || |||||||||||| | || || | ||||| ||| | ||||| ||||||| |
Sbjct 359 -CGG-GG-AGAGGAAGAGGTAGCGATGT--TCGGGAGA-AGGGAAGAGCGAGGAAGGAGG 412
Query 362 ATGATAGAGCTTGGGATGGAGTGGAGCCAGATTGCTGGAAACGGGTTAATGAAGCTGAGC 421
||||| | ||||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 413 ATGATGGTGCTTGGGATGGAGGGGAGCCTGATTGTTGGAAACGGGTTAATGAAGCTGAGC 472
Query 422 TTGCACGCAAGGTTCGTGATATGCGGGAGTCGAGAACAGCACCATCCGTGACTCAGAACC 481
| || || | ||||||||||||| |||| |||||||||||||| | ||| ||||||
Sbjct 473 TCGCTCGTAGGGTTCGTGATATGAGGGAATCGAGAACAGCACC--C-GTGGTTCAGAAAG 529
Query 482 TTGATAG-AAAGGTATCTGGAGCTGACAAGAAAGTGGTTCTTACCAGTTTGCAATCATTC 540
| || | |||| | ||| | ||| ||||||||||| ||| || |||||||| ||| ||
Sbjct 530 TAGAGGGTAAAGC-ACCTGCACCTGGCAAGAAAGTGGCTCTGACTAGTTTGCAGTCACTC 588
Query 541 CCTCGTGGCATGGAATGCATTGATCCGCTAAAATTGGGGATAATAGATAACAAGACACTG 600
|||||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||
Sbjct 589 CCTCGTGGCATGGAATGCATTGATCCACTAAAATTAGGGATCATAGACAATAAGACACTG 648
Query 601 AGATTAATCACTGAGTCATCTGAAAGTCTTTCAAAAGCTGAGAAAGTGGATAATGCACTT 660
||||||||||||||||| || | || | |||||||||||||||||||||||| | |||
Sbjct 649 AGATTAATCACTGAGTCGTCAGGCAGCCCATCAAAAGCTGAGAAAGTGGATAATACTCTT 708
Query 661 AGGGAAAAGTTGGTGTACACCTCTGACCATTTCGATCCCAAGCTATTTATTTCTCGCATT 720
||||||| ||||| ||| |||||| ||||||||||| ||||| ||| ||||||| |||
Sbjct 709 CGGGAAAAATTGGTTTACTTCTCTGATCATTTCGATCCGAAGCTGTTTCTTTCTCGTATT 768
Query 721 CACCAAGAGACAAGTGCAGCAGACTTAGAATCTGGGGCCCTTGCCCTGAAAAGTGACTTA 780
|||||||| || | ||||||||| || || |||| ||||||| ||| ||||||||||||
Sbjct 769 CACCAAGACACGACTGCAGCAGATTTGGAGGCTGGTGCCCTTGGCCTCAAAAGTGACTTA 828
Query 781 AAGGGCCGTAATCTACAAAGGAAACAATTGGTGAAAG-ATAATTTTGACTGCTTTGTCTC 839
||||| || ||||| ||| ||||||||||||| |||| | |||||||||||||| |||||
Sbjct 829 AAGGGTCGGAATCTGCAACGGAAACAATTGGT-AAAGGACAATTTTGACTGCTTCGTCTC 887
Query 840 GTGTAAAACAACAATTGATGATATTGAATCAAAACTGAAACGGATTGAAGACGACCCAGA 899
|||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 888 ATGTAAAACAACAATTGATGATATTGAGTCAAAACTTAAGCGGATTGAAGAAGACCCCGA 947
Query 900 CGGATCGGGAACTACTCATTTGTTTAATTGTATGAAGAGTGTGACATCACGGGCTAATCG 959
|| || ||||||||||||||||| ||||||||||| |||||||||||| |||| ||||
Sbjct 948 AGGGTCAGGAACTACTCATTTGTTCAATTGTATGAAAAGTGTGACATCAAGGGCCAATCT 1007
Query 960 TGCTTTTGAGCCACTTTTTGAGAGACAGGCCCAAGCTGAGAAGATCAGGTCTGTACAAGG 1019
||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1008 TGCATTTGAGCCCCTTTTTGAGAGACAGGCTCAAGCTGAGAAAATCAGGTCTGTCCAAGG 1067
Query 1020 AATGCTTCAGAGATTCCGTACACTCTTCAATTTACCCAGTATAATTCGTAGTAGTATTAG 1079
|||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 1068 AATGCTTCAGAGATTCCGGACACTGTTCAACTTACCCAGTATCATTCGTAGCAGTATTAG 1127
Query 1080 CAAAGGCGAGTATGATTTGGCTGTTCGGGAATACAAGAAGGCGAAGTCTATTGCTCTCCC 1139
