BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21240.1
Length=2354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921094 jgi|Araly1|921094|scaffold_102375.1 1690 0.0
Ahg472363 jgi|Araly1|472363|fgenesh2_kg.1__2317__AT1G21270.1 1672 0.0
Ahg921093 jgi|Araly1|921093|scaffold_102374.1 1642 0.0
Ahg472361 jgi|Araly1|472361|fgenesh2_kg.1__2315__AT1G21245.1 604 7e-172
Ahg911962 jgi|Araly1|911962|Al_scaffold_0001_2216 368 1e-100
Ahg905733 jgi|Araly1|905733|Al_scaffold_0003_2861 364 1e-99
> Ahg921094 jgi|Araly1|921094|scaffold_102375.1
Length=1770
Score = 1690 bits (915), Expect = 0.0
Identities = 1397/1622 (86%), Gaps = 63/1622 (4%)
Strand=Plus/Plus
Query 1 ATGAAGTTCCAGGAGGGTGTGTTCTTGGTGGTTATTTTC-T-T-CCTTGCATATACTCAG 57
|||||||| ||||||||||||| |||||||| ||||||| | | |||||||||||| |||
Sbjct 27 ATGAAGTTACAGGAGGGTGTGTCCTTGGTGGCTATTTTCTTCTCCCTTGCATATACGCAG 86
Query 58 CTTGTGAAGGGGCAACATCAACCTCGCGAAGATTG-TAAACTTAAATGTGGAAACGTCAC 116
|| ||||| |||||||||||||||| ||| ||||| |||| ||||||||| ||| |||
Sbjct 87 CTGGTGAACGGGCAACATCAACCTCCCGAGGATTGCCAAAC-TAAATGTGGCAACATCAA 145
Query 117 AATAGAGTACCCTTTTGGTATTTCTACAGGTTGTTACTATCCCGGAGATGATAATTTCAA 176
||| |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 146 AATCGAGTACCCTTTTGGCATTTCTTCAGGTTGTTACTATCCCGGAGATGATAGTTTCAA 205
Query 177 TCTCACCTGTGTCGTGGAAGAGAAGCTACTACTCTTTGGCATC-A--TTCAAGTGACCAA 233
||||||||| | || | |||||||||| || || | |||||| | || ||||| ||
Sbjct 206 TCTCACCTGCGACGAGAAAGAGAAGCT-CT--TCATAGGCATCAACGTTGAAGTGGTGAA 262
Query 234 TATTT-CTCACAGTGGCCATG-TAAGTGTACTGTT-TGAACGATTCTCTGAATGC-T--A 287
||| | |||| | ||| | ||||||| ||||| | | ||||| ||||||||| | |
Sbjct 263 -CTTTAATGACAGCGCCCA-GCTAAGTGTTCTGTTCT-ACCGATTTTCTGAATGCATCGA 319
Query 288 CGAGCAGAAAAATGAGACTAATGGAACTGCCCTCGGGTATCAGCTGGGTAGTAGTTTCTC 347
|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 320 CGAGCAGAGTAATGAGACTAATGGAACTGCCCTCGAGTATCAGCTGGGTGGTAGTTTCTC 379
Query 348 TCTCTCCTCCAACAACAAGTTTACTTTAGTAGGATGTAACGCTTTATCACTTTTGAGCAC 407
| |||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct 380 TTTCTCCTCCAAGAACAAGTTTACTTTAGTAGGCTGTAACGCTTTAGCACTTCTGAGCAC 439
Query 408 TTTTGGAAAGCAAAACTACTCAACTGGATGCTTGTCATTATGCAATTCTCAACCAGAGGC 467
|||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 440 TTTTGGGAAGCAAAACTACTCAACTGGATGCTTGTCATTATGCGATTCTCAACCGGAGGC 499
Query 468 AAATGGAAGATGTAATGGTGTAGGTTGCTGCACAACAGAGGACTTCTCTGTCCCGTTCGA 527
||||| || | ||||||||||||||| |||| ||| | | || | || | || ||
Sbjct 500 AAATGAAATACGTAATGGTGTAGGTTTCTGC-CAA-ACA-GA-----C-GT--C-TTTGA 547
Query 528 TAGCGATACATTCCAATTTGGCTCAGTTCGCTTGAG-AAACCAAGTTAATAATTCCTTAG 586
| || ||| | ||||||||||||||| |||||| || ||||||| ||||| ||||| |||
Sbjct 548 TGGCTATAAAGTCCAATTTGGCTCAGCTCGCTT-AGCAAACCAAATTAATCATTCCCTAG 606
Query 587 ATCTATTTAATACTTCGGTATATCAGTTTAATCCTTGCACCTACGCTTTTCTCGTTGAAG 646
||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 607 -----TTT-ATACTTCGGTATATCAATTTAATCCTTGCACCTACGCCTTTCTCGTCGAAG 660
Query 647 ATGGTAAGTTTAACTTCGATTCTTCAAAAGATCTTAAGAATCTGAGGAATGTCAC-GAGG 705
