BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21190.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472357 jgi|Araly1|472357|fgenesh2_kg.1__2311__AT1G21190.1 990 0.0
Ahg927080 jgi|Araly1|927080|scaffold_202641.1 333 1e-90
> Ahg472357 jgi|Araly1|472357|fgenesh2_kg.1__2311__AT1G21190.1
Length=628
Score = 990 bits (536), Expect = 0.0
Identities = 600/630 (95%), Gaps = 8/630 (1%)
Strand=Plus/Plus
Query 12 CAATTTCAAAACCCTCGGAGAAGTTATAATCAG-AAAATGTCAGTCGAGGAAGACGCCAC 70
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1 CAATTTCAAAACCCTCGGAGAAGTTTTAATCAGAAAAATGTCCGTCGAGGAAGACGCCAC 60
Query 71 CGTTAGAGAGCCACTCGATCTGATTCGGTTGAGTATCGAAGAGAGGATCTATGTCAAGCT 130
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CGTTAGAGAGCCACTCGATCTGATTCGGCTGAGTATCGAAGAGAGGATCTATGTCAAGCT 120
Query 131 CCGATCTGACCGTGAACTCCGCGGCAAGCTTCACGCTTTTGATCAGCATTTGAATATGAT 190
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGATCAGACCGTGAACTCCGCGGCAAGCTTCACGCTTTTGATCAGCATTTGAATATGAT 180
Query 191 TCTGGGTGATGTTGAAGAGGTTATTACGACTATAGAAATCGACGACGAGACATATGAAGA 250
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 181 TCTGGGTGATGTTGAAGAGGTTATTACGACTGTAGAAATCGACGACGAGACATACGAAGA 240
Query 251 GATTGTTCGGACAACGAAGCGAACGGTACCGTTTCTATTCGTGAGAGGAGATGGAGTGAT 310
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GATTGTTCGGACAACTAAGCGAACGGTTCCGTTTCTATTCGTGAGAGGAGATGGAGTGAT 300
Query 311 ATTGGTGTCACCGCCTTTGAGGACGAC--C-TAAATGTTCTTGTGTACTGGGATCGGAGT 367
||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||
Sbjct 301 ATTGGTGTCACCGCCTTTGAGGACGACGACCTAAATGTTCTTGTGTACTGGGATCTGTGT 360
Query 368 TAACAAATCTGGCGCTGAGTAAAAGCACTTTTTTCTGATTACTTGGCTTTTGAATTTGTA 427
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 361 TAACAAATCTGGAGCTGAGTAAAACCACTTTTTTCTGATTACTTGGCTTTTGAATT-GTA 419
Query 428 ATTGTGTGGTATGTTTTTCTTTGTTGTCAAACATTGAAACCGAATGTAGCATTCGAAT-C 486
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 420 ATTGTGTGGTATGTTTTTCTTTGTTGTCAAACATTGAAACCGAATGTAGCTTTCGAATTC 479
Query 487 TTGGTAATGGG-TGCCTCGTTATAGTAGAATCAGTGTAACATACTTCGTATTGTGACTTT 545
| ||| ||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 480 T-GGTTATGGGCTGCTTCGTTATAGTAGAAGCAGCGTAACATGCTTCGTATTGTGACTTT 538
Query 546 CTTACCGTTTACGATCGGATTTAGTTTCGTTTTCTGGTTTGGTGTAGTTTTCTCTAAAGA 605
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CTTACCGTTTATGATCGGATTTAGTTTCATTTTCTGGTTTGGTGTAGTTTTCTCTAAAGA 598
Query 606 TTTGTATACTTCCTCAAACTCATTGATTTC 635
||||||| ||| ||||||||||||||||||
Sbjct 599 TTTGTATTCTTTCTCAAACTCATTGATTTC 628
> Ahg927080 jgi|Araly1|927080|scaffold_202641.1
Length=338
Score = 333 bits (180), Expect = 1e-90
Identities = 253/289 (88%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 47 AATGTCAGTCGAGGAAGACGCCACCGTTAGAGAGCCACTCGATCTGATTCGGTTGAGTAT 106
|||||| | |||||||||||||||||| || |||||||| ||||||||| || ||||| |
Sbjct 20 AATGTCCGGCGAGGAAGACGCCACCGTGAGGGAGCCACTAGATCTGATTAGGCTGAGTCT 79
Query 107 CGAAGAGAGGATCTATGTCAAGCTCCGATCTGACCGTGAACTCCGCGGCAAGCTTCACGC 166
||| ||||| ||||||||||||||||| || ||||| || || |||||||||||||||||
Sbjct 80 CGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAGCTTCGCGGCAAGCTTCACGC 139
Query 167 TTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAGGTTATTACGACTA-TAG 225
||||||||||||||||||||||||||||||||||||||||| ||| || || | |||
Sbjct 140 GTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAACTATCACAAC-AGTAG 198
Query 226 AAATCGACGACGAGACATATGAAGAGATTGTTCGGACAACGAAGCGAACGGTACCGTTTC 285
||||||| ||||||||||||||||||||||||||||| || ||||| ||| | |||||
Sbjct 199 AAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGCGGACGATTGAGTTTC 258
Query 286 TATTCGTGAGAGGAGATGGAGTGATATTGGTGTCACCGCCTTTGAGGAC 334
|||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct 259 TATTTGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGAGGAC 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5