||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1128 CAAGGGTGAATATGATTTGGCTGTTCGAGAATACAAGAAGGCGAAATCTATTGCTCTCCC 1187
Query 1140 TTCTCATGTAAATTTACTCAAGCGCGTACTCGAGGAGGTTGAGAAAGTGATGCAGGAGTT 1199
||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct 1188 TTCTCATGTAAATATACTCAAGCGTGTACTCGAGGAGGTTGAGAAAGTTATGCTGGAATT 1247
Query 1200 TAAAGGCACCCTTTACAGGTCTATGGAAGATCCGAAAATAGATTTTACGAGTCTGGAAAA 1259
||||||||| || |||| |||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1248 TAAAGGCACACTATACAAGTCTATGGAAGATCCGAAAATAGACTTTACAAGCCTGGAAAA 1307
Query 1260 CACTGTGAGGCTTTTGCTGGAACTGGAGCCTGAATCGGATCCTGTTTGGCATTA-CTTAA 1318
||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||
Sbjct 1308 CACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAATCTGATCCTGTGTGGCATTATCT-AA 1366
Query 1319 ATGTTCAGAATCATAGGATCCATGGGATGCTTGA-AAAGTGTACATTTGATCATGAAGCA 1377
|||||||||||||||| ||||| || ||||||| ||| ||||||| |||||||||||||
Sbjct 1367 ATGTTCAGAATCATAGAATCCACGGCTTGCTTGAGAAA-TGTACATATGATCATGAAGCA 1425
Query 1378 AGGATGGAAATTTTGCGCAAC--CAGGTGCATGAGAGAGCTC-TCTCTGACGCGAAGTGG 1434
||| ||||||||||||| ||| || | ||||||| ||| | |||| || |||||||||
Sbjct 1426 AGGGTGGAAATTTTGCGTAACGACAC-T-CATGAGAAAGC-CATCTCAGATGCGAAGTGG 1482
Query 1435 CGACAAATTCAACAAAATGGTGTT-CA-ACTTTCAGATGACACGTCTTCTA-TGGAAGAT 1491
| |||||||||||||||||| ||| || | || ||||| | | ||||||| || || ||
Sbjct 1483 CAACAAATTCAACAAAATGGCGTTTCATA-TT-CAGAT-AG-C-TCTTCTAATGAAA-AT 1536
Query 1492 AAT-CAAGTTCAAGTTGACCAACCATTAGAAGAGTCAGCGAG-GAGAGAAAAGGATGCTT 1549
||| | ||||||||||||| || || || || | | || || ||| | ||| |||
Sbjct 1537 AATGCC-GTTCAAGTTGACCTACAATCAGTGGAATTTCCCAGCGA-AGAGATTGATACTT 1594
Query 1550 TGAGGGGAAGATACATCAAGATATTGACTGCTGTAATCGTATATCATCTCCCTACGTTTT 1609
||| ||||||||||||||| | |||||||||||| | || ||||| ||||| |||||
Sbjct 1595 TGAAGGGAAGATACATCAAAAGATTGACTGCTGTGCTTGTGCATCATATCCCTGTGTTTT 1654
Query 1610 GGAAAACAGCTCTTTCTGTTTTTACTGGGAAATTTGCCAAGTCTTCCCAAGTTAATGATA 1669
||||||||||| | ||| |||| | ||| |||||||||||||| || ||||||| |||||
Sbjct 1655 GGAAAACAGCTATATCTATTTTCAGTGGAAAATTTGCCAAGTCCTCTCAAGTTACTGATA 1714
Query 1670 CTTCAGCCAGTAAAGCTGAGGAGAAGG-CGGAAGAAGCGAGATATTCAAGTCATTCTTTG 1728
||||||||| ||||||||||||||||| | | || || |||||||||| ||||||||||
Sbjct 1715 CTTCAGCCAATAAAGCTGAGGAGAAGGTCACA-GAGGCAAGATATTCAACTCATTCTTTG 1773
Query 1729 GAAGAAATTGCTGGGATGATACGCAATACCATTTCTGTTTATGAAGCAAAGGTGCAA-AG 1787
|||||| ||||||||||||||||||| || |||||||| ||||||||||||||| || ||
Sbjct 1774 GAAGAAGTTGCTGGGATGATACGCAAGACTATTTCTGTCTATGAAGCAAAGGTG-AACAG 1832
Query 1788 CAC-TTTTCATGATTTTGACGAATCATACATTCTCCACCCATATATGAGTGATACAATCA 1846
||| |||| ||||||||||||||||| |||||||| ||||| |||||||||| | ||||