||||||||||| ||||| | || | ||||||||| | ||||| |||||||||| ||
Sbjct 661 ATGGTAAGTTTGACTTCTCTGCTACGGAAGATCTTAGGGATCTGCGGAATGTCACGGA-T 719
Query 706 TTCCCTGTGGCACTAGATTGGTCTATTGGAAACCAGACATGTGAGCAAGCTGGAAGCACA 765
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 TTCCCTGTGGCACTGGATTGGTCTATTGGAAACCAGACATGCGAGCAAGCTGGAAGCACA 779
Query 766 AGAATATGCGGTAAGAACAGCTCATGTTACAATTCTACTACTAGAAACGGGTATATCTGC 825
|| ||||| ||| ||||||| |||||| ||||||||||||| ||| ||| |||||
Sbjct 780 AGCATATGTGGTGGGAACAGCACATGTTTTGATTCTACTACTAGGCCCGGATATGTCTGC 839
Query 826 AAATGTAATGAAGGTTATGATGGGAATCCATACCGTTCAGAGGGTTGCAAAGACATCGAT 885
|||||||| | ||||| ||||||| || |||| | |||| |||||| |||||||||||
Sbjct 840 AAATGTAAAGGCGGTTACCATGGGAACCCCTACCATCCAGACGGTTGCCAAGACATCGAT 899
Query 886 GAGTGTATTAGTGATACACATAACTGTTCGGATCCAAAAACCTGTAGAAACAGGGATGGA 945
|||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 900 GAGTGTATTATTGATACACATAACTGTTCGGATCCCAAAACCTGTAAAAACAGGGATGGA 959
Query 946 GGCTTCGATTGTAAGTGTCCATCTGGTTACGAC-----T-----TA-A-ACTCCAGTATG 993
||||||||||||||||| |||||||||||| || | || | |||||| ||||
Sbjct 960 GGCTTCGATTGTAAGTGCCCATCTGGTTACAACTTAATTACCACTATACACTCCACTATG 1019
Query 994 -AGCTGCACGAGGCCCGAATACA--A-ACGGACTCGAATTTTTCTTGTAATCATAATCGG 1049
|| ||||||||||||||||||| | |||||||| || ||||||||||| || |||||
Sbjct 1020 AAG-TGCACGAGGCCCGAATACATTAGACGGACTCAAAGTTTTCTTGTAACCACCATCGG 1078
Query 1050 CGTCTTGGTCCTCCTGCTT-GCTGCGATCTGTATACAACATGCAACGAAGCAAAGGAAGT 1108
| ||||||||||||||||| || | ||| ||| |||||| ||||| ||||| |||||
Sbjct 1079 CTTCTTGGTCCTCCTGCTTGGC-GTTATCAGTACACAACACGCAACAAAGCACCGGAAGG 1137
Query 1109 ATACCAAGCTCCGACGACAATTCTTTGAGCAAAATGGTGGTGGCATGTTGATACAGCGAC 1168
|| |||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1138 ATGCCAAGCTCCGACGACAATTCTTTGAGCAAAATGGCGGCGGCATGTTGATACAGCAAA 1197
Query 1169 TTTCAGGAGCAGGGTTGTCAAACATTGATTTCAAAATCTTTACTGAGGAAGGCATGAAAG 1228
| ||| ||| ||||| |||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 1198 TCTCAAGAGTAGGGTCATCAAACATTGATTTCAAAATCTTTACCGAGGAAAGCATGAAGG 1257
Query 1229 AGGCAACTAATGGCTATGATGAGAGCAGAATCTTGGGCCAGGGAGGTCAAGGAACAGTCT 1288
||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1258 AGGCAACTAATGGTTATGATGAGAGCAGAATATTGGGTCAGGGAGGCCAAGGAACAGTCT 1317
Query 1289 ACAAAGGGATATTGCCGGACAACACTATC-GTTGCTATAAAGAAAGCTCGGCTTGCAGAC 1347
|||||||||||||||| || || | | | ||||||||||||||||||||||||| ||||
Sbjct 1318 ACAAAGGGATATTGCCAGATAATTCCA-CAGTTGCTATAAAGAAAGCTCGGCTTGGAGAC 1376
Query 1348 AGTAGACAAGTAGATCAGTTCATCCACGAAGTGCTCGTGCTTTCACAAATTAACCACAGG 1407
|||| |||||||| || ||| |||| ||| || ||||||||||||||||||||||||||
Sbjct 1377 CGTAGCCAAGTAGACCAATTCGTCCATGAAATGATCGTGCTTTCACAAATTAACCACAGG 1436
Query 1408 AACGTGGTCAAGATCTTGGGTTGCTGTCTAGAGACTGAAGTCCCCTTGTTGGTCTATGAA 1467
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 AATGTGGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAATTCCCCTTGTTGGTCTATGAA 1496
Query 1468 TTCATTACCAATGGCACCCTTTTCGATCACTTGCACGGTTCCATTTTTGATTCTTCTCTT 1527
|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1497 TTCATTACCAGTGGCACCCTTTTCGATCACTTGCACGGTTCCATGTTTGCTTCTTCTCTT 1556
