BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21281.1

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg357572 jgi|Araly1|357572|fgenesh1_pg.C_scaffold_8001359           102    5e-22


> Ahg357572 jgi|Araly1|357572|fgenesh1_pg.C_scaffold_8001359
Length=1368

 Score =  102 bits (55),  Expect = 5e-22
 Identities = 74/83 (89%), Gaps = 1/83 (1%)
 Strand=Plus/Plus

Query  42   ATTACCTTACCCATTAAAGGACCCCGCGCATCATTGGGATATGATCTTGTTGGTCATTAA  101
            ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |  ||
Sbjct  583  ATTACCTTACCCATTAAAGGACCCCGCGCTTCCTTGGGATATGATCCTGTTGGTGAACAA  642

Query  102  T-CAAAGCGTTGAACCTGGTGTC  123
            | ||||| |||||| ||||||||
Sbjct  643  TTCAAAGTGTTGAATCTGGTGTC  665



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4162520449


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5