Sbjct 1833 CACATTTTG-TGATTTTGACGAATCATGCATTCTCCGCCCATTTATGAGTGATGCCATCA 1891
Query 1847 AAGAAGTATCAAAAGCATGCCAAGCTTTTGAGGCCAAAGAGTCAGCTCCCCATAGTGCTG 1906
| ||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||
Sbjct 1892 ACGAAGTATCAAAAGCATGCCAAGCTTTTGAAGCCAAAGAGTCAACGCCCCACAGTGCTG 1951
Query 1907 TCATGGCACTAAGAAAAGTTAAGGTGGAAATCACTAAAATATACATCCAAAGGCTCTGCT 1966
|| | ||||| |||||||| ||| |||||||||||| || || ||||||||||| ||||
Sbjct 1952 TCGTTGCACTGAGAAAAGTCCAGGCGGAAATCACTAAGATTTATATCCAAAGGCTTTGCT 2011
Query 1967 CTTGGATGAGAGCGTCTACAGAAGAAATATCAAAGGAAGAGACGTGGATTCCAGTTTCTA 2026
|||||||||| || || || |||| ||||||||| || |||||||||||| | || ||||
Sbjct 2012 CTTGGATGAGGGCATCCACGGAAGGAATATCAAAAGAGGAGACGTGGATTTCGGTGTCTA 2071
Query 2027 TTCTTGAAAGGAACAGATCTCCATATTCCATCTCTTACCTGCCCCTTGCATTTCGTTCAA 2086
|||| |||||||| |||||||||||| ||||||||||| |||| |||||||| |||||
Sbjct 2072 TTCTAGAAAGGAATAGATCTCCATATGCCATCTCTTACTTGCCTCTTGCATTCCGTTCTG 2131
Query 2087 TTATTGTTTCTGGGATGGAACAAATTAATATGATGATTCTATCTTT-AAAAGGTGAAGCT 2145
||||||| ||||| ||||||||| | ||| |||||||||| ||| | ||||| |||||||
Sbjct 2132 TTATTGTCTCTGGCATGGAACAAGTCAATCTGATGATTCTGTCTGTCAAAAG-TGAAGCT 2190
Query 2146 GCTAGATCCGAAGATATGTTTGCGCATATTGAAGAAATTC-TGATATCTGTTAGACTTGC 2204
|| | ||| |||||||||||||| || ||||| ||||| | | |||||||||||||| ||
Sbjct 2191 GCCAAATCAGAAGATATGTTTGCCCAAATTGAGGAAAT-CGTAATATCTGTTAGACTGGC 2249
Query 2205 CTTTTTGAACTGCTTTCTGGATTTTGCTGCTCACTTGGAGCAAATTGGTGCTGACCTTTC 2264
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2250 ATTTTTGAACTGCTTTCTGGATTTTGCTGCGCACTTGGAGCAAATTGGTGCTGATCTTTC 2309
Query 2265 TCAACGCAC-TACAA-AGCGAGAGAGTTGGCAAAATGGATACTCCAATGACCACCAGGAA 2322
||| |||| | ||| | | ||| | |||| |||| ||||| || |||| || ||||||
Sbjct 2310 CCAAAGCACCT-CAAGA-CAAGATAATTGGAAAAACGGATATTCTGATGATCATCAGGAA 2367
Query 2323 GAACAATCAATCAATGC-TCCTGAAAGTGTTGTTGATCCTCACAGGCAGTTGTTGATGAT 2381
|||| |||| ||| | | | ||| ||||||||||||||||||||| |||||||||| |
Sbjct 2368 GAACCATCAGCCAACACCTACGGAA-GTGTTGTTGATCCTCACAGGCGGTTGTTGATGGT 2426
Query 2382 CTTAAGTAATATAGGTTACTGCAAAGACGAACTTGCCTCTGAGCTTTACAACAAGTACAA 2441
||||||||||||||||| |||||||| |||||||| || |||||||||||||||| |||
Sbjct 2427 GTTAAGTAATATAGGTTATTGCAAAGATGAACTTGCTTCAGAGCTTTACAACAAGTTCAA 2486
Query 2442 ATATACCTGGTTACAGTCTAG-GAGAAATGATGAAGACA-TCAGCGATCTTCAAGATCTA 2499
|||||| ||||| |||||||| || ||| ||||||||| | ||||||||||||||||||
Sbjct 2487 ATATACATGGTTGCAGTCTAGAGACAAAA-ATGAAGACAGT-AGCGATCTTCAAGATCTA 2544
Query 2500 ATGATGTCTTTCTCTGGTCTTGGAGAGAAGGTTCTCGAACATTACACTTTTGCTAAGGCA 2559
|| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 2545 ATAATGTCTTTCTCTGGACTCGGAGAGAAGGTCCTCGAGCATTACACTTTTGCTAAGGCA 2604
Query 2560 AACTTGATCAGAACAGCCGCCACAAATTATCTGCTGGACTCTGGTATTCAGTGGGGGGCA 2619