Query 1528 ACATGGGAACACCGCCTCAGAATAGCGATAGAAGTCGCTGGAACTCTTGCTTATCTTCAC 1587
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 1557 ACATGGGAACACCGCCTAAGGATAGCGATAGAAGTCGCTGGAACTCTAGCATATCTTCAC 1616
Query 1588 TC 1589
||
Sbjct 1617 TC 1618
> Ahg472363 jgi|Araly1|472363|fgenesh2_kg.1__2317__AT1G21270.1
Length=2396
Score = 1672 bits (905), Expect = 0.0
Identities = 1511/1795 (84%), Gaps = 76/1795 (4%)
Strand=Plus/Plus
Query 608 ATCAGTTTAATCCTTGCACCTACGCTTTTCTCGTTGAAGATGGTAAGTTTAACTTCGATT 667
||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||
Sbjct 561 ATCTGTTTAATCCTTGCACCTACGCCTTTCTCGTTGAAGATGGTAAGTTTGATTTCTATG 620
Query 668 CTTCAAAAGATCTTAAGAATCTGAGGAATGTCACGAGGTTCCCTGTGGCACTAGATTGGT 727
||| ||||||| || ||||| || |||| || | ||||||||| | |||||||||||
Sbjct 621 CTTTGGAAGATCTCAACAATCTCCGGTATGTTACTACGTTCCCTGTAGTACTAGATTGGT 680
Query 728 CTATTGGAAACCAGACATGTGAGCAAGCTGGAAGCACAAGA-ATATGCGGTAAGAACAGC 786
||||||||||| ||||||| ||||||| || | ||| || | ||||| ||| ||||||
Sbjct 681 CTATTGGAAACGAGACATGCGAGCAAGTTGTAGGCAGAA-ACATATGTGGTGGGAACAG- 738
Query 787 T-CATGTTACAATTCTACTAC-TAGAAACGGGTATATCTGCAAATG-TAATGAAGGTTAT 843
| |||||| ||||||||| | | ||| |||||||| ||||||||| | | ||||||| |
Sbjct 739 TACATGTTTTAATTCTACT-CGTGGAACCGGGTATAACTGCAAATGTTTA-GAAGGTTTT 796
Query 844 GATGGGAATCCATACCGTT-CAGAGGGTTG-CAAAGACATCGATGAGTGTATTAGTGA-T 900
|| ||||||||||||| || || | ||||| | |||||||| |||||||||||| | | |
Sbjct 797 GAGGGGAATCCATACC-TTCCAAACGGTTGTC-AAGACATCAATGAGTGTATTAAT-AGT 853
Query 901 ACACATAACTGTTCGGATCCAAAAACCTGTAG-AAACAGGGATGGAGGCTTCGA-TTGTA 958
| ||||||||||||||| || | |||||| | ||| | | | ||| ||||| | |||||
Sbjct 854 AGACATAACTGTTCGGAGCCTAGTACCTGT-GAAAATATGAAGGGAAGCTTC-ACTTGTA 911
Query 959 AGTGTCCATCTGGTTA-CGACTTAA-A--CTCC-AGTA--TG-AGCT-G-CACG--AGGC 1006
| || ||||||||||| || | || | | || | || || | || | | | ||||
Sbjct 912 ACTGCCCATCTGGTTACCG-C-AAAGATTCCCCTAATAGCTGTA-CTCGTAAAGTTAGGC 968
Query 1007 CCGAATAC---AAACGGACTCGAATTTTTCTTGTAATCATAATCGGCGTCTTGGTCCTCC 1063
| |||||| | | |||||| ||||||||||| || || |||||| ||| |||| |||
Sbjct 969 CTGAATACTTTAGATGGACTCAAATTTTTCTTGGAACCACCATCGGCTTCTCGGTCATCC 1028
Query 1064 TGCTT-GCTGCGATCTGTATACAACATGCAACGAAG-CA-AAGGAAGTATACCAAGCTCC 1120
||||| || |||||| ||||||| | || || || | |||| | ||| ||||||
Sbjct 1029 TGCTTGGC-ATTATCTGTGTACAACA-GAAAATTAGACACCA-GAAGGACACCGAGCTCC 1085
Query 1121 GACGACAATTCTTTGAGCAAAATGGTGGTGGCATGTTGATACAGCGACTTTCAGGAGCAG 1180
||| | ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||||
Sbjct 1086 GACAAAAATTCTTCGAGCAAAACGGTGGTGGCATGTTGATAGAGCGAGTCTCAGGAGCAG 1145
Query 1181 GGTTGTCAAACATTGATTTCAAAATCTTTACTGAGGAAGGCATGAAAGAGGCAACTAATG 1240
|| ||||| ||||| |||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 1146 GGCCATCAAATGTTGATGTCAAAATCTTCACTGAGGAAGGAATGAAGGAAGCAACTAATG 1205
Query 1241 GCTATGATGAGAGCAGAATCTTGGGCCAGGGAGGTCAAGGAACAGTCTACAAAGGGATAT 1300
| |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1206 GTTATGATGAGAGCAGAATCCTGGGTCAGGGAGGCCAAGGAACAGTCTACAAAGGGATAT 1265
Query 1301 TGCCGGACAACACTATCGTTGCTATAAAGAAAGCTCGGCTTGCAGACAGTAGACAAGTAG 1360
|||| ||||| | || ||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 1266 TGCCAGACAATTCCATAGTTGCTATAAAGAAAGCTCGGCTTGGAGACTGTAGCCAAGTAG 1325
Query 1361 ATCAGTTCATCCACGAAGTGCTCGTGCTTTCACAAATTAACCACAGGAACGTGGTCAAGA 1420
| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1326 AGCAGTTCATCAACGAAGTGCTCGTGCTTTCACAAATCAACCATAGGAACGTGGTCAAGC 1385
Query 1421 TCTTGGGTTGCTGTCTAGAGACTGAAGTCCCCTTGTTGGTCTATGAATTCATTACCAATG 1480
||||||| || ||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1386 TCTTGGGCTGTTGTCTAGAGACTGAAGTTCCCTTGTTGGTCTATGAGTTCATCACCAATG 1445
Query 1481 GCACCCTTTTCGATCACTTGCACGGTTCCATTTTTGATTCTTCTCTTACATGGGAACACC 1540
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1446 GCACCCTTTTCGATCACTTGCACGGTTCCATGTTTGATTCTTCGCTTACATGGGAACACC 1505
Query 1541 GCCTCAGAATAGCGATAGAAGTCGCTGGAACTCTTGCTTATCTTCACTCCTCTGCTTCTA 1600
| || || ||||| |||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1506 GTCTGAGGATAGCAATAGAAATCGCTGGAACTCTTGCATATCTTCACTCCTCTGCTTCCA 1565
Query 1601 TTCCAATCATCCATC-GCGATATCAAAACTGCAAATATTCTCTTGGATGAAAACTTAACT 1659
||||||||||||| | | |||||||| ||||| ||||||||| | |||||||||||||||
Sbjct 1566 TTCCAATCATCCA-CAGAGATATCAAGACTGCTAATATTCTCCTAGATGAAAACTTAACT 1624
Query 1660 GCAAAAGTAGCCGACTTTGGCGCTTCTAAG-CTTATACCAATGGATAAAGAGCAGCTCAC 1718
|||||||||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||
Sbjct 1625 GCAAAAGTAGCCGACTTTGGTGCTTC-AAGGCTGATACCGATGGATAAAGAGCAGCTCAC 1683
Query 1719 AACTATGGTGCAAGGCACTCTAGGCTATTTAGACCCAGAATACTATACCACAGGGCTTCT 1778
||| |||||||||||||||||||| || ||||||||||| ||||| | ||||||||||||
Sbjct 1684 AACAATGGTGCAAGGCACTCTAGGTTACTTAGACCCAGAGTACTACAACACAGGGCTTCT 1743
Query 1779 GAACGAGAAGAGCGATGTGTATAGCTTTGGGGTAGTCCTCATGGAACTGCTCTCAGGTCA 1838
|||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1744 GAACGAAAAGAGCGATGTTTACAGCTTCGGGGTAGTCCTAATGGAACTGCTCTCAGGTCA 1803
Query 1839 AAAGGCATTGTGCTTTGAACGGCCACAG-GCTTCAAAACATTTGGTGAGTTACTTTGTTT 1897
||||||||||||||| ||| | ||||| ||| |||||||| ||||||| | ||||| ||
Sbjct 1804 AAAGGCATTGTGCTTCGAAAGACCACAATGCT-CAAAACATCTGGTGAGCTGCTTTGCTT 1862
Query 1898 CTGCCACGGAAGAGAATAGGTTGCATGAGATTATTGACGACCAAGTGTTGAACGAGGATA 1957
||||||| |||| |||||||| |||||||||||||| | |||||| ||||||||||||
Sbjct 1863 CTGCCACAAAAGATAATAGGTTCCATGAGATTATTGATGGGCAAGTGATGAACGAGGATA 1922
Query 1958 ATCTGAAGGAGATCCAGGAAGCTGCAAGAATTGCTGCAGA-GTGTACAAGGCTAATGGGA 2016
||| || ||||||||||||||||||||||||||| | | ||||||||| | | ||||
Sbjct 1923 ATCAGAGGGAGATCCAGGAAGCTGCAAGAATTGCAA-ATAAGTGTACAAGATTGACGGGA 1981
Query 2017 GAGGAAAGGCCAAGGATGAAAGAAGTAGCTGCAAAGCTAGAAGCCTTGAGGGTCGAGAA- 2075
|| |||||||||||||||||||||||||||||| || | || ||||||| ||| | ||
Sbjct 1982 GAAGAAAGGCCAAGGATGAAAGAAGTAGCTGCAGAGTTGGAGGCCTTGAAAGTCAA-AAC 2040
Query 2076 AACCAAACATAAGTGGTCGGATCAGTATCCTGAGG-AG---A-AT-GAACACTTGATTGG 2129
||| |||||||||||||||||||||||||||||| || | || ||| ||||| | ||
Sbjct 2041 AACTAAACATAAGTGGTCGGATCAGTATCCTGAGACAGGGGAGATTGAAAACTTGCTCGG 2100
Query 2130 TGGTCACATCTTGTCTGCACAAGGCGAA-ACCAGTAGCAGCATTGGCTATGATAGCATCA 2188