|| |||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||
Sbjct 2605 AATTTGATCAGAACAGCGGCCACAAATTATTTACTGGACTCTGGTATTCAGTGGGGATCA 2664
Query 2620 GCGCCTCCAGTAAAAGGCATACGAGATGCTGCTGTTGAGCTGTTACACACTCTTGTAGCT 2679
|| |||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2665 GCACCTCAAGTGAAAGGCATACGAGATGCGGCTGTTGAGCTGTTGCACACTCTTGTAGCT 2724
Query 2680 GTCCATGCAGAGGTATTTGCGGGTGCCAAACCACTCCTGGACAAAATTCTTGGCACTT-T 2738
|||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||| | |
Sbjct 2725 GTCCATGCGGAGGTCTTTGCTGGTGCAAAACCCCTCCTGGACAAGATTCTTGGCG-TGCT 2783
Query 2739 GGTTGAAGGTCTGATTGATACTTTTCTCAGTCTTCTAGACGAAAACAGATCT-GACGACC 2797
| | |||||||| || || |||||||| |||||| | || ||||||||||| | ||||
Sbjct 2784 GATAGAAGGTCTAATCGACACTTTTCTGAGTCTTGTGGAAGAAAACAGATCAAGT-GACC 2842
Query 2798 TGAGTTCAATAGATGCAAATGGTTTCTGCCAATTGATGCTTGAGCTCGAGTATTTTGAGA 2857
| || ||||| ||||||||||||||||||||| | ||| ||||||| || |||||||| |
Sbjct 2843 TAAGATCAATTGATGCAAATGGTTTCTGCCAACTAATGTTTGAGCTTGAATATTTTGAAA 2902
Query 2858 C-GATACTGAAGCCATATTTGACG-GTTGATGCAACCGAGTCTCT-AAAGTCTCTGCAAG 2914
| | ||||||| |||||||| || | | ||||||||||||||| ||| ||||| ||||
Sbjct 2903 CAG-TACTGAATCCATATTTTACAAGC-GCTGCAACCGAGTCTCTTAAA-TCTCTACAAG 2959
Query 2915 GAGCTGTGTTGGAGAA-AGCTATAGAGAGTATAAGCGA-GACAGTTGAGAACAACCCGGG 2972
|| | |||||||| || |||||||||||| || || || | ||||||||| | |||
Sbjct 2960 GAACCGTGTTGGA-AATAGCTATAGAGAGCATCAGTGAAG-CAGTTGAGA-C--CCC--- 3011
Query 2973 AGGGCATCAAAGGAA-ACCAACACGTGGCAGTGAAGATGCAATTTCAGATGACAAACAAT 3031
||||||| || | | |||||| |||||||||||||| || ||||||||||||| ||||
Sbjct 3012 AGGGCAT-AATCGTAGACCAACTCGTGGCAGTGAAGACACAGTTTCAGATGACAAGCAAT 3070
Query 3032 CATCCGTATCCCCAGATGATCTCCTTGCTCTTGC-ACAGCAATGTACAAGCGGAAT-GCT 3089
| | || || ||||||| ||||| ||||| | | | || ||| ||| || ||| |||
Sbjct 3071 C-T--GTTTCAGCAGATGACCTCCTCGCTCTAACGAAA-CAGTGTTCAAACG-AATTGCT 3125
Query 3090 TCAACTGGAGCTAGAGAAGACC-CGTTTGAACAGTGCATG-TTT-CATTGAGACCATTCC 3146
|||| ||| | |||| || | ||| | |||| ||||| ||| || ||| | | ||
Sbjct 3126 ACAACCAGAGTTGGAGA-GAACTCGTGTAAACACAGCATGCTTTGCA--GAGTCAACACC 3182
Query 3147 GTTGGA-TCCAGTGCCACCAGTAGCCAAAGCTGCCTACTC--C----AGAACATCAACTG 3199
|| || || | ||| ||| || ||||||| ||||||| | ||| ||||| ||
Sbjct 3183 ATTAGAGTCAAC-GCCTCCATTACCCAAAGCAACCTACTCTTCCTTTAGAGGATCAA-TG 3240
Query 3200 -ATTCTCCAAGCAGAAACTATAGAGAG-TCACAACCAA-TGGGTTCTCCGGTTCAA-GCC 3255
||||||||||||||||||| |||| | |||||| || ||| |||||| || || |||
Sbjct 3241 GATTCTCCAAGCAGAAACTACAGAG-GCTCACAATCATCTGG-TTCTCCCATT-AATGCC 3297
Query 3256 AGACCCAGACGAAGATAA 3273
|||||||| ||||||||
Sbjct 3298 CGACCCAGAAGAAGATAA 3315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132364238894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5