|| ||| ||||| || |||||||| || ||||||||| | | || ||||| |||||||
Sbjct 2101 TGTTCAAATCTTATCAACACAAGGC-AATACCAGTAGCCG--T-GGTTATGACAGCATCA 2156
Query 2189 AAAATGTAGCAATATTGGACATTGAAACTGGCCGCTGATATT---GCTC---ACAAAATC 2242
| ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||
Sbjct 2157 AGAATGTAGCAATATCGGACATTGAAGCTGGCCGCTGATATTAATGCTCTTGACAAATTC 2216
Query 2243 ACATGTATCTCTTTTGTTTGTaaaaaaaGAAAACCACTTATTTGTTGCTTC-ATCAATA- 2300
||||| ||||||||| ||| || ||| ||||||||||| ||||||| | | |||||||
Sbjct 2217 ACATGCATCTCTTTTCTTTATATTAAATGAAAACCACTTCTTTGTTG-TACCATCAATAA 2275
Query 2301 TGCTTTGAGAGC-TTGTTTGTTCATCATCAATAATCATGTTCATATTTTCCTTTA 2354
||||||||||| || ||||| | ||||||||||||||||||||||| ||||||
Sbjct 2276 TGCTTTGAGAGAATT-TTTGTAC--CATCAATAATCATGTTCATATTTCCCTTTA 2327
> Ahg921093 jgi|Araly1|921093|scaffold_102374.1
Length=2248
Score = 1642 bits (889), Expect = 0.0
Identities = 1412/1658 (85%), Gaps = 62/1658 (4%)
Strand=Plus/Plus
Query 613 TTTAATCCTTGCACCTACGCTTTTCTCGTTGAAGATGGTAAGTTTAACTTCGA-TTCTTC 671
||||||||||||| |||||||||| |||||||||| |||| |||||||||| | ||||||
Sbjct 597 TTTAATCCTTGCAGCTACGCTTTTTTCGTTGAAGACGGTATGTTTAACTTC-AGTTCTTC 655
Query 672 AAAAGATCTTAAGAATCTGAGGAATGTCACGAGGTTCCCTGTGGCACTAGATTGGTCTAT 731
| ||||||||||||||||| | |||||||| |||||||||||| |||||||||||||||
Sbjct 656 AGAAGATCTTAAGAATCTGCGAAATGTCACAAGGTTCCCTGTGTTACTAGATTGGTCTAT 715
Query 732 TGGAAACCAGACATGTGAGCAAGCTGGAAGCACAAGA-ATATGCGGTAAGAACAGCTCAT 790
||||||| ||||||||||| ||| | | ||| || | ||||| ||| ||||||| |||
Sbjct 716 TGGAAACGAGACATGTGAGAAAGTTTTAGGCAGAA-ACATATGTGGTGGGAACAGCACAT 774
Query 791 GTTACAATTCTACTAC-TAGAAACGGG-TATATCTGCAAATG-TAATGAAGGTTATGATG 847
||| |||||| | | | |||| ||| |||| ||||||||| | | || |||| |||||
Sbjct 775 GTTTTGATTCTAGT-CGTGGAAA-GGGTTATAACTGCAAATGTTTA-GATGGTTTTGATG 831
Query 848 GGAATCCATACCGTTCAGAGGGTTGCAAAGACATCGATGAGTGTATTAGT-GATACACAT 906
||||||| |||| |||||| || ||| |||||||| ||||||||| || | | || ||||
Sbjct 832 GGAATCCTTACCTTTCAGACGGCTGCCAAGACATCAATGAGTGTACTACTCG-TAGACAT 890
Query 907 AACTGTTCGGATCCAAAAACCTGTAG-AAACAGGGATGGAGGCTTCGATTGTAAGTGTCC 965
|| ||||||||| | | |||||| | ||||| | |||| ||||| |||||||||| ||
Sbjct 891 AATTGTTCGGATACTAGCACCTGT-GAAAACACGCTTGGAAGCTTCCATTGTAAGTGCCC 949
Query 966 ATCTGGTTACGACTT-AA-A-CTCCAGTATGAGCTGCA-CGAGGC-CC----GAATA--C 1014
||||||||| ||||| || | | | | ||||||||||| || | || ||| | |
Sbjct 950 ATCTGGTTATGACTTAAATACCACTACTATGAGCTGCAGTGACACACCTAAAGAAGAGCC 1009
Query 1015 -AA--AC---GGACTCGA--A-T-TT-TTCTTGTAATCATAATCGGCGTCTTGGTCCTCC 1063
|| || ||| | || | | || |||||| || || || ||| ||||| || |||
Sbjct 1010 TAAGTACTTAGGA-TGGACTACTGTTCTTCTTGGAACCACCATTGGCTTCTTGATCATCC 1068
Query 1064 TGCTTGCTGCGA-T--CTGTATACAACATG-CAACGAAGCAAAGGAAGTATACCAAGCTC 1119
||||| | | | | || ||||||||| | || |||||| |||| | ||| ||||
Sbjct 1069 TGCTT-AT-C-ATTAGCTATATACAACA-GAAAATGAAGCACCGGAAAAACACCGAGCTG 1124
Query 1120 CGACGACAATTCTTTGAGCAAAATGGTGGTGGCATGTTGATACAGCGACTTTCAGGAGCA 1179
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 CGACAACAATTCTTCGAGCAAAATGGTGGCGGCATGTTGATACAGCGACTTTCAGGAGCA 1184
Query 1180 GGGTTGTCAAACATTGATTTCAAAATCTTTACTGAGGAAGGCATGAAAGAGGCAACTAAT 1239
||| ||||| |||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 1185 GGGCCATCAAATATTGATGTCAAAATCTTTACTGAGGAAGGCATGAAGGAAGCAACTAAT 1244
Query 1240 GGCTATGATGAGAGCAGAATCTTGGGCCAGGGAGGTCAAGGAACAGTCTACAAAGGGATA 1299
|| |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 1245 GGTTATGATGAGAGCAGAATCCTGGGGCAGGGAGGCCAAGGAACAGTCTACAAAGGGATA 1304
Query 1300 TTGCCGGACAACACTATC-GTTGCTATAAAGAAAGCTCGGCTTGCAGACAGTAGACAAGT 1358
|||| |||||| | | | ||||||||||||||||||||||||| |||| |||| |||||
Sbjct 1305 CTGCCAGACAACTCCA-CAGTTGCTATAAAGAAAGCTCGGCTTGGAGACCGTAGCCAAGT 1363
Query 1359 AGATCAGTTCATCCACGAAGTGCTCGTGCTTTCACAAATTAACCACAGGAACGTGGTCAA 1418
||| ||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 1364 AGAGCAGTTCATCAACGAAGTTCTTGTGCTTTCACAAATCAACCATAGGAACGTGGTCAA 1423
Query 1419 GA-TCTTGGGTTGCTGTCTAGAGACTGAAGTCCCCTTGTTGGTCTATGAATTCATTACCA 1477
| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 1424 -ACTCTTGGGCTGCTGTCTAGAGACTGAAGTTCCCTTGTTGGTCTATGAGTTCATTTCCA 1482
Query 1478 ATGGCACCCTTTTCGATCACTTGCACGGTTCCATTTTTGATTCTTCTCTTACATGGGAAC 1537
|||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1483 GTGGCACTCTTTTCGATCACTTGCACGGTTCTATGTTTGATTCTTCGCTTACATGGGAAC 1542
Query 1538 ACCGCCTCAGAATAGCGATAGAAGTCGCTGGAACTCTTGCTTATCTTCACTCCTCTGCTT 1597
|||| || || |||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 1543 ACCGTCTGAGGATAGCGATAGAAATCGCTGGAACTCTAGCGTATCTTCACTCCTCTGCTT 1602
Query 1598 CTATTCCAATCATCCATCGCGATATCAAAACTGCAAATATTCTCTTGGATGAAAACTTAA 1657
||||||| ||||||||||| ||| |||| || || |||||||||||||||||||||||||
Sbjct 1603 CTATTCCGATCATCCATCGGGATGTCAAGACCGCTAATATTCTCTTGGATGAAAACTTAA 1662
Query 1658 CTGCAAAAGTAGCCGACTTTGGCGCTTCTAA-GCTTATACCAATGGATAAAGAGCAGCTC 1716
||||||||||||| |||||||| ||||| || ||| ||||| ||||| |||||||||||
Sbjct 1663 CTGCAAAAGTAGCTGACTTTGGTGCTTC-AAGGCTGATACCGATGGACCAAGAGCAGCTC 1721
Query 1717 ACAACTATGGTGCAAGGCACTCTAGGCTATTTAGACCCAGAATACTATACCACAGGGCTT 1776
||||| | ||||||||| ||||| ||||||||||||||||||||||| | ||||||||||
Sbjct 1722 ACAACAACGGTGCAAGGAACTCTTGGCTATTTAGACCCAGAATACTACAACACAGGGCTT 1781
Query 1777 CTGAACGAGAAGAGCGATGTGTATAGCTTTGGGGTAGTCCTCATGGAACTGCTCTCAGGT 1836
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1782 CTGAACGAAAAGAGCGATGTTTATAGCTTTGGGGTAATCCTCATGGAACTGCTCTCAGGT 1841
Query 1837 CAAAAGGCATTGTGCTTTGAACGGCCACAGGCTTCAAAACATTTGGTGAGTTACTTTGTT 1896
||||||| ||||||||||||||||||||| | ||||||||| | |||||||||||||||
Sbjct 1842 GAAAAGGCTTTGTGCTTTGAACGGCCACAGACCTCAAAACATCTAGTGAGTTACTTTGTT 1901
Query 1897 TCTGCCACGGAAGAGAATAGGTTGCATGAGATTATTGACGACCAAGTGT-TGAACGAGGA 1955
|| |||| | |||||||||||||||||||||||||||||| ||||| | |||||||| |
Sbjct 1902 TCCGCCATGAAAGAGAATAGGTTGCATGAGATTATTGACGGTCAAGT-TATGAACGAGTA 1960
Query 1956 TAATCTGAAGGAGATCCAG-GAAGCTGCAAGAATTGCTGC-AGAGTGTACAAGGCTAATG 2013
||||| || |||||||| | ||| ||||||||||||| || ||||| ||||| | |
Sbjct 1961 TAATCAGAGGGAGATCC-GAGAATCTGCAAGAATTGC-GCTTGAGTGCACAAGAATTACA 2018
Query 2014 GGAGAGGAAAGGCCAAGGATGAAAGAAGTAGCTGCAAAGCTAGAAGCCTTGAGGGTCGAG 2073
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2019 GGAGAGGAAAGGCCAAGTATGAAAGAAGTAGCTGCAAAGCTAGAAGCCTTGAGAGTC-AA 2077
Query 2074 AA-AACCAAACATAAGTGGTCGGATCAGTATCCTGAGGAGAATGAACACTTGATTGGTGG 2132
|| |||||||||||||||||| ||||| ||||| ||||| ||| || ||| ||||||
Sbjct 2078 AACAACCAAACATAAGTGGTCAGATCAATATCCCAAGGAGGTTGAGCATTTGGTTGGTGT 2137
Query 2133 TCACATCTTGTCTGCACAAGGCGAAACCAGTAGCAGCATTGGCTATGATAGCATCAAAAA 2192
||| ||||| || || ||||| || |||||| |||||||||||||| |||||||| ||
Sbjct 2138 TCAAATCTTATCGGCGCAAGGTGATACCAGT---AGCATTGGCTATGACAGCATCAAGAA 2194
Query 2193 TGTAGCAATATTGGACATTGAAACTGGCCGCTGATATT 2230
||||||||||||||||||||||||||||||||||||||
Sbjct 2195 TGTAGCAATATTGGACATTGAAACTGGCCGCTGATATT 2232
> Ahg472361 jgi|Araly1|472361|fgenesh2_kg.1__2315__AT1G21245.1
Length=500
Score = 604 bits (327), Expect = 7e-172
Identities = 448/506 (89%), Gaps = 9/506 (2%)
Strand=Plus/Plus
Query 1723 ATGGTGCAAGGCACTCTAGGCTATTTAGACCCAGAATACTATACCACAGGGCTTCTGAAC 1782
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGCAAGGCACCCTCGGCTATTTAGACCCAGAATACTATACCACAGGGCTTCTGAAC 60
Query 1783 GAGAAGAGCGATGTGTATAGCTTTGGGGTAGTCCTCATGGAACTGCTCTCAGGTCAAAAG 1842
|| || || ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GAAAAAAGTGATGTTTATAGCTTTGGGGTAGTCCTCATGGAACTGCTATCAGGTCAAAAG 120
Query 1843 GCATTGTGCTTTGAACGGCCACAGGCTTCAAAACATTTGGTGAGTTACTTTGTTTCTGCC 1902
||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 121 GCATTGTGCTTTGAACGGCCAGAGAATTCAAAACATTTGGTGAGTTACTTTGTTTTTGCC 180
Query 1903 ACGGAAGAGAATAGGTTGCATGAGATTATTGACGACCAAGTGTTGAACGAGGATAATCTG 1962
||| ||||||||||||| |||||||||||||| | |||||||||||||||| | |||| |
Sbjct 181 ACGAAAGAGAATAGGTTACATGAGATTATTGATGGCCAAGTGTTGAACGAGAACAATCAG 240
Query 1963 AAGGAGA-TCCAGGAAGCTGCAAGAATTGCTGCAGAGTGTACAAGGCTAATGGGAGAGGA 2021
| || || ||||||||||||||||| ||||| || |||||||| || |||||||| ||
Sbjct 241 AGGG-GAATCCAGGAAGCTGCAAGAGTTGCTATTGAATGTACAAGACTGATGGGAGAAGA 299
Query 2022 AAGGCCAAGGATGAAAGAAGTAGCTGCAAAGCTAGAAGCCTTGAGGGTCGAGAA-AACCA 2080
|||||||||||||||||||||||||| | |||||||| | ||||| ||| | || |||||
Sbjct 300 AAGGCCAAGGATGAAAGAAGTAGCTGTAGAGCTAGAAACTTTGAGCGTCAA-AACAACCA 358
Query 2081 AACATAAGTGGTCGGATCAGTATCCTGAGGAGAATGAACACTTGATTGGTGGTCACATCT 2140
||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||
Sbjct 359 AACATAAGTGGTCGGATCAGTATCCAGAGGAGAATGAACACTTGCTTGGTAGTAACATCG 418
Query 2141 TGTCTGCACAAGGCGAAACCAGTAGCAGCATTGGCTATGATAGCATCAAAAATGTAGCAA 2200
|||||||||||||||| |||| |||| | | || ||||| | |||||| ||| |||||
Sbjct 419 TGTCTGCACAAGGCGATACCATTAGCCG--T-GGTTATGACAACATCAAGAATTTAGCAT 475
Query 2201 TA-TTGGACATTGAAACTGGCCGCTG 2225
| ||| |||||||| ||||||||||
Sbjct 476 TGCTTG-ACATTGAAGCTGGCCGCTG 500
> Ahg911962 jgi|Araly1|911962|Al_scaffold_0001_2216
Length=1722
Score = 368 bits (199), Expect = 1e-100
Identities = 444/555 (80%), Gaps = 46/555 (8%)
Strand=Plus/Plus
Query 1 ATGAAGTTCCAGGAGGGTGTGTTCTTGGTGG-T-TATT-TTCTTCCTTGCATATACTCAG 57
|||||||| |||||||||||||||||||||| | | || |||||||||| |||||| |||
Sbjct 1 ATGAAGTTGCAGGAGGGTGTGTTCTTGGTGGCTATTTTCTTCTTCCTTGGATATACGCAG 60
Query 58 CTTGTGAAGGGGCAACATCAACCTCGCGAAGATTG-TAAACTTAAATGTGGAAACGTCAC 116
|| |||||||||||||||||||||||| ||||||| |||| || |||||| ||| |||
Sbjct 61 CTGGTGAAGGGGCAACATCAACCTCGCCAAGATTGCCAAAC-TAGATGTGGCAACCTCAA 119
Query 117 AATAGAGTACCCTTTTGGTATTTCTACAGGTTGTTACTATCCCGGAGATGATAATTTCAA 176
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 120 AATAGAGTACCCTTTTGGTATTTCTACAGGTTGTTACTATCCGGGAGATGATAGTTTCAA 179
Query 177 TCTCACCTGTGTCGTGGAAGAGAAGCTAC-TACTCTTTGGCA-TCATTCAAGTGACCA-A 233
| ||| ||||| | | |||| || | | | |||| ||| | ||| |||||| | |
Sbjct 180 TATCAACTGTGA-G-G-AAGATAAACCAAATG-TCTTACGCAAT-ATTGAAGTGAG-AGA 233
Query 234 TATTTC-TCACAGTGGCCATG-TAAGTGT-ACTGTTTGAAC-GATTCT-CTGAATGCTAC 288
||| |||||| ||||| | || | || | || || ||| ||| || ||| ||||||
Sbjct 234 C-TTTAATCACAGCGGCCA-GCTACGCGTTA-TGCTT-AACCGAT-CTACTGTTTGCTAC 288
Query 289 GA-GCAGAAA-AA-TGAGACT-AATGGAACTGCCCT-CGGGTATCAGCTGGGTAGTAGTT 343
|| | ||||| || | | | | ||| || ||| | | |||| |||||| || | ||
Sbjct 289 GACGAAGAAAGAAAT-A-A-TGAATTCAA-TGCT-TACCAGTATAAGCTGGATA--A-TT 340
Query 344 TCTCTCTCTCCTCCAACAACAAGTTTACTTTAGTAGGATGTAACGCTTTATCACTTTTGA 403
| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 341 TATCTCTCTCCCCCAACAACAAGTTTACTTTAGTAGGCTGTAACGCTTGGGCACTTCTGA 400
Query 404 GCACTTTTGGAA-AGCAAAACTACTCAACTGGATGCTTGTCATTATGCAATTCTCAACCA 462
| |||||||||| | ||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 401 GTACTTTTGGAATA-CAAAACTACTCAACTGGATGCATGTCATTATGCGATTCTCCCCC- 458
Query 463 GAGGC-AAATGG-AAGATGTAATGGTGTAGGTTGCTGCACAACAGAGGACTTCTCTGTCC 520
| || |||| | || |||||||||||| ||||| || | ||| || | | |||| |||
Sbjct 459 GCCGCCAAATAGCAA-ATGTAATGGTGTTGGTTGTTGTAGAACTGACG--T-CTCTATCC 514
Query 521 CGTTCGATAGCGATA 535
|||| |||||| |||
Sbjct 515 CGTTGGATAGCAATA 529
> Ahg905733 jgi|Araly1|905733|Al_scaffold_0003_2861
Length=810
Score = 364 bits (197), Expect = 1e-99
Identities = 262/292 (90%), Gaps = 10/292 (3%)
Strand=Plus/Plus
Query 1444 GAAGTCCCCTTGTTGGTCTATGAATTCATTACCAATGGCACCCTTTTCGATCACTTGCAC 1503
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 415 GAA-TCCCCTTGTTGGTCTATGAATTCATTACCAGTAGCACCCTTTTCGATCACTTGCAC 473
Query 1504 GGTTCCAT---T-TTTGATTCTTCTCTTACATGGGAACACCGCCTCA-GAATAGCGATAG 1558
|||||||| | |||| ||||||||||||||||||||||||||| | || |||| ||||
Sbjct 474 GGTTCCATGCATGTTTGCTTCTTCTCTTACATGGGAACACCGCCTGAAGA-TAGCAATAG 532
Query 1559 AAGTCGCTGGAACTCTTGCTTATCTTCACTCCTCTGCTTCTATTCCAATCATCCATCGCG 1618
||||||||||| || | || |||||||||||| |||||||||||||||||||||||||||
Sbjct 533 AAGTCGCTGGAGCTATAGCATATCTTCACTCCGCTGCTTCTATTCCAATCATCCATCGCG 592
Query 1619 ATATCAAAACTGCAAATATTCTCTTGGATGAAAACTTAACTGCAAAAGTAGCCGACTTTG 1678
|| ||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 593 ATGTCAAAACTGAAAATATTCTCCTGGATGAAAACTTAACTGCAAAAATAGCTGACTTTG 652
Query 1679 GCGCTTCTAAGCTT-ATACCAATGGATAAAGAGCAGCTCACAACTATG-GTG 1728
||| ||| ||| || || |||||||||||||||||| ||||| ||||| |||
Sbjct 653 GCGGTTCAAAG-TTGATGCCAATGGATAAAGAGCAGTTCACAGCTATGAGTG 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88674090360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5